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Added @typescript-eslint/recommended config with suppressions (#2345)

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* Disabled @blueprintjs/classes-constants. #2288.

* thuang-eslint-bp-off (#2344)

* Disabled @blueprintjs/classes-constants on webpack dev and shared. #2288.

* Added TS recommended, suppress lint errors codemod.

* Added per-error/warning ignore for tests.

* Added per-error/warning ignore for configuration.

* Added per-error/warning ignore for src. Removed suppress package.

* Minor linting.

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
This commit is contained in:
Mim Hastie
2021-07-28 16:06:34 -07:00
committed by GitHub
co-authored by Timmy Huang
parent 32f60a1547
commit 27575b8d86
163 changed files with 1827 additions and 64 deletions
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client/__tests__/e2e/cellxgeneActions.ts
+54
View File
@@ -18,6 +18,7 @@ import {
import { appUrlBase, TEST_EMAIL, TEST_PASSWORD } from "./config";
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function drag(testId: any, start: any, end: any, lasso = false) {
const layout = await waitByID(testId);
// @ts-expect-error ts-migrate(2531) FIXME: Object is possibly 'null'.
@@ -43,6 +44,7 @@ export async function drag(testId: any, start: any, end: any, lasso = false) {
await page.mouse.up();
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function clickOnCoordinate(testId: any, coord: any) {
const layout = await expect(page).toMatchElement(getTestId(testId));
const elBox = await layout.boxModel();
@@ -56,7 +58,9 @@ export async function clickOnCoordinate(testId: any, coord: any) {
await page.mouse.click(x, y);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function getAllHistograms(testclass: any, testIds: any) {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const histTestIds = testIds.map((tid: any) => `histogram-${tid}`);
// these load asynchronously, so we need to wait for each histogram individually,
@@ -77,6 +81,7 @@ export async function getAllHistograms(testclass: any, testIds: any) {
return testIDs.map((id) => id.replace(/^histogram-/, ""));
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function getAllCategoriesAndCounts(category: any) {
// these load asynchronously, so we have to wait for the specific category.
await waitByID(`category-${category}`);
@@ -93,6 +98,7 @@ export async function getAllCategoriesAndCounts(category: any) {
const count = (row.querySelector(
"[data-testclass='categorical-value-count']"
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
) as any).innerText;
return [cat, count];
@@ -101,11 +107,13 @@ export async function getAllCategoriesAndCounts(category: any) {
);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function getCellSetCount(num: any) {
await clickOn(`cellset-button-${num}`);
return getOneElementInnerText(`[data-testid='cellset-count-${num}']`);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function resetCategory(category: any) {
const checkboxId = `${category}:category-select`;
await waitByID(checkboxId);
@@ -125,9 +133,13 @@ export async function resetCategory(category: any) {
if (isExpanded) await clickOn(`${category}:category-expand`);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export async function calcCoordinate(
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
testId: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
xAsPercent: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
yAsPercent: any
) {
const el = await waitByID(testId);
@@ -141,8 +153,11 @@ export async function calcCoordinate(
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export async function calcDragCoordinates(
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
testId: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
coordinateAsPercent: any
) {
return {
@@ -159,6 +174,7 @@ export async function calcDragCoordinates(
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function selectCategory(category: any, values: any, reset = true) {
if (reset) await resetCategory(category);
@@ -170,6 +186,7 @@ export async function selectCategory(category: any, values: any, reset = true) {
}
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function expandCategory(category: any) {
const expand = await waitByID(`${category}:category-expand`);
// @ts-expect-error ts-migrate(2531) FIXME: Object is possibly 'null'.
@@ -179,6 +196,7 @@ export async function expandCategory(category: any) {
if (notExpanded) await clickOn(`${category}:category-expand`);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export async function clip(min = 0, max = 100) {
await clickOn("visualization-settings");
await clearInputAndTypeInto("clip-min-input", min);
@@ -186,6 +204,7 @@ export async function clip(min = 0, max = 100) {
await clickOn("clip-commit");
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function createCategory(categoryName: any) {
await clickOnUntil("open-annotation-dialog", async () => {
await expect(page).toMatchElement(getTestId("new-category-name"));
@@ -201,14 +220,17 @@ export async function createCategory(categoryName: any) {
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function colorByGeneset(genesetName: any) {
await clickOn(`${genesetName}:colorby-entire-geneset`);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function colorByGene(gene: any) {
await clickOn(`colorby-${gene}`);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function assertColorLegendLabel(label: any) {
const handle = await waitByID("continuous_legend_color_by_label");
@@ -220,6 +242,7 @@ export async function assertColorLegendLabel(label: any) {
return expect(result).toBe(label);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function expandGeneset(genesetName: any) {
const expand = await waitByID(`${genesetName}:geneset-expand`);
// @ts-expect-error ts-migrate(2531) FIXME: Object is possibly 'null'.
@@ -229,6 +252,7 @@ export async function expandGeneset(genesetName: any) {
if (notExpanded) await clickOn(`${genesetName}:geneset-expand`);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function createGeneset(genesetName: any) {
await clickOnUntil("open-create-geneset-dialog", async () => {
await expect(page).toMatchElement(getTestId("create-geneset-input"));
@@ -239,6 +263,7 @@ export async function createGeneset(genesetName: any) {
await waitByClass("autosave-complete");
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function editGenesetName(genesetName: any, editText: any) {
const editButton = `${genesetName}:edit-genesetName-mode`;
const submitButton = `${genesetName}:submit-geneset`;
@@ -250,6 +275,7 @@ export async function editGenesetName(genesetName: any, editText: any) {
await clickOn(submitButton);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function deleteGeneset(genesetName: any) {
const targetId = `${genesetName}:delete-geneset`;
@@ -263,6 +289,7 @@ export async function deleteGeneset(genesetName: any) {
await waitByClass("autosave-complete");
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function assertGenesetDoesNotExist(genesetName: any) {
// @ts-expect-error ts-migrate(2554) FIXME: Expected 2 arguments, but got 1.
const result = await isElementPresent(
@@ -271,6 +298,7 @@ export async function assertGenesetDoesNotExist(genesetName: any) {
await expect(result).toBe(false);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function assertGenesetExists(genesetName: any) {
const handle = await waitByID(`${genesetName}:geneset-name`);
@@ -288,6 +316,7 @@ export async function assertGenesetExists(genesetName: any) {
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function addGeneToSet(genesetName: any, geneToAddToSet: any) {
const submitButton = `${genesetName}:submit-gene`;
@@ -296,6 +325,7 @@ export async function addGeneToSet(genesetName: any, geneToAddToSet: any) {
await clickOn(submitButton);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function removeGene(geneSymbol: any) {
const targetId = `delete-from-geneset:${geneSymbol}`;
@@ -304,6 +334,7 @@ export async function removeGene(geneSymbol: any) {
await waitByClass("autosave-complete");
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function assertGeneExistsInGeneset(geneSymbol: any) {
const handle = await waitByID(`${geneSymbol}:gene-label`);
@@ -315,6 +346,7 @@ export async function assertGeneExistsInGeneset(geneSymbol: any) {
return expect(result).toBe(geneSymbol);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function assertGeneDoesNotExist(geneSymbol: any) {
// @ts-expect-error ts-migrate(2554) FIXME: Expected 2 arguments, but got 1.
const result = await isElementPresent(getTestId(`${geneSymbol}:gene-label`));
@@ -322,6 +354,7 @@ export async function assertGeneDoesNotExist(geneSymbol: any) {
await expect(result).toBe(false);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function expandGene(geneSymbol: any) {
await clickOn(`maximize-${geneSymbol}`);
}
@@ -332,6 +365,7 @@ export async function expandGene(geneSymbol: any) {
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function duplicateCategory(categoryName: any) {
await clickOn("open-annotation-dialog");
@@ -358,8 +392,11 @@ export async function duplicateCategory(categoryName: any) {
await waitByClass("autosave-complete");
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export async function renameCategory(
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
oldCategoryName: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
newCategoryName: any
) {
await clickOn(`${oldCategoryName}:see-actions`);
@@ -371,6 +408,7 @@ export async function renameCategory(
await clickOn(`${oldCategoryName}:submit-category-edit`);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function deleteCategory(categoryName: any) {
const targetId = `${categoryName}:delete-category`;
@@ -384,6 +422,7 @@ export async function deleteCategory(categoryName: any) {
await assertCategoryDoesNotExist();
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function createLabel(categoryName: any, labelName: any) {
/**
* (thuang): This explicit wait is needed, since currently showing
@@ -409,15 +448,20 @@ export async function createLabel(categoryName: any, labelName: any) {
await clickOn(`${categoryName}:submit-label`);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function deleteLabel(categoryName: any, labelName: any) {
await expandCategory(categoryName);
await clickOn(`${categoryName}:${labelName}:see-actions`);
await clickOn(`${categoryName}:${labelName}:delete-label`);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export async function renameLabel(
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
categoryName: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
oldLabelName: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
newLabelName: any
) {
await expandCategory(categoryName);
@@ -430,12 +474,14 @@ export async function renameLabel(
await clickOn(`${categoryName}:${oldLabelName}:submit-label-edit`);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function addGeneToSearch(geneName: any) {
await typeInto("gene-search", geneName);
await page.keyboard.press("Enter");
await page.waitForSelector(`[data-testid='histogram-${geneName}']`);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function subset(coordinatesAsPercent: any) {
// In order to deselect the selection after the subset, make sure we have some clear part
// of the scatterplot we can click on
@@ -450,7 +496,9 @@ export async function subset(coordinatesAsPercent: any) {
await clickOnCoordinate("layout-graph", clearCoordinate);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function setSellSet(cellSet: any, cellSetNum: any) {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const selections = cellSet.filter((sel: any) => sel.kind === "categorical");
for (const selection of selections) {
@@ -460,18 +508,21 @@ export async function setSellSet(cellSet: any, cellSetNum: any) {
await getCellSetCount(cellSetNum);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function runDiffExp(cellSet1: any, cellSet2: any) {
await setSellSet(cellSet1, 1);
await setSellSet(cellSet2, 2);
await clickOn("diffexp-button");
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function bulkAddGenes(geneNames: any) {
await clickOn("section-bulk-add");
await typeInto("input-bulk-add", geneNames.join(","));
await page.keyboard.press("Enter");
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function assertCategoryDoesNotExist(categoryName: any) {
// @ts-expect-error ts-migrate(2554) FIXME: Expected 2 arguments, but got 1.
const result = await isElementPresent(
@@ -481,6 +532,7 @@ export async function assertCategoryDoesNotExist(categoryName: any) {
await expect(result).toBe(false);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export async function login() {
await goToPage(appUrlBase);
@@ -502,6 +554,7 @@ export async function login() {
expect(page.url()).toContain(appUrlBase);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export async function logout() {
await clickOnUntil("user-info", async () => {
await waitByID("log-out");
@@ -514,6 +567,7 @@ export async function logout() {
await waitByID("log-in");
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
async function waitUntilFormFieldStable(selector: any) {
const MAX_RETRY = 10;
const WAIT_FOR_MS = 200;
client/__tests__/e2e/e2eAnnotations.test.ts
+8
View File
@@ -76,6 +76,7 @@ const brushThisGeneGeneset = "brush_this_gene";
const geneBrushedCellCount = "109";
const subsetGeneBrushedCellCount = "96";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
async function setup(config: any) {
await goToPage(appUrlBase);
@@ -150,6 +151,7 @@ describe.each([
await expect(page).toClick(getTestClass("pop-1-geneset-expand"));
await page.waitForFunction(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(selector: any) => !document.querySelector(selector),
{},
getTestClass("gene-loading-spinner")
@@ -165,6 +167,7 @@ describe.each([
await expect(page).toClick(getTestClass("pop-2-geneset-expand"));
await page.waitForFunction(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(selector: any) => !document.querySelector(selector),
{},
getTestClass("gene-loading-spinner")
@@ -362,9 +365,11 @@ describe.each([
expect(actualLabelName).toBe(expectedLabelName);
expect(actualLabelCount).toBe(expectedLabelCount);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
async function getInnerText(element: any, className: any) {
return element.$eval(
getTestClass(className),
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(node: any) => node?.innerText
);
}
@@ -531,6 +536,7 @@ describe.each([
expect(result).toMatchSnapshot();
});
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
async function assertCategoryExists(categoryName: any) {
const handle = await waitByID(`${categoryName}:category-label`);
@@ -542,6 +548,7 @@ describe.each([
return expect(result).toBe(categoryName);
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
async function assertLabelExists(categoryName: any, labelName: any) {
await expect(page).toMatchElement(
getTestId(`${categoryName}:category-expand`)
@@ -559,6 +566,7 @@ describe.each([
).toBe(labelName);
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
async function assertLabelDoesNotExist(categoryName: any, labelName: any) {
await expandCategory(categoryName);
const result = await page.$(
client/__tests__/e2e/puppeteer.setup.ts
+1
View File
@@ -50,6 +50,7 @@ beforeEach(async () => {
}
const errorMsgText = await Promise.all(
// TODO can we do this without internal properties?
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
msg.args().map((arg: any) => arg._remoteObject.description)
);
throw new Error(`Console error: ${errorMsgText}`);
client/__tests__/e2e/puppeteerUtils.ts
+17
View File
@@ -1,30 +1,38 @@
/* eslint-disable no-await-in-loop -- await in loop is needed to emulate sequential user actions */
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export function getTestId(id: any) {
return `[data-testid='${id}']`;
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export function getTestClass(className: any) {
return `[data-testclass='${className}']`;
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function waitByID(testId: any, props = {}) {
return page.waitForSelector(getTestId(testId), props);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function waitByClass(testClass: any, props = {}) {
return page.waitForSelector(`[data-testclass='${testClass}']`, props);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function waitForAllByIds(testIds: any) {
await Promise.all(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
testIds.map((testId: any) => page.waitForSelector(getTestId(testId)))
);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function getAllByClass(testClass: any) {
return page.$$(`[data-testclass=${testClass}]`);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function typeInto(testId: any, text: any) {
// blueprint's typeahead is treating typing weird, clicking & waiting first solves this
// only works for text without special characters
@@ -36,6 +44,7 @@ export async function typeInto(testId: any, text: any) {
await page.type(selector, text);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function clearInputAndTypeInto(testId: any, text: any) {
await waitByID(testId);
const selector = getTestId(testId);
@@ -49,6 +58,7 @@ export async function clearInputAndTypeInto(testId: any, text: any) {
await page.type(selector, text);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function clickOn(testId: any, options = {}) {
await expect(page).toClick(getTestId(testId), options);
}
@@ -57,6 +67,7 @@ export async function clickOn(testId: any, options = {}) {
* (thuang): There are times when Puppeteer clicks on a button and the page doesn't respond.
* So I added clickOnUntil() to retry clicking until a given condition is met.
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function clickOnUntil(testId: any, assert: any) {
const MAX_RETRY = 10;
const WAIT_FOR_MS = 200;
@@ -81,18 +92,22 @@ export async function clickOnUntil(testId: any, assert: any) {
}
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function getOneElementInnerHTML(selector: any, options = {}) {
await page.waitForSelector(selector, options);
return page.$eval(selector, (el) => el.innerHTML);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function getOneElementInnerText(selector: any) {
expect(page).toMatchElement(selector);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
return page.$eval(selector, (el) => (el as any).innerText);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function getElementCoordinates(testId: any) {
return page.$eval(getTestId(testId), (elem) => {
const { left, top } = elem.getBoundingClientRect();
@@ -118,6 +133,7 @@ async function nameNewAnnotation() {
}
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function goToPage(url: any) {
await page.goto(url, {
waitUntil: "networkidle0",
@@ -127,6 +143,7 @@ export async function goToPage(url: any) {
await clickTermsOfService();
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
export async function isElementPresent(selector: any, options: any) {
// @ts-expect-error ts-migrate(2554) FIXME: Expected 1 arguments, but got 2.
return Boolean(await page.$(selector, options));
client/__tests__/e2e/screenshot_env.js
+3
View File
@@ -1,8 +1,11 @@
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const PuppeteerEnvironment = require("jest-environment-puppeteer");
require("jest-circus");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const ENV_DEFAULT = require("../../../environment.default.json");
// @ts-expect-error ts-migrate(2451) FIXME: Cannot redeclare block-scoped variable 'takeScreen... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const takeScreenshot = require("./takeScreenshot");
class ScreenshotEnvironment extends PuppeteerEnvironment {
client/__tests__/globalSetup.ts
+4 -1
View File
@@ -1,9 +1,12 @@
// @ts-ignore FIXME revisit from ts-migrate
// eslint-disable-next-line @typescript-eslint/ban-ts-comment --- FIXME: disabled temporarily on migrate to TS.
// @ts-ignore FIXME: 'globalSetup.ts' cannot be compiled under '--isola... Remove this comment to see the full error message
const {
SecretsManagerClient,
GetSecretValueCommand,
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
} = require("@aws-sdk/client-secrets-manager");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const { setup } = require("jest-environment-puppeteer");
const client = new SecretsManagerClient({ region: "us-west-2" });
client/__tests__/reducers/cascade.test.ts
+8
View File
@@ -21,9 +21,13 @@ describe("cascade", () => {
[
"foo",
(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
currentState: any,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
action: any,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
nextSharedState: any,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
prevSharedState: any
) => {
expect(currentState).toBeUndefined();
@@ -36,9 +40,13 @@ describe("cascade", () => {
[
"bar",
(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
currentState: any,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
action: any,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
nextSharedState: any,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
prevSharedState: any
) => {
expect(currentState).toBeUndefined();
client/__tests__/reducers/undoable.test.ts
+3
View File
@@ -24,6 +24,7 @@ describe("create", () => {
describe("undo", () => {
test("expected state modifications", () => {
const initialState = { a: 0, b: 1000 };
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const reducer = (state: any) => {
return { a: state.a + 1, b: state.b + 1 };
};
@@ -44,9 +45,11 @@ describe("undo", () => {
describe("redo", () => {
const initialState = { a: 0, b: 1000 };
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const reducer = (state: any) => {
return { a: state.a + 1, b: state.b + 1 };
};
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let UR: any;
beforeEach(() => {
client/__tests__/util/annoMatrix/annoMatrix.test.ts
+17
View File
@@ -14,9 +14,11 @@ import { Dataframe } from "../../../src/util/dataframe";
enableFetchMocks();
describe("AnnoMatrix", () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let annoMatrix: any;
beforeEach(async () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).resetMocks(); // reset all fetch mocking state
// reset all fetch mocking state
annoMatrix = new AnnoMatrixLoader(
@@ -37,6 +39,7 @@ describe("AnnoMatrix", () => {
});
test("simple single column fetch", async () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).once(serverMocks.annotationsObs(["name_0"]));
const df = await annoMatrix.fetch("obs", "name_0");
@@ -46,6 +49,7 @@ describe("AnnoMatrix", () => {
});
test("simple multi column fetch", async () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any)
.once(serverMocks.annotationsObs(["name_0"]))
.once(serverMocks.annotationsObs(["n_genes"]));
@@ -56,8 +60,10 @@ describe("AnnoMatrix", () => {
});
describe("fetch from field", () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const getLastTwo = async (field: any) => {
const columnNames = annoMatrix.getMatrixColumns(field).slice(-2);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).mockResponses(
...columnNames.map(() => serverMocks.responder)
);
@@ -73,18 +79,21 @@ describe("AnnoMatrix", () => {
test("fetch - test all query forms", async () => {
// single string is a column name
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).once(serverMocks.annotationsObs(["n_genes"]));
await expect(annoMatrix.fetch("obs", "n_genes")).resolves.toBeInstanceOf(
Dataframe
);
// array of column names, expecting n_genes to be cached.
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).once(serverMocks.annotationsObs(["percent_mito"]));
await expect(
annoMatrix.fetch("obs", ["n_genes", "percent_mito"])
).resolves.toBeInstanceOf(Dataframe);
// more complex value filter query, enumerated
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).once(serverMocks.responder);
await expect(
annoMatrix.fetch("X", {
@@ -98,6 +107,7 @@ describe("AnnoMatrix", () => {
// more complex value filter query, range
const varIndex = annoMatrix.schema.annotations.var.index;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any)
.once(
serverMocks.withExpected("/data/var", [[`var:${varIndex}`, "SUMO3"]])
@@ -174,6 +184,7 @@ describe("AnnoMatrix", () => {
expect(am1.nObs).toEqual(am2.nObs);
expect(am1.nVar).toEqual(am2.nVar);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any)
.once(serverMocks.annotationsObs(["n_genes"]))
.once(serverMocks.annotationsObs(["n_genes"]));
@@ -191,6 +202,7 @@ describe("AnnoMatrix", () => {
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'base' implicitly has an 'any' type.
async function addDrop(base) {
expect(base.getMatrixColumns("obs")).not.toContain("foo");
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).mockRejectOnce(new Error("unknown column name"));
await expect(base.fetch("obs", "foo")).rejects.toThrow(
"unknown column name"
@@ -216,6 +228,7 @@ describe("AnnoMatrix", () => {
const am2 = am1.dropObsColumn("foo");
expect(base.getMatrixColumns("obs")).not.toContain("foo");
expect(am2.getMatrixColumns("obs")).not.toContain("foo");
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).mockRejectOnce(new Error("unknown column name"));
await expect(am2.fetch("obs", "foo")).rejects.toThrow(
"unknown column name"
@@ -239,6 +252,7 @@ describe("AnnoMatrix", () => {
const am4 = clip(am3, 0, 1);
await addDrop(am4);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).mockResponse(serverMocks.responder);
await am1.fetch("obs", am1.getMatrixColumns("obs"));
@@ -246,6 +260,7 @@ describe("AnnoMatrix", () => {
await am3.fetch("obs", am3.getMatrixColumns("obs"));
await am4.fetch("obs", am4.getMatrixColumns("obs"));
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).resetMocks();
await addDrop(am1);
@@ -292,6 +307,7 @@ describe("AnnoMatrix", () => {
);
/* drop column */
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).mockRejectOnce(new Error("unknown column name"));
am = am1.dropObsColumn("test");
await expect(am.fetch("obs", "test")).rejects.toThrow(
@@ -313,6 +329,7 @@ describe("AnnoMatrix", () => {
const am3 = isubset(annoMatrix, [10, 1, 0, 30, 2]);
await addSetDrop(am3);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).mockResponse(serverMocks.responder);
await am1.fetch("obs", am1.getMatrixColumns("obs"));
client/__tests__/util/annoMatrix/crossfilter.test.ts
+35 -8
View File
@@ -17,10 +17,13 @@ import { rangeFill } from "../../../src/util/range";
enableFetchMocks();
describe("AnnoMatrixCrossfilter", () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let annoMatrix: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let crossfilter: any;
beforeEach(async () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).resetMocks(); // reset all fetch mocking state
// reset all fetch mocking state
annoMatrix = new AnnoMatrixLoader(
@@ -68,6 +71,7 @@ describe("AnnoMatrixCrossfilter", () => {
crossfilter.obsCrossfilter.hasDimension("obs/louvain")
).toBeFalsy();
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).once(
serverMocks.dataframeResponse(["louvain"], [obsLouvain])
);
@@ -79,6 +83,7 @@ describe("AnnoMatrixCrossfilter", () => {
expect(
newCrossfilter.obsCrossfilter.hasDimension("obs/louvain")
).toBeTruthy();
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
expect((fetch as any).mock.calls).toHaveLength(1);
newCrossfilter = await crossfilter.select("obs", "louvain", {
@@ -90,6 +95,7 @@ describe("AnnoMatrixCrossfilter", () => {
test("simple column select", async () => {
let xfltr;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).once(
serverMocks.dataframeResponse(["louvain"], [obsLouvain])
);
@@ -130,10 +136,12 @@ describe("AnnoMatrixCrossfilter", () => {
const values = df.col("louvain").asArray();
const selected = xfltr.allSelectedMask();
values.every(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(val: any, idx: any) =>
!["NK cells", "B cells"].includes(val) !== !selected[idx]
);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).once(
serverMocks.dataframeResponse(["n_genes"], [new Int32Array(obsNGenes)])
);
@@ -168,6 +176,7 @@ describe("AnnoMatrixCrossfilter", () => {
const varIndex = annoMatrix.schema.annotations.var.index;
const { nObs } = annoMatrix.schema.dataframe;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).once(
serverMocks.dataframeResponse(
["TEST"],
@@ -205,14 +214,17 @@ describe("AnnoMatrixCrossfilter", () => {
const values = df.icol(0).asArray();
const selected = xfltr.allSelectedMask();
values.every(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(val: any, idx: any) => !(val >= 0 && val <= 50) !== !selected[idx]
);
expect(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
selected.reduce((acc: any, val: any) => (val ? acc + 1 : acc), 0)
).toEqual(xfltr.countSelected());
});
test("spatial column select", async () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).once(
serverMocks.dataframeResponse(
["umap_0", "umap_1"],
@@ -241,6 +253,7 @@ describe("AnnoMatrixCrossfilter", () => {
let xfltr = new AnnoMatrixObsCrossfilter(annoMatrixSubset);
expect(xfltr.countSelected()).toEqual(annoMatrixSubset.nObs);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).once(
serverMocks.dataframeResponse(["louvain"], [obsLouvain])
);
@@ -256,6 +269,7 @@ describe("AnnoMatrixCrossfilter", () => {
const values = df.col("louvain").asArray();
const selected = xfltr.allSelectedMask();
values.every(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(val: any, idx: any) =>
!["NK cells", "B cells"].includes(val) !== !selected[idx]
);
@@ -270,6 +284,7 @@ describe("AnnoMatrixCrossfilter", () => {
"unable to obsSelect upon the var dimension"
);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).mockRejectOnce(new Error("unknown column name"));
await expect(crossfilter.select("obs", "foo")).rejects.toThrow(
"unknown column name"
@@ -281,6 +296,7 @@ describe("AnnoMatrixCrossfilter", () => {
/*
test the matrix mutators via crossfilter proxy
*/
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
async function helperAddTestCol(cf: any, colName: any, colSchema = null) {
expect(
cf.annoMatrix.getMatrixColumns("obs").includes(colName)
@@ -301,6 +317,7 @@ describe("AnnoMatrixCrossfilter", () => {
const xfltr = cf.addObsColumn(colSchema, Array, initValue);
expect(
xfltr.annoMatrix.schema.annotations.obs.columns.filter(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(v: any) => v.name === colName
)
).toHaveLength(1);
@@ -331,6 +348,7 @@ describe("AnnoMatrixCrossfilter", () => {
});
expect(
xfltr.annoMatrix.schema.annotations.obs.columns.filter(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(v: any) => v.name === "foo"
)
).toHaveLength(1);
@@ -340,7 +358,7 @@ describe("AnnoMatrixCrossfilter", () => {
expect(
df
.col("foo")
.asArray()
.asArray() // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.every((v: any) => v === "A")
).toBeTruthy();
@@ -378,10 +396,12 @@ describe("AnnoMatrixCrossfilter", () => {
xfltr = xfltr.dropObsColumn("foo");
expect(
xfltr.annoMatrix.schema.annotations.obs.columns.filter(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(v: any) => v.name === "foo"
)
).toHaveLength(0);
expect(xfltr.annoMatrix.schema.annotations.obsByName.foo).toBeUndefined();
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).mockRejectOnce(new Error("unknown column name"));
await expect(xfltr.annoMatrix.fetch("obs", "foo")).rejects.toThrow(
"unknown column name"
@@ -395,6 +415,7 @@ describe("AnnoMatrixCrossfilter", () => {
});
xfltr = xfltr.dropObsColumn("bar");
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).mockRejectOnce(new Error("unknown column name"));
await expect(xfltr.select("obs", "bar", { mode: "all" })).rejects.toThrow(
"unknown column name"
@@ -421,6 +442,7 @@ describe("AnnoMatrixCrossfilter", () => {
type: "categorical",
});
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).mockRejectOnce(new Error("unknown column name"));
await expect(xfltr.annoMatrix.fetch("obs", "foo")).rejects.toThrow(
"unknown column name"
@@ -436,6 +458,7 @@ describe("AnnoMatrixCrossfilter", () => {
});
xfltr = xfltr.renameObsColumn("bar", "xyz");
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).mockRejectOnce(new Error("unknown column name"));
await expect(xfltr.select("obs", "bar", { mode: "all" })).rejects.toThrow(
"unknown column name"
@@ -446,6 +469,7 @@ describe("AnnoMatrixCrossfilter", () => {
});
test("addObsAnnoCategory", async () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let xfltr: any;
// catch unknown or readonly columns
@@ -515,7 +539,7 @@ describe("AnnoMatrixCrossfilter", () => {
expect(
(await xfltr.annoMatrix.fetch("obs", "foo"))
.col("foo")
.asArray()
.asArray() // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.every((v: any) => v === "unassigned")
).toBeTruthy();
expect(xfltr.annoMatrix.getColumnSchema("obs", "foo")).toMatchObject({
@@ -534,7 +558,7 @@ describe("AnnoMatrixCrossfilter", () => {
expect(
(await xfltr1.annoMatrix.fetch("obs", "foo"))
.col("foo")
.asArray()
.asArray() // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.every((v: any) => v === "unassigned")
).toBeTruthy();
expect(xfltr1.annoMatrix.getColumnSchema("obs", "foo")).toMatchObject({
@@ -557,7 +581,7 @@ describe("AnnoMatrixCrossfilter", () => {
expect(
(await xfltr2.annoMatrix.fetch("obs", "foo"))
.col("foo")
.asArray()
.asArray() // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.every((v: any) => v === "red")
).toBeTruthy();
expect(xfltr2.annoMatrix.getColumnSchema("obs", "foo")).toMatchObject({
@@ -593,7 +617,7 @@ describe("AnnoMatrixCrossfilter", () => {
expect(
(await xfltr.annoMatrix.fetch("obs", "foo"))
.col("foo")
.asArray()
.asArray() // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.every((v: any) => v === "unassigned")
).toBeTruthy();
const xfltr1 = await xfltr.setObsColumnValues("foo", [0, 10], "purple");
@@ -602,6 +626,7 @@ describe("AnnoMatrixCrossfilter", () => {
.col("foo")
.asArray()
.every(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(v: any, i: any) =>
v === "unassigned" || (v === "purple" && (i === 0 || i === 10))
)
@@ -660,7 +685,7 @@ describe("AnnoMatrixCrossfilter", () => {
expect(
(await xfltr1.annoMatrix.fetch("obs", "foo"))
.col("foo")
.asArray()
.asArray() // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.filter((v: any) => v === "purple")
).toHaveLength(2);
@@ -668,13 +693,13 @@ describe("AnnoMatrixCrossfilter", () => {
expect(
(await xfltr1.annoMatrix.fetch("obs", "foo"))
.col("foo")
.asArray()
.asArray() // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.filter((v: any) => v === "magenta")
).toHaveLength(2);
expect(
(await xfltr1.annoMatrix.fetch("obs", "foo"))
.col("foo")
.asArray()
.asArray() // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.filter((v: any) => v === "purple")
).toHaveLength(0);
expect(xfltr1.annoMatrix.getColumnSchema("obs", "foo")).toMatchObject({
@@ -695,6 +720,7 @@ describe("AnnoMatrixCrossfilter", () => {
describe("edge cases", () => {
test("transition from empty annoMatrix", async () => {
// select before fetch needs to work
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(fetch as any).once(
serverMocks.dataframeResponse(["louvain"], [obsLouvain])
);
@@ -702,6 +728,7 @@ describe("AnnoMatrixCrossfilter", () => {
mode: "exact",
values: "B cells",
});
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
expect((fetch as any).mock.calls).toHaveLength(1);
expect(xfltr.obsCrossfilter.hasDimension("obs/louvain")).toBeTruthy();
expect(xfltr.obsCrossfilter.all()).toBe(xfltr.annoMatrix._cache.obs);
client/__tests__/util/annoMatrix/serverMocks/index.ts
+1
View File
@@ -1,5 +1,6 @@
export const baseDataURL = "https://a.fake.url/api/v0.2";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(window as any).CELLXGENE = {
API: {
prefix: baseDataURL,
client/__tests__/util/annoMatrix/serverMocks/routes.ts
+23 -2
View File
@@ -14,6 +14,7 @@ const indexedSchema = {
),
};
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function makeMockColumn(s: any, length: any) {
const { type } = s;
switch (type) {
@@ -37,8 +38,10 @@ function makeMockColumn(s: any, length: any) {
}
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function getEncodedDataframe(colNames: any, length: any, colSchemas: any) {
const colIndex = new KeyIndex(colNames);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const columns = colSchemas.map((s: any) => makeMockColumn(s, length));
// @ts-expect-error ts-migrate(2345) FIXME: Argument of type 'KeyIndex' is not assignable to p... Remove this comment to see the full error message
const df = new Dataframe([length, colNames.length], columns, null, colIndex);
@@ -46,6 +49,7 @@ function getEncodedDataframe(colNames: any, length: any, colSchemas: any) {
return body;
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export function dataframeResponse(colNames: any, columns: any) {
const colIndex = new KeyIndex(colNames);
const df = new Dataframe(
@@ -62,8 +66,10 @@ export function dataframeResponse(colNames: any, columns: any) {
return () => Promise.resolve({ body, init: { status: 200, headers } });
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function annotationObsResponse(request: any) {
const url = new URL(request.url);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const params = Array.from((url.searchParams as any).entries());
const names = params
// @ts-expect-error ts-migrate(2769) FIXME: No overload matches this call.
@@ -91,8 +97,10 @@ function annotationObsResponse(request: any) {
});
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function annotationVarResponse(request: any) {
const url = new URL(request.url);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const params = Array.from((url.searchParams as any).entries());
const names = params
// @ts-expect-error ts-migrate(2769) FIXME: No overload matches this call.
@@ -120,8 +128,10 @@ function annotationVarResponse(request: any) {
});
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function layoutObsResponse(request: any) {
const url = new URL(request.url);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const params = Array.from((url.searchParams as any).entries());
// @ts-expect-error ts-migrate(2769) FIXME: No overload matches this call.
const names = params.filter(([k]) => k === "layout-name").map(([, v]) => v);
@@ -150,10 +160,13 @@ function layoutObsResponse(request: any) {
});
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function dataVarResponse(request: any) {
const url = new URL(request.url);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const params = Array.from((url.searchParams as any).entries());
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const colNames = params.map((v) => `${(v as any)[0]}/${(v as any)[1]}`);
const colSchemas = colNames.map(() => schema.schema.dataframe);
const body = getEncodedDataframe(
@@ -171,6 +184,7 @@ function dataVarResponse(request: any) {
});
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export function responder(request: any) {
const url = new URL(request.url);
const { pathname } = url;
@@ -189,29 +203,34 @@ export function responder(request: any) {
return Promise.reject(new Error("bad URL"));
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export function withExpected(expectedURL: any, expectedParams: any) {
/*
Do some additional error checking
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
return (request: any) => {
// if URL is bogus, reject the promise
const url = new URL(request.url);
if (!url.pathname.endsWith(expectedURL)) {
return Promise.reject(new Error("Unexpected URL!"));
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const params = Array.from((url.searchParams as any).entries()).sort(
// @ts-expect-error ts-migrate(2345) FIXME: Argument of type '(a: unknown, b: unknown) => bool... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(a, b) => (a as any)[0] < (b as any)[0]
);
expectedParams = expectedParams
.slice()
.slice() // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.sort((a: any, b: any) => a[0] < b[0]);
if (
params.length !== expectedParams.length ||
!params.every(
(p, i) =>
(p as any)[0] === expectedParams[i][0] &&
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(p as any)[0] === expectedParams[i][0] && // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(p as any)[1] === expectedParams[i][1]
)
) {
@@ -222,9 +241,11 @@ export function withExpected(expectedURL: any, expectedParams: any) {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export function annotationsObs(names: any) {
return withExpected(
"/annotations/obs",
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
names.map((name: any) => ["annotation-name", name])
);
}
client/__tests__/util/annoMatrix/whereCache.test.ts
+3
View File
@@ -219,13 +219,16 @@ describe("whereCache", () => {
})
);
// @ts-expect-error ts-migrate(2531) FIXME: Object is possibly 'null'.
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
expect((wc.where as any).field.queryField.has("queryColumn")).toEqual(true);
expect(
// @ts-expect-error ts-migrate(2531) FIXME: Object is possibly 'null'.
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(wc.where as any).field.queryField.get("queryColumn")
).toBeInstanceOf(Map);
expect(
// @ts-expect-error ts-migrate(2531) FIXME: Object is possibly 'null'.
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(wc.where as any).field.queryField.get("queryColumn").has("queryValue")
).toEqual(true);
expect(_whereCacheGet(wc, schema, "field", query)).toEqual([0, 1, 2]);
client/__tests__/util/centroid.test.ts
+5
View File
@@ -8,8 +8,11 @@ import { indexEntireSchema } from "../../src/util/stateManager/schemaHelpers";
import { _normalizeCategoricalSchema } from "../../src/annoMatrix/schema";
describe("centroid", () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let schema: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let obsAnnotations: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let obsLayout: any;
beforeAll(() => {
@@ -44,6 +47,7 @@ describe("centroid", () => {
quantile([0.5], obsLayout.col("umap_1").asArray())[0],
];
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
centroidResult.forEach((coordinate: any) => {
expect(coordinate).toEqual(expectedResult);
});
@@ -68,6 +72,7 @@ describe("centroid", () => {
quantile([0.5], obsLayout.col("umap_1").asArray())[0],
];
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
centroidResult.forEach((coordinate: any) => {
expect(coordinate).toEqual(expectedResult);
});
client/__tests__/util/dataframe/dataframe.test.ts
+2
View File
@@ -811,6 +811,7 @@ describe("dataframe factories", () => {
new Float64Array(3).fill(1.1),
]
);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const dfB = dfA.mapColumns((col: any, idx: any) => {
expect(dfA.icol(idx).asArray()).toBe(col);
return col;
@@ -869,6 +870,7 @@ describe("dataframe factories", () => {
});
describe("dataframe col", () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let df: any = null;
beforeEach(() => {
df = new Dataframe.Dataframe(
client/__tests__/util/dataframe/summarize.test.ts
+1
View File
@@ -1,5 +1,6 @@
import * as Dataframe from "../../../src/util/dataframe";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function float32Conversion(f: any) {
return new Float32Array([f])[0];
}
client/__tests__/util/promiseLimit.test.ts
+2
View File
@@ -1,6 +1,7 @@
import PromiseLimit from "../../src/util/promiseLimit";
import { range } from "../../src/util/range";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const delay = (t: any) => new Promise((resolve) => setTimeout(resolve, t));
describe("PromiseLimit", () => {
@@ -52,6 +53,7 @@ describe("PromiseLimit", () => {
};
// @ts-expect-error ts-migrate(2554) FIXME: Expected 3 arguments, but got 1.
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
await Promise.all(range(10).map((i: any) => plimit.add(() => callback(i))));
expect(maxRunning).toEqual(2);
client/__tests__/util/stateManager/colorHelpers.test.ts
+8
View File
@@ -125,6 +125,7 @@ describe("categorical color helpers", () => {
Array.from(schema.annotations.obsByName.categoricalColumn.categories)
);
const userDefinedColorTable = {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
categoricalColumn: shuffleCats.reduce((acc: any, label: any) => {
acc[label] = randRGBColor();
return acc;
@@ -159,23 +160,29 @@ TODO:
2. user defined colors
*/
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function indexSchema(schema: any) {
schema.annotations.obsByName = Object.fromEntries(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
schema.annotations?.obs?.columns?.map((v: any) => [v.name, v]) ?? []
);
schema.annotations.varByName = Object.fromEntries(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
schema.annotations?.var?.columns?.map((v: any) => [v.name, v]) ?? []
);
schema.layout.obsByName = Object.fromEntries(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
schema.layout?.obs?.map((v: any) => [v.name, v]) ?? []
);
schema.layout.varByName = Object.fromEntries(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
schema.layout?.var?.map((v: any) => [v.name, v]) ?? []
);
return schema;
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function makeScale(rgb: any) {
// make a scale string from a rgb float triple
return `rgb(${(rgb[0] * 255) >>> 0}, ${(rgb[1] * 255) >>> 0}, ${
@@ -183,6 +190,7 @@ function makeScale(rgb: any) {
})`;
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function shuffle(array: any) {
for (let i = array.length - 1; i > 0; i -= 1) {
const j = (Math.random() * (i + 1)) >>> 0;
client/__tests__/util/stateManager/sampleResponses.ts
+4
View File
@@ -107,8 +107,11 @@ const anAnnotationsVarJSONResponse = {
.value(),
};
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function encodeTypedArray(builder: any, uType: any, uData: any) {
// @ts-expect-error --- FIXME: Element implicitly has an 'any' type.
const uTypeName = NetEncoding.TypedArray[uType];
// @ts-expect-error --- FIXME: Element implicitly has an 'any' type.
const ArrayType = NetEncoding[uTypeName];
const dv = ArrayType.createDataVector(builder, uData);
builder.startObject(1);
@@ -116,6 +119,7 @@ function encodeTypedArray(builder: any, uType: any, uData: any) {
return builder.endObject();
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function encodeMatrix(columns: any, colIndex = undefined) {
/*
IMPORTANT: this is not a general purpose encoder. in particular,
client/__tests__/util/typedCrossfilter/crossfilter.test.ts
+16 -2
View File
@@ -126,6 +126,7 @@ const someData = [
},
];
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let payments: any = null;
beforeEach(() => {
payments = new Crossfilter(someData);
@@ -141,6 +142,7 @@ describe("ImmutableTypedCrossfilter", () => {
.addDimension(
"quantity",
"scalar",
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(i: any, d: any) => d[i].quantity,
Int32Array
)
@@ -163,6 +165,7 @@ describe("ImmutableTypedCrossfilter", () => {
const p2 = payments.addDimension(
"quantity",
"scalar",
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(i: any, data: any) => data[i].quantity,
Int32Array
);
@@ -183,16 +186,18 @@ describe("ImmutableTypedCrossfilter", () => {
.addDimension(
"quantity",
"scalar",
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(i: any, d: any) => d[i].quantity,
Int32Array
)
) // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.addDimension("tip", "scalar", (i: any, d: any) => d[i].tip, Float32Array)
.addDimension(
"total",
"scalar",
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(i: any, d: any) => d[i].total,
Float32Array
)
) // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.addDimension("type", "enum", (i: any, d: any) => d[i].type);
expect(p).toBeDefined();
@@ -245,18 +250,21 @@ describe("ImmutableTypedCrossfilter", () => {
});
describe("scalar dimension", () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let p: any;
beforeEach(() => {
p = payments
.addDimension(
"quantity",
"scalar",
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(i: any, d: any) => d[i].quantity,
Int32Array
)
.addDimension(
"tip",
"scalar",
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(i: any, d: any) => d[i].tip,
Float32Array
)
@@ -302,8 +310,10 @@ describe("ImmutableTypedCrossfilter", () => {
});
describe("enum dimension", () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let p: any;
beforeEach(() => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
p = payments.addDimension("type", "enum", (i: any, d: any) => d[i].type);
});
@@ -342,6 +352,7 @@ describe("ImmutableTypedCrossfilter", () => {
});
describe("spatial dimension", () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let p: any;
beforeEach(() => {
const X = someData.map((r) => r.coords[0]);
@@ -431,18 +442,21 @@ describe("ImmutableTypedCrossfilter", () => {
});
describe("non-finite scalars", () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let p: any;
beforeEach(() => {
p = payments
.addDimension(
"quantity",
"scalar",
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(i: any, d: any) => d[i].quantity,
Int32Array
)
.addDimension(
"nonFinite",
"scalar",
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(i: any, d: any) => d[i].nonFinite,
Float32Array
)
client/__tests__/util/typedCrossfilter/sort.test.ts
+5
View File
@@ -15,6 +15,7 @@ paths for:
const pInf = Number.POSITIVE_INFINITY;
const nInf = Number.NEGATIVE_INFINITY;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function fillRange(arr: any, start = 0) {
const larr = arr;
for (let i = 0, len = larr.length; i < len; i += 1) {
@@ -23,6 +24,7 @@ function fillRange(arr: any, start = 0) {
return larr;
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function fillRand(arr: any) {
for (let i = 0, len = arr.length; i < len; i += 1) {
arr[i] = Math.random();
@@ -140,6 +142,7 @@ describe("sortIndex", () => {
const source1 = Type.from([6, 5, 4, 3, 2, 1, 0]);
const index1 = fillRange(new Uint32Array(source1.length));
expect(sortIndex(index1, source1)).toMatchObject(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
index1.sort((a: any, b: any) => source1[a] - source1[b])
);
@@ -147,12 +150,14 @@ describe("sortIndex", () => {
const source2 = Type.from([6, 5, 4, 3, 2, 1]);
const index2 = fillRange(new Uint32Array(source2.length));
expect(sortIndex(index2, source2)).toMatchObject(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
index2.sort((a: any, b: any) => source1[a] - source1[b])
);
const source3 = fillRand(new Type(1000));
const index3 = fillRange(new Uint32Array(source3.length));
expect(sortIndex(index3, source3)).toMatchObject(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
index3.sort((a: any, b: any) => source1[a] - source1[b])
);
})
client/configuration/babel/babel.prod.js
+1
View File
@@ -10,6 +10,7 @@ module.exports = {
},
],
"@babel/preset-react",
// eslint-disable-next-line prettier/prettier --- FIXME: disabled temporarily on migrate to TS.
"@babel/preset-typescript"
],
plugins: [
client/configuration/eslint/eslint.js
+3
View File
@@ -1,8 +1,10 @@
/* eslint-disable @blueprintjs/classes-constants -- we don't import blueprint here */
module.exports = {
root: true,
parser: "@typescript-eslint/parser",
extends: [
"airbnb-typescript",
"plugin:@typescript-eslint/recommended",
"plugin:eslint-comments/recommended",
"plugin:@blueprintjs/recommended",
"plugin:compat/recommended",
@@ -115,3 +117,4 @@ module.exports = {
},
],
};
/* eslint-enable @blueprintjs/classes-constants -- we don't import blueprint here */
client/configuration/webpack/cspHashPlugin.js
+5
View File
@@ -1,6 +1,10 @@
/* eslint-disable import/no-extraneous-dependencies -- this file is a devDependency*/
/* eslint-disable @blueprintjs/classes-constants -- we don't import blueprint here */
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const cheerio = require("cheerio");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const crypto = require("crypto");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const HtmlWebpackPlugin = require("html-webpack-plugin");
const digest = (str) => {
@@ -50,4 +54,5 @@ class CspHashPlugin {
}
module.exports = CspHashPlugin;
/* eslint-enable @blueprintjs/classes-constants -- we don't import blueprint here */
/* eslint-enable import/no-extraneous-dependencies -- enable*/
client/configuration/webpack/webpack.config.dev.js
+11
View File
@@ -1,13 +1,23 @@
/* eslint-disable @blueprintjs/classes-constants -- we don't import blueprint here */
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const path = require("path");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const webpack = require("webpack");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const HtmlWebpackPlugin = require("html-webpack-plugin");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const FaviconsWebpackPlugin = require("favicons-webpack-plugin");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const ScriptExtHtmlWebpackPlugin = require("script-ext-html-webpack-plugin");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const MiniCssExtractPlugin = require("mini-css-extract-plugin");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const { merge } = require("webpack-merge");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const sharedConfig = require("./webpack.config.shared");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const babelOptions = require("../babel/babel.dev");
const fonts = path.resolve("src/fonts");
@@ -83,3 +93,4 @@ const devConfig = {
};
module.exports = merge(sharedConfig, devConfig);
/* eslint-enable @blueprintjs/classes-constants -- we don't import blueprint here */
client/configuration/webpack/webpack.config.prod.js
+13
View File
@@ -1,18 +1,31 @@
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const path = require("path");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const webpack = require("webpack");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const HtmlWebpackPlugin = require("html-webpack-plugin");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const { CleanWebpackPlugin } = require("clean-webpack-plugin");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const TerserJSPlugin = require("terser-webpack-plugin");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const CleanCss = require("clean-css");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const OptimizeCSSAssetsPlugin = require("optimize-css-assets-webpack-plugin");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const FaviconsWebpackPlugin = require("favicons-webpack-plugin");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const MiniCssExtractPlugin = require("mini-css-extract-plugin");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const { merge } = require("webpack-merge");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const babelOptions = require("../babel/babel.prod");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const CspHashPlugin = require("./cspHashPlugin");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const sharedConfig = require("./webpack.config.shared");
const fonts = path.resolve("src/fonts");
client/configuration/webpack/webpack.config.shared.js
+7 -1
View File
@@ -1,8 +1,13 @@
/* eslint-disable @blueprintjs/classes-constants -- we don't import blueprint here */
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const path = require("path");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const fs = require("fs");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const MiniCssExtractPlugin = require("mini-css-extract-plugin");
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const ObsoleteWebpackPlugin = require("obsolete-webpack-plugin");
// eslint-disable-next-line @blueprintjs/classes-constants -- incorrect match
// eslint-disable-next-line @typescript-eslint/no-var-requires --- FIXME: disabled temporarily on migrate to TS.
const ScriptExtHtmlWebpackPlugin = require("script-ext-html-webpack-plugin");
const src = path.resolve("src");
@@ -75,3 +80,4 @@ module.exports = {
}),
],
};
/* eslint-enable @blueprintjs/classes-constants -- we don't import blueprint here */
client/src/actions/annotation.ts
+41 -5
View File
@@ -9,8 +9,11 @@ import { MatrixFBS, AnnotationsHelpers } from "../util/stateManager";
const { isUserAnnotation } = AnnotationsHelpers;
export const annotationCreateCategoryAction = (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
newCategoryName: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
categoryToDuplicate: any
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
) => async (dispatch: any, getState: any) => {
/*
Add a new user-created category to the obs annotations.
@@ -89,8 +92,11 @@ export const annotationCreateCategoryAction = (
};
export const annotationRenameCategoryAction = (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
oldCategoryName: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
newCategoryName: any
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
) => (dispatch: any, getState: any) => {
/*
Rename a user-created annotation category
@@ -124,8 +130,11 @@ export const annotationRenameCategoryAction = (
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const annotationDeleteCategoryAction = (categoryName: any) => (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
dispatch: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
getState: any
) => {
/*
@@ -149,9 +158,12 @@ export const annotationDeleteCategoryAction = (categoryName: any) => (
};
export const annotationCreateLabelInCategory = (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
categoryName: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
labelName: any,
assignSelected: any
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
assignSelected: any // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
) => async (dispatch: any, getState: any) => {
/*
Add a new label to a user-defined category. If assignSelected is true, assign
@@ -188,8 +200,10 @@ export const annotationCreateLabelInCategory = (
};
export const annotationDeleteLabelFromCategory = (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
categoryName: any,
labelName: any
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
labelName: any // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
) => async (dispatch: any, getState: any) => {
/*
delete a label from a user-defined category
@@ -218,9 +232,13 @@ export const annotationDeleteLabelFromCategory = (
};
export const annotationRenameLabelInCategory = (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
categoryName: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
oldLabelName: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
newLabelName: any
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
) => async (dispatch: any, getState: any) => {
/*
label name change
@@ -255,8 +273,11 @@ export const annotationRenameLabelInCategory = (
};
export const annotationLabelCurrentSelection = (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
categoryName: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
labelName: any
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
) => async (dispatch: any, getState: any) => {
/*
set the label on all currently selected
@@ -284,14 +305,22 @@ export const annotationLabelCurrentSelection = (
});
};
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function writableAnnotations(annoMatrix: any) {
return annoMatrix.schema.annotations.obs.columns
.filter((s: any) => s.writable)
.map((s: any) => s.name);
return (
annoMatrix.schema.annotations.obs.columns
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.filter((s: any) => s.writable)
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.map((s: any) => s.name)
);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export const needToSaveObsAnnotations = (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
annoMatrix: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
lastSavedAnnoMatrix: any
) => {
/*
@@ -317,12 +346,16 @@ export const needToSaveObsAnnotations = (
// no schema changes; check for change in contents
return currentWritable.some(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(col: any) => annoMatrix.col(col) !== lastSavedAnnoMatrix.col(col)
);
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export const saveObsAnnotationsAction = () => async (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
dispatch: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
getState: any
) => {
/*
@@ -394,8 +427,11 @@ export const saveObsAnnotationsAction = () => async (
}
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export const saveGenesetsAction = () => async (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
dispatch: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
getState: any
) => {
const state = getState();
client/src/actions/embedding.ts
+7
View File
@@ -5,9 +5,13 @@ action creators related to embeddings choice
import { AnnoMatrixObsCrossfilter } from "../annoMatrix";
import { _setEmbeddingSubset } from "../util/stateManager/viewStackHelpers";
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export async function _switchEmbedding(
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
prevAnnoMatrix: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
prevCrossfilter: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
newEmbeddingName: any
) {
/*
@@ -25,8 +29,11 @@ export async function _switchEmbedding(
return [annoMatrix, obsCrossfilter];
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const layoutChoiceAction = (newLayoutChoice: any) => async (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
dispatch: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
getState: any
) => {
/*
client/src/actions/geneset.ts
+20
View File
@@ -21,8 +21,11 @@ The behavior manifest in these action creators:
Note that crossfilter indices are lazy created, as needed.
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const genesetDelete = (genesetName: any) => (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
dispatch: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
getState: any
) => {
const state = getState();
@@ -43,8 +46,11 @@ export const genesetDelete = (genesetName: any) => (
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const genesetAddGenes = (genesetName: any, genes: any) => async (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
dispatch: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
getState: any
) => {
const state = getState();
@@ -53,6 +59,7 @@ export const genesetAddGenes = (genesetName: any, genes: any) => async (
const varIndex = schema.annotations.var.index;
const df = await annoMatrix.fetch("var", varIndex);
const geneNames = df.col(varIndex).asArray();
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
genes = genes.reduce((acc: any, gene: any) => {
if (geneNames.indexOf(gene.geneSymbol) === -1) {
postUserErrorToast(
@@ -81,8 +88,11 @@ export const genesetAddGenes = (genesetName: any, genes: any) => async (
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const genesetDeleteGenes = (genesetName: any, geneSymbols: any) => (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
dispatch: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
getState: any
) => {
const state = getState();
@@ -101,8 +111,11 @@ Private
*/
function dropGenesetSummaryDimension(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
obsCrossfilter: any,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
state: any,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
genesetName: any
) {
const { annoMatrix, genesets } = state;
@@ -120,6 +133,7 @@ function dropGenesetSummaryDimension(
return obsCrossfilter.dropDimension("X", query);
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function dropGeneDimension(obsCrossfilter: any, state: any, gene: any) {
const { annoMatrix } = state;
const varIndex = annoMatrix.schema.annotations?.var?.index;
@@ -134,13 +148,18 @@ function dropGeneDimension(obsCrossfilter: any, state: any, gene: any) {
}
function dropGeneset(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
dispatch: any,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
state: any,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
genesetName: any,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
geneSymbols: any
) {
const { obsCrossfilter: prevObsCrossfilter } = state;
const obsCrossfilter = geneSymbols.reduce(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(crossfilter: any, gene: any) =>
dropGeneDimension(crossfilter, state, gene),
dropGenesetSummaryDimension(prevObsCrossfilter, state, genesetName)
@@ -150,6 +169,7 @@ function dropGeneset(
continuousNamespace: { isGeneSetSummary: true },
selection: genesetName,
});
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
geneSymbols.forEach((g: any) =>
dispatch({
type: "continuous metadata histogram cancel",
client/src/actions/index.ts
+18
View File
@@ -15,6 +15,7 @@ import * as genesetActions from "./geneset";
/*
return promise fetching user-configured colors
*/
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
async function userColorsFetchAndLoad(dispatch: any) {
return fetchJson("colors").then((response) =>
dispatch({
@@ -28,6 +29,7 @@ async function schemaFetch() {
return fetchJson("schema");
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
async function configFetch(dispatch: any) {
return fetchJson("config").then((response) => {
const config = { ...globals.configDefaults, ...response.config };
@@ -39,6 +41,7 @@ async function configFetch(dispatch: any) {
});
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
async function userInfoFetch(dispatch: any) {
return fetchJson("userinfo").then((response) => {
const { userinfo: userInfo } = response || {};
@@ -50,6 +53,7 @@ async function userInfoFetch(dispatch: any) {
});
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
async function genesetsFetch(dispatch: any, config: any) {
/* request genesets ONLY if the backend supports the feature */
const defaultResponse = {
@@ -71,19 +75,24 @@ async function genesetsFetch(dispatch: any, config: any) {
}
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function prefetchEmbeddings(annoMatrix: any) {
/*
prefetch requests for all embeddings
*/
const { schema } = annoMatrix;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const available = schema.layout.obs.map((v: any) => v.name);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
available.forEach((embName: any) => annoMatrix.prefetch("emb", embName));
}
/*
Application bootstrap
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
const doInitialDataLoad = () =>
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
catchErrorsWrap(async (dispatch: any) => {
dispatch({ type: "initial data load start" });
@@ -114,6 +123,7 @@ const doInitialDataLoad = () =>
const layoutSchema = schema?.schema?.layout?.obs ?? [];
if (
defaultEmbedding &&
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
layoutSchema.some((s: any) => s.name === defaultEmbedding)
) {
dispatch(embActions.layoutChoiceAction(defaultEmbedding));
@@ -123,6 +133,7 @@ const doInitialDataLoad = () =>
}
}, true);
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
function requestSingleGeneExpressionCountsForColoringPOST(gene: any) {
return {
type: "color by expression",
@@ -130,6 +141,7 @@ function requestSingleGeneExpressionCountsForColoringPOST(gene: any) {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
const requestUserDefinedGene = (gene: any) => ({
type: "request user defined gene success",
@@ -138,6 +150,7 @@ const requestUserDefinedGene = (gene: any) => ({
},
});
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const dispatchDiffExpErrors = (dispatch: any, response: any) => {
switch (response.status) {
case 403:
@@ -162,9 +175,12 @@ const dispatchDiffExpErrors = (dispatch: any, response: any) => {
};
const requestDifferentialExpression = (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
set1: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
set2: any,
num_genes = 50
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
) => async (dispatch: any, getState: any) => {
dispatch({ type: "request differential expression started" });
try {
@@ -214,6 +230,7 @@ const requestDifferentialExpression = (
const diffexpLists = { negative: [], positive: [] };
for (const polarity of Object.keys(diffexpLists)) {
// @ts-expect-error ts-migrate(7053) FIXME: Element implicitly has an 'any' type because expre... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
diffexpLists[polarity] = response[polarity].map((v: any) => [
varIndex.at(v[0], varIndexName),
...v.slice(1),
@@ -233,6 +250,7 @@ const requestDifferentialExpression = (
}
};
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function fetchJson(pathAndQuery: any) {
return doJsonRequest(
`${globals.API.prefix}${globals.API.version}${pathAndQuery}`
client/src/actions/selection.ts
+48 -6
View File
@@ -2,10 +2,13 @@
Action creators for selection
*/
export const selectContinuousMetadataAction = (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
type: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
query: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
range: any,
oldProps = {}
oldProps = {} // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
) => async (dispatch: any, getState: any) => {
const { obsCrossfilter: prevObsCrossfilter } = getState();
@@ -29,12 +32,21 @@ export const selectContinuousMetadataAction = (
};
export const selectCategoricalMetadataAction = (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
type: any, // action type
metadataField: any, // annotation category name
// annotation category name
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
metadataField: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
labels: any,
label: any, // the label being selected/deselected
isSelected: any, // bool
// the label being selected/deselected
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
label: any,
// bool
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
isSelected: any,
oldProps = {}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
) => async (dispatch: any, getState: any) => {
const {
obsCrossfilter: prevObsCrossfilter,
@@ -43,6 +55,7 @@ export const selectCategoricalMetadataAction = (
const labelSelectionState = new Map(categoricalSelection[metadataField]);
labels.forEach(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(l: any) => labelSelectionState.has(l) || labelSelectionState.set(l, true)
);
labelSelectionState.set(label, isSelected);
@@ -70,11 +83,18 @@ export const selectCategoricalMetadataAction = (
};
export const selectCategoricalAllMetadataAction = (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
type: any, // action type
metadataField: any, // annotation category name
// annotation category name
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
metadataField: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
labels: any,
isSelected: any, // bool, select all or none
// bool, select all or none
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
isSelected: any,
oldProps = {}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
) => async (dispatch: any, getState: any) => {
const {
obsCrossfilter: prevObsCrossfilter,
@@ -82,6 +102,7 @@ export const selectCategoricalAllMetadataAction = (
} = getState();
const labelSelectionState = new Map(categoricalSelection[metadataField]);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
labels.forEach((label: any) => labelSelectionState.set(label, isSelected));
const selection = { mode: isSelected ? "all" : "none" };
@@ -104,14 +125,19 @@ export const selectCategoricalAllMetadataAction = (
** Graph selection-related actions
**/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export const graphBrushStartAction = () =>
/* no change to crossfilter until a change fires */
({ type: "graph brush start" });
const _graphBrushWithinRectAction = (
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type: any,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
embName: any,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
brushCoords: any
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
) => async (dispatch: any, getState: any) => {
const { obsCrossfilter: prevObsCrossfilter } = getState();
@@ -129,8 +155,11 @@ const _graphBrushWithinRectAction = (
});
};
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const _graphAllAction = (type: any, embName: any) => async (
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
dispatch: any,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
getState: any
) => {
const { obsCrossfilter: prevObsCrossfilter } = getState();
@@ -145,29 +174,39 @@ const _graphAllAction = (type: any, embName: any) => async (
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const graphBrushChangeAction = (embName: any, brushCoords: any) =>
_graphBrushWithinRectAction("graph brush change", embName, brushCoords);
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const graphBrushEndAction = (embName: any, brushCoords: any) =>
_graphBrushWithinRectAction("graph brush end", embName, brushCoords);
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const graphBrushCancelAction = (embName: any) =>
_graphAllAction("graph brush cancel", embName);
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const graphBrushDeselectAction = (embName: any) =>
_graphAllAction("graph brush deselect", embName);
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export const graphLassoStartAction = () =>
/* no change to crossfilter until a change fires */
({ type: "graph lasso start" });
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const graphLassoCancelAction = (embName: any) =>
_graphAllAction("graph lasso cancel", embName);
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const graphLassoDeselectAction = (embName: any) =>
_graphAllAction("graph lasso cancel", embName);
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const graphLassoEndAction = (embName: any, polygon: any) => async (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
dispatch: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
getState: any
) => {
const { obsCrossfilter: prevObsCrossfilter } = getState();
@@ -192,8 +231,11 @@ export const graphLassoEndAction = (embName: any, polygon: any) => async (
/*
Differential expression set selection
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const setCellSetFromSelection = (cellSetId: any) => (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
dispatch: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
getState: any
) => {
const { obsCrossfilter } = getState();
client/src/actions/viewStack.ts
+5
View File
@@ -18,8 +18,11 @@ import {
_userResetSubsetAnnoMatrix,
} from "../util/stateManager/viewStackHelpers";
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const clipAction = (min: any, max: any) => (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
dispatch: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
getState: any
) => {
/*
@@ -37,6 +40,7 @@ export const clipAction = (min: any, max: any) => (
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const subsetAction = () => (dispatch: any, getState: any) => {
/*
Subset the annoMatrix to the current crossfilter selection by pushing a
@@ -61,6 +65,7 @@ export const subsetAction = () => (dispatch: any, getState: any) => {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const resetSubsetAction = () => (dispatch: any, getState: any) => {
/*
Reset the annoMatrix to all data. Because we may have multiple views
client/src/annoMatrix/annoMatrix.ts
+40 -10
View File
@@ -17,26 +17,37 @@ import { _queryValidate, _queryCacheKey } from "./query";
const _dataframeCache = dataframeMemo(128);
export default class AnnoMatrix {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
public isView: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
public nObs: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
public nVar: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
public rowIndex: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
public schema: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
public userFlags: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
public viewOf: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
protected _cache: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
private _pendingLoad: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
private _whereCache: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
private _gcInfo: any;
/*
@@ -69,6 +80,7 @@ export default class AnnoMatrix {
subset(annoMatrix, rowLabels) -> annoMatrix
etc.
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
static fields() {
/*
return the fields present in the AnnoMatrix instance.
@@ -76,6 +88,7 @@ export default class AnnoMatrix {
return ["obs", "var", "emb", "X"];
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
constructor(schema: any, nObs: any, nVar: any, rowIndex = null) {
/*
Private constructor - this is an abstract base class. Do not use.
@@ -132,6 +145,7 @@ export default class AnnoMatrix {
** Schema helper/accessors
**/
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
getMatrixColumns(field) {
/*
Return array of column names in the field. ONLY supported on the
@@ -144,7 +158,7 @@ export default class AnnoMatrix {
return _schemaColumns(this.schema, field);
}
// eslint-disable-next-line class-methods-use-this -- need to be able to call this on instances
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/explicit-module-boundary-types -- need to be able to call this on instances
getMatrixFields() {
/*
Return array of fields in this annoMatrix. Currently hard-wired to
@@ -156,6 +170,7 @@ export default class AnnoMatrix {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
getColumnSchema(field, col) {
/*
Return the schema for the field & column ,eg,
@@ -169,6 +184,7 @@ export default class AnnoMatrix {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
getColumnDimensions(field, col) {
/*
Return the dimensions on this field / column. For most fields, which are 1D,
@@ -187,10 +203,12 @@ export default class AnnoMatrix {
/**
** General utility methods
**/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
base() {
/*
return the base of view, or `this` if not a view.
*/
// eslint-disable-next-line @typescript-eslint/no-this-alias --- FIXME: disabled temporarily on migrate to TS.
let annoMatrix = this;
while (annoMatrix.isView) annoMatrix = annoMatrix.viewOf;
return annoMatrix;
@@ -200,6 +218,7 @@ export default class AnnoMatrix {
** Load / read interfaces
**/
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
fetch(field, q) {
/*
Return the given query on a single matrix field as a single dataframe.
@@ -258,6 +277,7 @@ export default class AnnoMatrix {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
prefetch(field, q) {
/*
Start a data fetch & cache fill. Identical to fetch() except it does
@@ -289,7 +309,7 @@ export default class AnnoMatrix {
**/
// @ts-expect-error ts-migrate(6133) FIXME: 'col' is declared but its value is never read.
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars -- make sure subclass implements
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars, @typescript-eslint/explicit-module-boundary-types -- make sure subclass implements
addObsAnnoCategory(col, category) {
/*
Add a new category value (aka "label") to a writable obs column, and return the new AnnoMatrix.
@@ -307,7 +327,7 @@ export default class AnnoMatrix {
}
// @ts-expect-error ts-migrate(6133) FIXME: 'col' is declared but its value is never read.
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars -- make sure subclass implements
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars, @typescript-eslint/explicit-module-boundary-types -- make sure subclass implements
async removeObsAnnoCategory(col, category, unassignedCategory) {
/*
Remove a category value from an obs column, reassign any obs having that value
@@ -329,7 +349,7 @@ export default class AnnoMatrix {
}
// @ts-expect-error ts-migrate(6133) FIXME: 'col' is declared but its value is never read.
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars -- make sure subclass implements
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars, @typescript-eslint/explicit-module-boundary-types -- make sure subclass implements
dropObsColumn(col) {
/*
Drop an entire writable column, eg a user-created obs annotation. Typical use
@@ -346,7 +366,7 @@ export default class AnnoMatrix {
}
// @ts-expect-error ts-migrate(6133) FIXME: 'colSchema' is declared but its value is never rea... Remove this comment to see the full error message
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars -- make sure subclass implements
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars, @typescript-eslint/explicit-module-boundary-types -- make sure subclass implements
addObsColumn(colSchema, Ctor, value) {
/*
Add a new writable OBS annotation column, with the caller-specified schema, initial value
@@ -376,7 +396,7 @@ export default class AnnoMatrix {
}
// @ts-expect-error ts-migrate(6133) FIXME: 'oldCol' is declared but its value is never read.
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars -- make sure subclass implements
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars, @typescript-eslint/explicit-module-boundary-types -- make sure subclass implements
renameObsColumn(oldCol, newCol) {
/*
Rename the obs column 'oldCol' to have name 'newCol' and returns new AnnoMatrix.
@@ -392,7 +412,7 @@ export default class AnnoMatrix {
}
// @ts-expect-error ts-migrate(6133) FIXME: 'col' is declared but its value is never read.
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars -- make sure subclass implements
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars, @typescript-eslint/explicit-module-boundary-types -- make sure subclass implements
async setObsColumnValues(col, obsLabels, value) {
/*
Set all obs with label in array 'obsLabels' to have 'value'. Typical use would be
@@ -411,7 +431,7 @@ export default class AnnoMatrix {
}
// @ts-expect-error ts-migrate(6133) FIXME: 'col' is declared but its value is never read.
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars -- make sure subclass implements
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars, @typescript-eslint/explicit-module-boundary-types -- make sure subclass implements
async resetObsColumnValues(col, oldValue, newValue) {
/*
Set by value - all elements in the column with value 'oldValue' are set to 'newValue'.
@@ -429,7 +449,7 @@ export default class AnnoMatrix {
}
// @ts-expect-error ts-migrate(6133) FIXME: 'colSchema' is declared but its value is never rea... Remove this comment to see the full error message
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars -- make sure subclass implements
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars, @typescript-eslint/explicit-module-boundary-types -- make sure subclass implements
addEmbedding(colSchema) {
/*
Add a new obs embedding to the AnnoMatrix, with provided schema.
@@ -443,6 +463,7 @@ export default class AnnoMatrix {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
getCacheKeys(field, query) {
/*
Return cache keys for columns associated with this query. May return
@@ -455,6 +476,7 @@ Return cache keys for columns associated with this query. May return
** Private interfaces below.
**/
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
_resolveCachedQueries(field, queries) {
return (
queries
@@ -471,6 +493,7 @@ Return cache keys for columns associated with this query. May return
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
async _fetch(field, q) {
if (!AnnoMatrix.fields().includes(field)) return undefined;
const queries = Array.isArray(q) ? q : [q];
@@ -518,6 +541,7 @@ Return cache keys for columns associated with this query. May return
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
async _getPendingLoad(field, query, fetchFn) {
/*
Given a query on a field, ensure that we only have a single outstanding
@@ -539,7 +563,7 @@ Return cache keys for columns associated with this query. May return
return this._pendingLoad[field][key];
}
// eslint-disable-next-line class-methods-use-this -- make sure subclass implements
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/explicit-module-boundary-types -- make sure subclass implements
async _doLoad() {
_subclassResponsibility();
}
@@ -574,6 +598,7 @@ Return cache keys for columns associated with this query. May return
as much of the cache is pinned by that data structure.
*/
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
_gcField(field, isHot, pinnedColumns) {
const maxColumns = isHot ? 256 : 10;
const cache = this._cache[field];
@@ -616,6 +641,7 @@ Return cache keys for columns associated with this query. May return
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
_gcFetchCleanup(field, pinnedColumns) {
/*
Called during data load/fetch. By definition, this is 'hot', so we
@@ -631,6 +657,7 @@ Return cache keys for columns associated with this query. May return
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'hints' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
_gc(hints) {
/*
Called from middleware, or elsewhere. isHot is true if we are in the active store,
@@ -644,6 +671,7 @@ Return cache keys for columns associated with this query. May return
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
_gcUpdateStats(field, dataframe) {
/*
called each time a query is performed, allowing the gc to update any bookkeeping
@@ -672,6 +700,7 @@ Return cache keys for columns associated with this query. May return
Do not override _clone();
**/
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'clone' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
_cloneDeeper(clone) {
clone._cache = _shallowClone(this._cache);
clone._gcInfo = new Map();
@@ -684,6 +713,7 @@ Return cache keys for columns associated with this query. May return
return clone;
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
_clone() {
const clone = _shallowClone(this);
this._cloneDeeper(clone);
client/src/annoMatrix/clone.ts
+1
View File
@@ -1,6 +1,7 @@
/*
Shallow clone an object, correctly handling prototype
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export default function _shallowClone(orig: any) {
return Object.assign(Object.create(Object.getPrototypeOf(orig)), orig);
}
client/src/annoMatrix/crossfilter.ts
+52 -1
View File
@@ -24,16 +24,22 @@ function _dimensionName(field, colNames) {
export default class AnnoMatrixObsCrossfilter {
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'annoMatrix' implicitly has an 'any' typ... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
constructor(annoMatrix, _obsCrossfilter = null) {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(this as any).annoMatrix = annoMatrix;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(this as any).obsCrossfilter =
_obsCrossfilter || new Crossfilter(annoMatrix._cache.obs);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(this as any).obsCrossfilter = (this as any).obsCrossfilter.setData(
annoMatrix._cache.obs
);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
size() {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
return (this as any).obsCrossfilter.size();
}
@@ -45,12 +51,15 @@ export default class AnnoMatrixObsCrossfilter {
See API documentation in annoMatrix.js.
**/
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'colSchema' implicitly has an 'any' type... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
addObsColumn(colSchema, Ctor, value) {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const annoMatrix = (this as any).annoMatrix.addObsColumn(
colSchema,
Ctor,
value
);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const obsCrossfilter = (this as any).obsCrossfilter.setData(
annoMatrix._cache.obs
);
@@ -58,7 +67,9 @@ export default class AnnoMatrixObsCrossfilter {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'col' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
dropObsColumn(col) {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const annoMatrix = (this as any).annoMatrix.dropObsColumn(col);
// @ts-expect-error ts-migrate(2339) FIXME: Property 'obsCrossfilter' does not exist on type '... Remove this comment to see the full error message
let { obsCrossfilter } = this;
@@ -70,7 +81,9 @@ export default class AnnoMatrixObsCrossfilter {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'oldCol' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
renameObsColumn(oldCol, newCol) {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const annoMatrix = (this as any).annoMatrix.renameObsColumn(oldCol, newCol);
const oldDimName = _dimensionName("obs", oldCol);
const newDimName = _dimensionName("obs", newCol);
@@ -83,7 +96,9 @@ export default class AnnoMatrixObsCrossfilter {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'col' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
addObsAnnoCategory(col, category) {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const annoMatrix = (this as any).annoMatrix.addObsAnnoCategory(
col,
category
@@ -98,7 +113,9 @@ export default class AnnoMatrixObsCrossfilter {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'col' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
async removeObsAnnoCategory(col, category, unassignedCategory) {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const annoMatrix = await (this as any).annoMatrix.removeObsAnnoCategory(
col,
category,
@@ -114,7 +131,9 @@ export default class AnnoMatrixObsCrossfilter {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'col' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
async setObsColumnValues(col, rowLabels, value) {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const annoMatrix = await (this as any).annoMatrix.setObsColumnValues(
col,
rowLabels,
@@ -130,7 +149,9 @@ export default class AnnoMatrixObsCrossfilter {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'col' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
async resetObsColumnValues(col, oldValue, newValue) {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const annoMatrix = await (this as any).annoMatrix.resetObsColumnValues(
col,
oldValue,
@@ -146,10 +167,13 @@ export default class AnnoMatrixObsCrossfilter {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'colSchema' implicitly has an 'any' type... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
addEmbedding(colSchema) {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const annoMatrix = (this as any).annoMatrix.addEmbedding(colSchema);
return new AnnoMatrixObsCrossfilter(
annoMatrix,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(this as any).obsCrossfilter
);
}
@@ -160,6 +184,7 @@ export default class AnnoMatrixObsCrossfilter {
* annomatrix cache.
*/
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
dropDimension(field, query) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Anno... Remove this comment to see the full error message
const { annoMatrix } = this;
@@ -182,6 +207,7 @@ export default class AnnoMatrixObsCrossfilter {
**/
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
async select(field, query, spec) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Anno... Remove this comment to see the full error message
const { annoMatrix } = this;
@@ -214,62 +240,83 @@ export default class AnnoMatrixObsCrossfilter {
return new AnnoMatrixObsCrossfilter(annoMatrix, obsCrossfilter);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
selectAll() {
/*
Select all on any dimension in this field.
*/
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Anno... Remove this comment to see the full error message
const { annoMatrix } = this;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const currentDims = (this as any).obsCrossfilter.dimensionNames();
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'xfltr' implicitly has an 'any' type.
const obsCrossfilter = currentDims.reduce((xfltr, dim) => {
return xfltr.select(dim, { mode: "all" });
}, (this as any).obsCrossfilter);
}, (this as any).obsCrossfilter); // eslint-disable-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
return new AnnoMatrixObsCrossfilter(annoMatrix, obsCrossfilter);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
countSelected() {
/* if no data yet indexed in the crossfilter, just say everything is selected */
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
if ((this as any).obsCrossfilter.size() === 0)
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
return (this as any).annoMatrix.nObs;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
return (this as any).obsCrossfilter.countSelected();
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
allSelectedMask() {
/* if no data yet indexed in the crossfilter, just say everything is selected */
if (
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(this as any).obsCrossfilter.size() === 0 ||
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(this as any).obsCrossfilter.dimensionNames().length === 0
) {
/* fake the mask */
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
return new Uint8Array((this as any).annoMatrix.nObs).fill(1);
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
return (this as any).obsCrossfilter.allSelectedMask();
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
allSelectedLabels() {
/* if no data yet indexed in the crossfilter, just say everything is selected */
if (
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(this as any).obsCrossfilter.size() === 0 ||
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(this as any).obsCrossfilter.dimensionNames().length === 0
) {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
return (this as any).annoMatrix.rowIndex.labels();
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const mask = (this as any).obsCrossfilter.allSelectedMask();
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const index = (this as any).annoMatrix.rowIndex.isubsetMask(mask);
return index.labels();
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'array' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
fillByIsSelected(array, selectedValue, deselectedValue) {
/* if no data yet indexed in the crossfilter, just say everything is selected */
if (
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(this as any).obsCrossfilter.size() === 0 ||
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(this as any).obsCrossfilter.dimensionNames().length === 0
) {
return array.fill(selectedValue);
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
return (this as any).obsCrossfilter.fillByIsSelected(
array,
selectedValue,
@@ -282,6 +329,7 @@ export default class AnnoMatrixObsCrossfilter {
**/
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'annoMatrix' implicitly has an 'any' typ... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
_addObsCrossfilterDimension(annoMatrix, obsCrossfilter, field, df) {
if (field === "var") return obsCrossfilter;
const dimName = _dimensionNameFromDf(field, df);
@@ -293,9 +341,11 @@ export default class AnnoMatrixObsCrossfilter {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
_getColumnBaseType(field, col) {
/* Look up the primitive type for this field/col */
const colSchema = _getColumnSchema(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(this as any).annoMatrix.schema,
field,
col
@@ -304,6 +354,7 @@ export default class AnnoMatrixObsCrossfilter {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
_getObsDimensionParams(field, df) {
/* return the crossfilter dimensiontype type and params for this field/dataframe */
client/src/annoMatrix/fetchHelpers.ts
+4
View File
@@ -1,18 +1,22 @@
export { doBinaryRequest, doFetch } from "../util/actionHelpers";
/* double URI encode - needed for query-param filters */
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export function _dubEncURIComp(s: any) {
return encodeURIComponent(encodeURIComponent(s));
}
/* currently unused, consider deleting */
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export function _fetchResult(promise: any) {
let _status = "pending";
const res = promise.then(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(r: any) => {
_status = "success";
return r;
},
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(e: any) => {
_status = "error";
throw e;
client/src/annoMatrix/loader.ts
+26 -1
View File
@@ -23,6 +23,7 @@ import {
const promiseThrottle = new PromiseLimit(5);
export default class AnnoMatrixLoader extends AnnoMatrix {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
baseURL: any;
/*
@@ -35,6 +36,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
new AnnoMatrixLoader(serverBaseURL, schema) -> instance
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
constructor(baseURL: any, schema: any) {
const { nObs, nVar } = schema.dataframe;
super(schema, nObs, nVar);
@@ -50,6 +52,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
/**
** Public. API described in base class.
**/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
addObsAnnoCategory(col: any, category: any) {
/*
Add a new category (aka label) to the schema for an obs column.
@@ -62,9 +65,13 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
return newAnnoMatrix;
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
async removeObsAnnoCategory(
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
col: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
category: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
unassignedCategory: any
) {
/*
@@ -86,6 +93,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
return newAnnoMatrix;
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
dropObsColumn(col: any) {
/*
drop column from field
@@ -94,12 +102,14 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
_writableCheck(colSchema); // throws on error
const newAnnoMatrix = this._clone();
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
newAnnoMatrix._cache.obs = (this as any)._cache.obs.dropCol(col);
newAnnoMatrix.schema = removeObsAnnoColumn(this.schema, col);
return newAnnoMatrix;
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'colSchema' implicitly has an 'any' type... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
addObsColumn(colSchema, Ctor, value) {
/*
add a column to field, initializing with value. Value may
@@ -112,6 +122,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
const colName = colSchema.name;
if (
_getColumnSchema(this.schema, "obs", colName) ||
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(this as any)._cache.obs.hasCol(colName)
) {
throw new Error("column already exists");
@@ -128,6 +139,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
} else {
data = new Ctor(this.nObs).fill(value);
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
newAnnoMatrix._cache.obs = (this as any)._cache.obs.withCol(colName, data);
_normalizeCategoricalSchema(
colSchema,
@@ -138,14 +150,17 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'oldCol' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
renameObsColumn(oldCol, newCol) {
/*
Rename the obs oldColName to newColName. oldCol must be writable.
*/
const oldColSchema = _getColumnSchema(this.schema, "obs", oldCol);
_writableCheck(oldColSchema);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const value = (this as any)._cache.obs.hasCol(oldCol)
? (this as any)._cache.obs.col(oldCol).asArray()
? // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(this as any)._cache.obs.col(oldCol).asArray()
: undefined;
return this.dropObsColumn(oldCol).addObsColumn(
{
@@ -158,6 +173,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'col' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
async setObsColumnValues(col, rowLabels, value) {
/*
Set all rows identified by rowLabels to value.
@@ -167,10 +183,12 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
// ensure that we have the data in cache before we manipulate it
await this.fetch("obs", col);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
if (!(this as any)._cache.obs.hasCol(col))
throw new Error("Internal error - user annotation data missing");
const rowIndices = this.rowIndex.getOffsets(rowLabels);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const data = (this as any)._cache.obs.col(col).asArray().slice();
for (let i = 0, len = rowIndices.length; i < len; i += 1) {
const idx = rowIndices[i];
@@ -179,6 +197,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
}
const newAnnoMatrix = this._clone();
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
newAnnoMatrix._cache.obs = (this as any)._cache.obs.replaceColData(
col,
data
@@ -191,6 +210,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'col' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
async resetObsColumnValues(col, oldValue, newValue) {
/*
Set all rows with value 'oldValue' to 'newValue'.
@@ -204,15 +224,18 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
// ensure that we have the data in cache before we manipulate it
await this.fetch("obs", col);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
if (!(this as any)._cache.obs.hasCol(col))
throw new Error("Internal error - user annotation data missing");
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const data = (this as any)._cache.obs.col(col).asArray().slice();
for (let i = 0, l = data.length; i < l; i += 1) {
if (data[i] === oldValue) data[i] = newValue;
}
const newAnnoMatrix = this._clone();
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
newAnnoMatrix._cache.obs = (this as any)._cache.obs.replaceColData(
col,
data
@@ -225,6 +248,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'colSchema' implicitly has an 'any' type... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
addEmbedding(colSchema) {
/*
add new layout to the obs embeddings
@@ -243,6 +267,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
** Private below
**/
// @ts-expect-error ts-migrate(2416) FIXME: Property '_doLoad' in type 'AnnoMatrixLoader' is n... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
async _doLoad(field, query) {
/*
_doLoad - evaluates the query against the field. Returns:
client/src/annoMatrix/middleware.ts
+6
View File
@@ -11,6 +11,7 @@ Undoable metareducer and the AnnoMatrix private API. It would be helpful
to make the Undoable interface better factored.
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
const annoMatrixGC = (store: any) => (next: any) => (action: any) => {
if (_itIsTimeForGC()) {
_doGC(store);
@@ -34,6 +35,7 @@ function _itIsTimeForGC() {
return false;
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function _doGC(store: any) {
const state = store.getState();
@@ -43,7 +45,9 @@ function _doGC(store: any) {
const undoableFuture = state["@@undoable/future"];
const undoableStack = undoablePast
.concat(undoableFuture)
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.flatMap((snapshot: any) =>
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
snapshot.filter((v: any) => v[0] === "annoMatrix").map((v: any) => v[1])
);
const currentAnnoMatrix = state.annoMatrix;
@@ -53,6 +57,7 @@ function _doGC(store: any) {
as our current gc algo is more aggressive with those not hot.
*/
const allAnnoMatrices = new Map(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
undoableStack.map((m: any) => [m, { isHot: false }])
);
let am = currentAnnoMatrix;
@@ -61,6 +66,7 @@ function _doGC(store: any) {
am = am.viewOf;
}
allAnnoMatrices.forEach((hints, annoMatrix) =>
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(annoMatrix as any)._gc(hints)
);
}
client/src/annoMatrix/query.ts
+10 -1
View File
@@ -10,6 +10,7 @@ import { _dubEncURIComp } from "./fetchHelpers";
* @param {object | string} query - the query
* @returns {object | string} - the normalized query
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export function _queryValidate(query: any) {
if (typeof query !== "object") return query;
@@ -40,10 +41,12 @@ export function _queryValidate(query: any) {
throw new Error("query must specify one of where or summarize");
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export function _expectSimpleQuery(query: any) {
if (typeof query === "object") throw new Error("expected simple query");
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export function _expectComplexQuery(query: any) {
if (typeof query !== "object") throw new Error("expected complex query");
}
@@ -55,6 +58,7 @@ export function _expectComplexQuery(query: any) {
* @param {string|object} query
* @returns the key
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export function _queryCacheKey(field: any, query: any) {
if (typeof query === "object") {
// complex query
@@ -84,6 +88,7 @@ export function _queryCacheKey(field: any, query: any) {
return `${field}/${query}`;
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function _urlEncodeWhereQuery(q: any) {
const { field: queryField, column: queryColumn, value: queryValue } = q;
return `${_dubEncURIComp(queryField)}:${_dubEncURIComp(
@@ -91,14 +96,16 @@ function _urlEncodeWhereQuery(q: any) {
)}=${_dubEncURIComp(queryValue)}`;
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function _urlEncodeSummarizeQuery(q: any) {
const { method, field, column, values } = q;
const filter = values
const filter = values // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.map((value: any) => _urlEncodeWhereQuery({ field, column, value }))
.join("&");
return `method=${method}&${filter}`;
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export function _urlEncodeComplexQuery(q: any) {
if (typeof q === "object") {
if (q.where) {
@@ -111,6 +118,7 @@ export function _urlEncodeComplexQuery(q: any) {
throw new Error("Unrecognized complex query type");
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export function _urlEncodeLabelQuery(colKey: any, q: any) {
if (!colKey) throw new Error("Unsupported query by name");
if (typeof q !== "string") throw new Error("Query must be a simple label.");
@@ -120,6 +128,7 @@ export function _urlEncodeLabelQuery(colKey: any, q: any) {
/**
* Generate the column key the server will send us for this query.
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export function _hashStringValues(arrayOfString: any) {
const hash = sha1(arrayOfString.join(""));
return hash;
client/src/annoMatrix/schema.ts
+6
View File
@@ -4,6 +4,7 @@ Private helper functions related to schema
import catLabelSort from "../util/catLabelSort";
import { unassignedCategoryLabel } from "../globals";
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export function _getColumnSchema(schema: any, field: any, col: any) {
/* look up the column definition */
switch (field) {
@@ -26,6 +27,7 @@ export function _getColumnSchema(schema: any, field: any, col: any) {
}
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export function _getColumnDimensionNames(schema: any, field: any, col: any) {
/*
field/col may be an alias for multiple columns. Currently used to map ND
@@ -40,6 +42,7 @@ export function _getColumnDimensionNames(schema: any, field: any, col: any) {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'schema' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export function _schemaColumns(schema, field) {
switch (field) {
case "obs":
@@ -54,6 +57,7 @@ export function _schemaColumns(schema, field) {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'schema' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export function _getWritableColumns(schema, field) {
if (field !== "obs") return [];
return (
@@ -66,12 +70,14 @@ export function _getWritableColumns(schema, field) {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'schema' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export function _isContinuousType(schema) {
const { type } = schema;
return !(type === "string" || type === "boolean" || type === "categorical");
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'colSchema' implicitly has an 'any' type... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export function _normalizeCategoricalSchema(colSchema, col) {
/*
Ensure all enum schema types have a categories array, that
client/src/annoMatrix/viewCreators.ts
+5
View File
@@ -5,6 +5,7 @@ instances of AnnoMatrix, implementing common UI functions.
import { AnnoMatrixRowSubsetView, AnnoMatrixClipView } from "./views";
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export function isubsetMask(annoMatrix: any, obsMask: any) {
/*
Subset annomatrix to contain the rows which have truish value in the mask.
@@ -14,6 +15,7 @@ export function isubsetMask(annoMatrix: any, obsMask: any) {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'annoMatrix' implicitly has an 'any' typ... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export function isubset(annoMatrix, obsOffsets) {
/*
Subset annomatrix to contain the positions contained in the obsOffsets array
@@ -27,6 +29,7 @@ export function isubset(annoMatrix, obsOffsets) {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'annoMatrix' implicitly has an 'any' typ... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export function subset(annoMatrix, obsLabels) {
/*
subset based on labels
@@ -36,6 +39,7 @@ export function subset(annoMatrix, obsLabels) {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'annoMatrix' implicitly has an 'any' typ... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export function subsetByIndex(annoMatrix, obsIndex) {
/*
subset based upon the new obs index.
@@ -44,6 +48,7 @@ export function subsetByIndex(annoMatrix, obsIndex) {
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'annoMatrix' implicitly has an 'any' typ... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export function clip(annoMatrix, qmin, qmax) {
/*
Create a view that clips all continuous data to the [min, max] range.
client/src/annoMatrix/views.ts
+18
View File
@@ -9,6 +9,7 @@ import { _whereCacheCreate } from "./whereCache";
import { _isContinuousType, _getColumnSchema } from "./schema";
class AnnoMatrixView extends AnnoMatrix {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
constructor(viewOf: any, rowIndex = null) {
// @ts-expect-error ts-migrate(2531) FIXME: Object is possibly 'null'.
const nObs = rowIndex ? rowIndex.size() : viewOf.nObs;
@@ -17,6 +18,7 @@ class AnnoMatrixView extends AnnoMatrix {
this.isView = true;
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
addObsAnnoCategory(col: any, category: any) {
const newAnnoMatrix = this._clone();
newAnnoMatrix.viewOf = this.viewOf.addObsAnnoCategory(col, category);
@@ -25,8 +27,11 @@ class AnnoMatrixView extends AnnoMatrix {
}
async removeObsAnnoCategory(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
col: any,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
category: any,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
unassignedCategory: any
) {
const newAnnoMatrix = this._clone();
@@ -39,6 +44,7 @@ class AnnoMatrixView extends AnnoMatrix {
return newAnnoMatrix;
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
dropObsColumn(col: any) {
const newAnnoMatrix = this._clone();
newAnnoMatrix.viewOf = this.viewOf.dropObsColumn(col);
@@ -47,6 +53,7 @@ class AnnoMatrixView extends AnnoMatrix {
return newAnnoMatrix;
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
addObsColumn(colSchema: any, Ctor: any, value: any) {
const newAnnoMatrix = this._clone();
newAnnoMatrix.viewOf = this.viewOf.addObsColumn(colSchema, Ctor, value);
@@ -54,6 +61,7 @@ class AnnoMatrixView extends AnnoMatrix {
return newAnnoMatrix;
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
renameObsColumn(oldCol: any, newCol: any) {
const newAnnoMatrix = this._clone();
newAnnoMatrix.viewOf = this.viewOf.renameObsColumn(oldCol, newCol);
@@ -61,6 +69,7 @@ class AnnoMatrixView extends AnnoMatrix {
return newAnnoMatrix;
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
async setObsColumnValues(col: any, rowLabels: any, value: any) {
const newAnnoMatrix = this._clone();
newAnnoMatrix.viewOf = await this.viewOf.setObsColumnValues(
@@ -73,6 +82,7 @@ class AnnoMatrixView extends AnnoMatrix {
return newAnnoMatrix;
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
async resetObsColumnValues(col: any, oldValue: any, newValue: any) {
const newAnnoMatrix = this._clone();
newAnnoMatrix.viewOf = await this.viewOf.resetObsColumnValues(
@@ -85,6 +95,7 @@ class AnnoMatrixView extends AnnoMatrix {
return newAnnoMatrix;
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
addEmbedding(colSchema: any) {
const newAnnoMatrix = this._clone();
newAnnoMatrix.viewOf = this.viewOf.addEmbedding(colSchema);
@@ -100,6 +111,7 @@ class AnnoMatrixMapView extends AnnoMatrixView {
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'viewOf' implicitly has an 'any' type.
constructor(viewOf, mapFn) {
super(viewOf);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(this as any).mapFn = mapFn;
}
@@ -110,6 +122,7 @@ class AnnoMatrixMapView extends AnnoMatrixView {
const dfMapped = df.mapColumns((colData, colIdx) => {
const colLabel = df.colIndex.getLabel(colIdx);
const colSchema = _getColumnSchema(this.schema, field, colLabel);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
return (this as any).mapFn(field, colLabel, colSchema, colData, df);
});
const whereCacheUpdate = _whereCacheCreate(
@@ -126,12 +139,15 @@ export class AnnoMatrixClipView extends AnnoMatrixMapView {
A view which is a clipped transformation of its parent
*/
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'viewOf' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
constructor(viewOf, qmin, qmax) {
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
super(viewOf, (field, colLabel, colSchema, colData, df) =>
_clipAnnoMatrix(field, colLabel, colSchema, colData, df, qmin, qmax)
);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(this as any).isClipped = true;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(this as any).clipRange = [qmin, qmax];
Object.seal(this);
}
@@ -142,12 +158,14 @@ export class AnnoMatrixRowSubsetView extends AnnoMatrixView {
A view which is a subset of total rows.
*/
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'viewOf' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
constructor(viewOf, rowIndex) {
super(viewOf, rowIndex);
Object.seal(this);
}
// @ts-expect-error ts-migrate(2416) FIXME: Property '_doLoad' in type 'AnnoMatrixRowSubsetVie... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
async _doLoad(field, query) {
const df = await this.viewOf._fetch(field, query);
client/src/annoMatrix/whereCache.ts
+8
View File
@@ -51,10 +51,15 @@ creates a cache entry of:
import { _getColumnDimensionNames } from "./schema";
import { _hashStringValues } from "./query";
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export function _whereCacheGet(
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
whereCache: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
schema: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
field: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
query: any
) {
/*
@@ -91,6 +96,7 @@ export function _whereCacheGet(
}
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export function _whereCacheCreate(field, query, columnLabels) {
/*
Create a new whereCache
@@ -141,6 +147,7 @@ export function _whereCacheCreate(field, query, columnLabels) {
function __mergeQueries(dst, src) {
for (const [queryField, columnMap] of Object.entries(src)) {
dst[queryField] = dst[queryField] || new Map();
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
for (const [queryColumn, valueMap] of columnMap as any) {
if (!dst[queryField].has(queryColumn))
dst[queryField].set(queryColumn, new Map());
@@ -181,6 +188,7 @@ function __whereCacheMerge(dst, src) {
}
// @ts-expect-error ts-migrate(7019) FIXME: Rest parameter 'caches' implicitly has an 'any[]' ... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export function _whereCacheMerge(...caches) {
return caches.reduce(__whereCacheMerge, {});
}
client/src/components/annoDialog.tsx
+4
View File
@@ -1,14 +1,18 @@
import React from "react";
import { Button, Tooltip, Dialog, Classes, Colors } from "@blueprintjs/core";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class AnnoDialog extends React.PureComponent<{}, State> {
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'isActive' does not exist on type 'Readon... Remove this comment to see the full error message
client/src/components/app.tsx
+7
View File
@@ -17,11 +17,15 @@ import actions from "../actions";
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
loading: (state as any).controls.loading,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
error: (state as any).controls.error,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
graphRenderCounter: (state as any).controls.graphRenderCounter,
}))
class App extends React.Component {
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
componentDidMount() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
@@ -33,12 +37,14 @@ class App extends React.Component {
this.forceUpdate();
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
_onURLChanged() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
dispatch({ type: "url changed", url: document.location.href });
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'loading' does not exist on type 'Readonl... Remove this comment to see the full error message
const { loading, error, graphRenderCounter } = this.props;
@@ -72,6 +78,7 @@ class App extends React.Component {
{loading || error ? null : (
<Layout>
<LeftSideBar />
{/* eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS. */}
{(viewportRef: any) => (
<>
<MenuBar />
client/src/components/autosave/filenameDialog.tsx
+15 -1
View File
@@ -11,22 +11,31 @@ import {
Tooltip,
} from "@blueprintjs/core";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
idhash:
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(state as any).config?.parameters?.["annotations-user-data-idhash"] ?? null,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
annotations: (state as any).annotations,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
auth: (state as any).config?.authentication,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
userInfo: (state as any).userInfo,
writableCategoriesEnabled:
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(state as any).config?.parameters?.annotations ?? false,
writableGenesetsEnabled: !(
(state as any).config?.parameters?.annotations_genesets_readonly ?? true
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
((state as any).config?.parameters?.annotations_genesets_readonly ?? true)
),
}))
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class FilenameDialog extends React.Component<{}, State> {
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {
@@ -34,8 +43,10 @@ class FilenameDialog extends React.Component<{}, State> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
dismissFilenameDialog = () => {};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleCreateFilename = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
@@ -46,6 +57,7 @@ class FilenameDialog extends React.Component<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
filenameError = () => {
const legalNames = /^\w+$/;
const { filenameText } = this.state;
@@ -66,6 +78,7 @@ class FilenameDialog extends React.Component<{}, State> {
return err;
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
filenameErrorMessage = () => {
const err = this.filenameError();
let markup = null;
@@ -101,6 +114,7 @@ class FilenameDialog extends React.Component<{}, State> {
return markup;
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'writableCategoriesEnabled' does not exis... Remove this comment to see the full error message
client/src/components/autosave/index.tsx
+24 -4
View File
@@ -3,29 +3,40 @@ import { connect } from "react-redux";
import actions from "../../actions";
import FilenameDialog from "./filenameDialog";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
annotations: (state as any).annotations,
obsAnnotationSaveInProgress:
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(state as any).autosave?.obsAnnotationSaveInProgress ?? false,
genesetSaveInProgress:
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(state as any).autosave?.genesetSaveInProgress ?? false,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
error: (state as any).autosave?.error,
writableCategoriesEnabled:
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(state as any).config?.parameters?.annotations ?? false,
writableGenesetsEnabled: !(
(state as any).config?.parameters?.annotations_genesets_readonly ?? true
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
((state as any).config?.parameters?.annotations_genesets_readonly ?? true)
),
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
annoMatrix: (state as any).annoMatrix,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
genesets: (state as any).genesets,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
lastSavedAnnoMatrix: (state as any).autosave?.lastSavedAnnoMatrix,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
lastSavedGenesets: (state as any).autosave?.lastSavedGenesets,
}))
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class Autosave extends React.Component<{}, State> {
clearInterval: any;
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {
@@ -33,6 +44,7 @@ class Autosave extends React.Component<{}, State> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
componentDidMount() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'writableCategoriesEnabled' does not exis... Remove this comment to see the full error message
const { writableCategoriesEnabled, writableGenesetsEnabled } = this.props;
@@ -46,11 +58,13 @@ class Autosave extends React.Component<{}, State> {
this.setState({ timer });
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
componentWillUnmount() {
const { timer } = this.state;
if (timer) this.clearInterval(timer);
if (timer) clearInterval(timer);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
tick = () => {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
@@ -68,6 +82,7 @@ class Autosave extends React.Component<{}, State> {
}
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
needToSaveObsAnnotations = () => {
/* return true if we need to save obs cell labels, false if we don't */
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Read... Remove this comment to see the full error message
@@ -75,6 +90,7 @@ class Autosave extends React.Component<{}, State> {
return actions.needToSaveObsAnnotations(annoMatrix, lastSavedAnnoMatrix);
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
needToSaveGenesets = () => {
/* return true if we need to save gene ses, false if we do not */
// @ts-expect-error ts-migrate(2339) FIXME: Property 'genesets' does not exist on type 'Readon... Remove this comment to see the full error message
@@ -82,16 +98,19 @@ class Autosave extends React.Component<{}, State> {
return genesets.initialized && genesets.genesets !== lastSavedGenesets;
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
needToSave() {
return this.needToSaveGenesets() || this.needToSaveObsAnnotations();
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
saveInProgress() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'obsAnnotationSaveInProgress' does not ex... Remove this comment to see the full error message
const { obsAnnotationSaveInProgress, genesetSaveInProgress } = this.props;
return obsAnnotationSaveInProgress || genesetSaveInProgress;
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
statusMessage() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'error' does not exist on type 'Readonly<... Remove this comment to see the full error message
const { error } = this.props;
@@ -101,6 +120,7 @@ class Autosave extends React.Component<{}, State> {
return this.needToSave() ? "Unsaved" : "All saved";
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'writableCategoriesEnabled' does not exis... Remove this comment to see the full error message
client/src/components/brushableHistogram/error.tsx
+1
View File
@@ -1,6 +1,7 @@
import React from "react";
import * as globals from "../../globals";
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
const ErrorLoading = ({ displayName, zebra }: any) => {
return (
<div
client/src/components/brushableHistogram/histogram.tsx
+4 -1
View File
@@ -5,6 +5,7 @@ import * as d3 from "d3";
import maybeScientific from "../../util/maybeScientific";
import clamp from "../../util/clamp";
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
const Histogram = ({
field,
fieldForId,
@@ -17,7 +18,7 @@ const Histogram = ({
margin,
isColorBy,
selectionRange,
mini,
mini, // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
}: any) => {
const svgRef = useRef(null);
const [brush, setBrush] = useState(null);
@@ -80,6 +81,7 @@ const Histogram = ({
// @ts-expect-error ts-migrate(2769) FIXME: No overload matches this call.
isColorBy
? // @ts-expect-error ts-migrate(6133) FIXME: 'd' is declared but its value is never read.
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(d: any, i: any) => colorScale(histogramScale(binStart(i)))
: defaultBarColor
);
@@ -134,6 +136,7 @@ const Histogram = ({
.tickFormat(
// @ts-expect-error ts-migrate(2769) FIXME: No overload matches this call.
d3.format(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
y.domain().some((n: any) => Math.abs(n) >= 10000) ? ".0e" : ","
)
)
client/src/components/brushableHistogram/index.tsx
+51 -4
View File
@@ -38,21 +38,28 @@ const HEIGHT_MINI = 15 - MARGIN_MINI.TOP - MARGIN_MINI.BOTTOM;
field
);
return {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
annoMatrix: (state as any).annoMatrix,
isScatterplotXXaccessor:
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(state as any).controls.scatterplotXXaccessor === field,
isScatterplotYYaccessor:
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(state as any).controls.scatterplotYYaccessor === field,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
continuousSelectionRange: (state as any).continuousSelection[myName],
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
isColorAccessor: (state as any).colors.colorAccessor === field,
};
})
class HistogramBrush extends React.PureComponent {
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
static watchAsync(props: any, prevProps: any) {
return !shallowEqual(props.watchProps, prevProps.watchProps);
}
/* memoized closure to prevent HistogramHeader unecessary repaint */
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
handleColorAction = memoize((dispatch) => (field: any, isObs: any) => {
if (isObs) {
dispatch({
@@ -65,6 +72,7 @@ class HistogramBrush extends React.PureComponent {
});
// @ts-expect-error ts-migrate(6133) FIXME: 'selection' is declared but its value is never rea... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
onBrush = (selection: any, x: any, eventType: any) => {
const type = `continuous metadata histogram ${eventType}`;
return () => {
@@ -82,13 +90,17 @@ class HistogramBrush extends React.PureComponent {
} = this.props;
// ignore programmatically generated events
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
if (!(d3 as any).event.sourceEvent) return;
// ignore cascading events, which are programmatically generated
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
if ((d3 as any).event.sourceEvent.sourceEvent) return;
const query = this.createQuery();
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const range = (d3 as any).event.selection
? [x((d3 as any).event.selection[0]), x((d3 as any).event.selection[1])]
? // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
[x((d3 as any).event.selection[0]), x((d3 as any).event.selection[1])]
: null;
const otherProps = {
selection: field,
@@ -105,7 +117,9 @@ class HistogramBrush extends React.PureComponent {
};
// @ts-expect-error ts-migrate(6133) FIXME: 'selection' is declared but its value is never rea... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
onBrushEnd = (selection: any, x: any) => {
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
return () => {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
@@ -123,30 +137,38 @@ class HistogramBrush extends React.PureComponent {
const smallAmountToAvoidInfiniteLoop = 0.1;
// ignore programmatically generated events
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
if (!(d3 as any).event.sourceEvent) return;
// ignore cascading events, which are programmatically generated
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
if ((d3 as any).event.sourceEvent.sourceEvent) return;
let type;
let range = null;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
if ((d3 as any).event.selection) {
type = "continuous metadata histogram end";
if (
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(d3 as any).event.selection[1] - (d3 as any).event.selection[0] >
minAllowedBrushSize
) {
range = [
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
x((d3 as any).event.selection[0]),
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
x((d3 as any).event.selection[1]),
];
} else {
/* the user selected range is too small and will be hidden #587, so take control of it procedurally */
/* https://stackoverflow.com/questions/12354729/d3-js-limit-size-of-brush */
const procedurallyResizedBrushWidth =
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(d3 as any).event.selection[0] +
minAllowedBrushSize +
smallAmountToAvoidInfiniteLoop; //
range = [
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
x((d3 as any).event.selection[0]),
x(procedurallyResizedBrushWidth),
];
@@ -170,6 +192,7 @@ class HistogramBrush extends React.PureComponent {
};
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleSetGeneAsScatterplotX = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, field } = this.props;
@@ -179,6 +202,7 @@ class HistogramBrush extends React.PureComponent {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleSetGeneAsScatterplotY = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, field } = this.props;
@@ -188,6 +212,7 @@ class HistogramBrush extends React.PureComponent {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
removeHistogram = () => {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
@@ -224,6 +249,7 @@ class HistogramBrush extends React.PureComponent {
}
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
fetchAsyncProps = async () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Read... Remove this comment to see the full error message
const { annoMatrix, width } = this.props;
@@ -289,7 +315,7 @@ class HistogramBrush extends React.PureComponent {
};
};
// eslint-disable-next-line class-methods-use-this -- instance method allows for memoization per annotation
// eslint-disable-next-line class-methods-use-this, @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- instance method allows for memoization per annotation
calcHistogramCache(col: any, newMargin: any, newWidth: any, newHeight: any) {
/*
recalculate expensive stuff, notably bins, summaries, etc.
@@ -299,28 +325,38 @@ class HistogramBrush extends React.PureComponent {
const { min: domainMin, max: domainMax } = summary;
const numBins = 40;
const { TOP: topMargin, LEFT: leftMargin } = newMargin;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(histogramCache as any).domain = [domainMin, domainMax];
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
/* doesn't change with mini */ (histogramCache as any).x = d3
.scaleLinear()
.domain([domainMin, domainMax])
.range([leftMargin, leftMargin + newWidth]);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(histogramCache as any).bins = col.histogram(numBins, [
domainMin,
domainMax,
]);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
/* memoized */ (histogramCache as any).binWidth =
(domainMax - domainMin) / numBins;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(histogramCache as any).binStart = (i: any) =>
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
domainMin + i * (histogramCache as any).binWidth;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(histogramCache as any).binEnd = (i: any) =>
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
domainMin + (i + 1) * (histogramCache as any).binWidth;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const yMax = (histogramCache as any).bins.reduce((l: any, r: any) =>
l > r ? l : r
);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(histogramCache as any).y = d3
.scaleLinear()
.domain([0, yMax])
@@ -329,6 +365,7 @@ class HistogramBrush extends React.PureComponent {
return histogramCache;
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
createQuery() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'isObs' does not exist on type 'Readonly<... Remove this comment to see the full error message
const { isObs, isGeneSetSummary, field, setGenes, annoMatrix } = this.props;
@@ -366,6 +403,7 @@ class HistogramBrush extends React.PureComponent {
];
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
@@ -425,6 +463,7 @@ class HistogramBrush extends React.PureComponent {
</Async.Rejected>
<Async.Fulfilled>
{(asyncProps) =>
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(asyncProps as any).OK2Render ? (
<div
id={`histogram_${fieldForId}`}
@@ -456,11 +495,14 @@ class HistogramBrush extends React.PureComponent {
<Histogram
field={field}
fieldForId={fieldForId}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
display={(asyncProps as any).isSingleValue ? "none" : "block"}
histogram={
mini
? (asyncProps as any).miniHistogram
: (asyncProps as any).histogram
? // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(asyncProps as any).miniHistogram
: // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(asyncProps as any).histogram
}
width={width}
height={mini ? HEIGHT_MINI : HEIGHT}
@@ -477,10 +519,15 @@ class HistogramBrush extends React.PureComponent {
isGeneSetSummary={isGeneSetSummary}
isObs={isObs}
displayName={field}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
hideRanges={(asyncProps as any).isSingleValue}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
rangeMin={(asyncProps as any).unclippedRange[0]}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
rangeMax={(asyncProps as any).unclippedRange[1]}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
rangeColorMin={(asyncProps as any).unclippedRangeColor[0]}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
rangeColorMax={(asyncProps as any).unclippedRangeColor[1]}
/>
)}
client/src/components/brushableHistogram/loading.tsx
+1
View File
@@ -3,6 +3,7 @@ import { Button } from "@blueprintjs/core";
import * as globals from "../../globals";
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
const StillLoading = ({ zebra, displayName }: any) => {
/*
Render a loading indicator for the field.
client/src/components/categorical/annoSelect.tsx
+4
View File
@@ -2,14 +2,18 @@ import React from "react";
import { Button, MenuItem } from "@blueprintjs/core";
import { Select } from "@blueprintjs/select";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class DuplicateCategorySelect extends React.PureComponent<{}, State> {
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'allCategoryNames' does not exist on type... Remove this comment to see the full error message
client/src/components/categorical/category/annoDialogAddLabel.tsx
+13
View File
@@ -5,15 +5,21 @@ import LabelInput from "../../labelInput";
import { labelPrompt, isLabelErroneous } from "../labelUtil";
import actions from "../../../actions";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
annotations: (state as any).annotations,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
schema: (state as any).annoMatrix?.schema,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
obsCrossfilter: (state as any).obsCrossfilter,
}))
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class Category extends React.PureComponent<{}, State> {
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {
@@ -21,6 +27,7 @@ class Category extends React.PureComponent<{}, State> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
disableAddNewLabelMode = (e: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
@@ -33,6 +40,7 @@ class Category extends React.PureComponent<{}, State> {
if (e) e.preventDefault();
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleAddNewLabelToCategory = (e: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, metadataField } = this.props;
@@ -49,6 +57,7 @@ class Category extends React.PureComponent<{}, State> {
e.preventDefault();
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
addLabelAndAssignCells = (e: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, metadataField } = this.props;
@@ -61,20 +70,24 @@ class Category extends React.PureComponent<{}, State> {
e.preventDefault();
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
labelNameError = (name: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'metadataField' does not exist on type 'R... Remove this comment to see the full error message
const { metadataField, schema } = this.props;
return isLabelErroneous(name, metadataField, schema);
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
instruction = (label: any) => {
return labelPrompt(this.labelNameError(label), "New, unique label", ":");
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleChangeOrSelect = (label: any) => {
this.setState({ newLabelText: label });
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const { newLabelText } = this.state;
// @ts-expect-error ts-migrate(2339) FIXME: Property 'metadataField' does not exist on type 'R... Remove this comment to see the full error message
client/src/components/categorical/category/annoDialogEditCategoryName.tsx
+15
View File
@@ -7,14 +7,19 @@ import { labelPrompt } from "../labelUtil";
import { AnnotationsHelpers } from "../../../util/stateManager";
import actions from "../../../actions";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
annotations: (state as any).annotations,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
schema: (state as any).annoMatrix?.schema,
}))
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class AnnoDialogEditCategoryName extends React.PureComponent<{}, State> {
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {
@@ -23,12 +28,14 @@ class AnnoDialogEditCategoryName extends React.PureComponent<{}, State> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleChangeOrSelect = (name: any) => {
this.setState({
newCategoryText: name,
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
disableEditCategoryMode = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, metadataField } = this.props;
@@ -38,6 +45,7 @@ class AnnoDialogEditCategoryName extends React.PureComponent<{}, State> {
this.setState({ newCategoryText: metadataField });
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleEditCategory = (e: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, metadataField } = this.props;
@@ -49,6 +57,7 @@ class AnnoDialogEditCategoryName extends React.PureComponent<{}, State> {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'schema' does not exist on type 'Readonly... Remove this comment to see the full error message
const { schema } = this.props;
const allCategoryNames = schema.annotations.obs.columns.map(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(c: any) => c.name
);
if (
@@ -66,6 +75,7 @@ class AnnoDialogEditCategoryName extends React.PureComponent<{}, State> {
e.preventDefault();
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
editedCategoryNameError = (name: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'metadataField' does not exist on type 'R... Remove this comment to see the full error message
const { metadataField } = this.props;
@@ -82,6 +92,7 @@ class AnnoDialogEditCategoryName extends React.PureComponent<{}, State> {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'schema' does not exist on type 'Readonly... Remove this comment to see the full error message
const { schema } = this.props;
const allCategoryNames = schema.annotations.obs.columns.map(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(c: any) => c.name
);
const categoryNameAlreadyExists = allCategoryNames.indexOf(name) > -1;
@@ -93,6 +104,7 @@ class AnnoDialogEditCategoryName extends React.PureComponent<{}, State> {
return false;
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
instruction = (name: any) => {
return labelPrompt(
this.editedCategoryNameError(name),
@@ -101,12 +113,15 @@ class AnnoDialogEditCategoryName extends React.PureComponent<{}, State> {
);
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
allCategoryNames() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'schema' does not exist on type 'Readonly... Remove this comment to see the full error message
const { schema } = this.props;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
return schema.annotations.obs.columns.map((c: any) => c.name);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const { newCategoryText } = this.state;
// @ts-expect-error ts-migrate(2339) FIXME: Property 'metadataField' does not exist on type 'R... Remove this comment to see the full error message
client/src/components/categorical/category/annoMenuCategory.tsx
+8
View File
@@ -16,18 +16,23 @@ import { IconNames } from "@blueprintjs/icons";
import * as globals from "../../../globals";
import actions from "../../../actions";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
annotations: (state as any).annotations,
}))
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class AnnoMenuCategory extends React.PureComponent<{}, State> {
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
activateAddNewLabelMode = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, metadataField } = this.props;
@@ -37,6 +42,7 @@ class AnnoMenuCategory extends React.PureComponent<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
activateEditCategoryMode = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, metadataField } = this.props;
@@ -46,12 +52,14 @@ class AnnoMenuCategory extends React.PureComponent<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleDeleteCategory = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, metadataField } = this.props;
dispatch(actions.annotationDeleteCategoryAction(metadataField));
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'metadataField' does not exist on type 'R... Remove this comment to see the full error message
client/src/components/categorical/category/index.tsx
+26
View File
@@ -33,35 +33,47 @@ const LABEL_WIDTH_ANNO = LABEL_WIDTH - ANNO_BUTTON_WIDTH;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state, ownProps) => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const schema = (state as any).annoMatrix?.schema;
// @ts-expect-error ts-migrate(2339) FIXME: Property 'metadataField' does not exist on type '{... Remove this comment to see the full error message
const { metadataField } = ownProps;
const isUserAnno = schema?.annotations?.obsByName[metadataField]?.writable;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const categoricalSelection = (state as any).categoricalSelection?.[
metadataField
];
return {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
colors: (state as any).colors,
categoricalSelection,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
annotations: (state as any).annotations,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
annoMatrix: (state as any).annoMatrix,
schema,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
crossfilter: (state as any).obsCrossfilter,
isUserAnno,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
genesets: (state as any).genesets.genesets,
};
})
class Category extends React.PureComponent {
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
static getSelectionState(
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
categoricalSelection: any,
// @ts-expect-error ts-migrate(6133) FIXME: 'metadataField' is declared but its value is never... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
metadataField: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
categorySummary: any
) {
// total number of categories in this dimension
const totalCatCount = categorySummary.numCategoryValues;
// number of selected options in this category
const selectedCatCount = categorySummary.categoryValues.reduce(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(res: any, label: any) =>
categoricalSelection.get(label) ?? true ? res + 1 : res,
0
@@ -73,12 +85,14 @@ class Category extends React.PureComponent {
: "some";
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
static watchAsync(props: any, prevProps: any) {
return !shallowEqual(props.watchProps, prevProps.watchProps);
}
createCategorySummaryFromDfCol = memoize(createCategorySummaryFromDfCol);
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
getSelectionState(categorySummary: any) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'categoricalSelection' does not exist on ... Remove this comment to see the full error message
const { categoricalSelection, metadataField } = this.props;
@@ -89,6 +103,7 @@ class Category extends React.PureComponent {
);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleColorChange = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, metadataField } = this.props;
@@ -98,6 +113,7 @@ class Category extends React.PureComponent {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleCategoryClick = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annotations' does not exist on type 'Rea... Remove this comment to see the full error message
const { annotations, metadataField, onExpansionChange } = this.props;
@@ -109,12 +125,14 @@ class Category extends React.PureComponent {
}
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleCategoryKeyPress = (e: any) => {
if (e.key === "Enter") {
this.handleCategoryClick();
}
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleToggleAllClick = (categorySummary: any) => {
const isChecked = this.getSelectionState(categorySummary);
if (isChecked === "all") {
@@ -124,6 +142,7 @@ class Category extends React.PureComponent {
}
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
fetchAsyncProps = async (props: any) => {
const { annoMatrix, metadataField, colors } = props.watchProps;
// @ts-expect-error ts-migrate(2339) FIXME: Property 'crossfilter' does not exist on type 'Rea... Remove this comment to see the full error message
@@ -146,6 +165,7 @@ class Category extends React.PureComponent {
};
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
async fetchData(annoMatrix: any, metadataField: any, colors: any) {
/*
fetch our data and the color-by data if appropriate, and then build a summary
@@ -180,6 +200,7 @@ class Category extends React.PureComponent {
return [categoryData, categorySummary, colorData];
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
updateColorTable(colorData: any) {
// color table, which may be null
// @ts-expect-error ts-migrate(2339) FIXME: Property 'schema' does not exist on type 'Readonly... Remove this comment to see the full error message
@@ -199,6 +220,7 @@ class Category extends React.PureComponent {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
toggleNone(categorySummary: any) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, metadataField } = this.props;
@@ -212,6 +234,7 @@ class Category extends React.PureComponent {
);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
toggleAll(categorySummary: any) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, metadataField } = this.props;
@@ -225,6 +248,7 @@ class Category extends React.PureComponent {
);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'metadataField' does not exist on type 'R... Remove this comment to see the full error message
@@ -319,6 +343,7 @@ class Category extends React.PureComponent {
export default Category;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const StillLoading = ({ metadataField, checkboxID }: any) => {
/*
We are still loading this category, so render a "busy" signal.
@@ -370,6 +395,7 @@ const StillLoading = ({ metadataField, checkboxID }: any) => {
);
};
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const ErrorLoading = ({ metadataField, error }: any) => {
console.error(error); // log error to console as it is unexpected.
return (
client/src/components/categorical/index.tsx
+19 -2
View File
@@ -10,16 +10,22 @@ import LabelInput from "../labelInput";
import { labelPrompt } from "./labelUtil";
import actions from "../../actions";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
writableCategoriesEnabled:
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(state as any).config?.parameters?.annotations ?? false,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
schema: (state as any).annoMatrix?.schema,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
userInfo: (state as any).userInfo,
}))
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class Categories extends React.Component<{}, State> {
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {
@@ -30,6 +36,7 @@ class Categories extends React.Component<{}, State> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleCreateUserAnno = (e: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
@@ -48,10 +55,12 @@ class Categories extends React.Component<{}, State> {
e.preventDefault();
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleEnableAnnoMode = () => {
this.setState({ createAnnoModeActive: true });
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleDisableAnnoMode = () => {
this.setState({
createAnnoModeActive: false,
@@ -60,10 +69,12 @@ class Categories extends React.Component<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleModalDuplicateCategorySelection = (d: any) => {
this.setState({ categoryToDuplicate: d });
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
categoryNameError = (name: any) => {
/*
return false if this is a LEGAL/acceptable category name or NULL/empty string,
@@ -78,6 +89,7 @@ class Categories extends React.Component<{}, State> {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'schema' does not exist on type 'Readonly... Remove this comment to see the full error message
const { schema } = this.props;
const allCategoryNames = schema.annotations.obs.columns.map(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(c: any) => c.name
);
/* check category name syntax */
@@ -93,14 +105,17 @@ class Categories extends React.Component<{}, State> {
return false;
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleChange = (name: any) => {
this.setState({ newCategoryText: name });
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleSelect = (name: any) => {
this.setState({ newCategoryText: name });
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
instruction = (name: any) => {
return labelPrompt(
this.categoryNameError(name),
@@ -109,6 +124,7 @@ class Categories extends React.Component<{}, State> {
);
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
onExpansionChange = (catName: any) => {
const { expandedCats } = this.state;
if (expandedCats.has(catName)) {
@@ -122,6 +138,7 @@ class Categories extends React.Component<{}, State> {
}
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const {
createAnnoModeActive,
@@ -180,7 +197,6 @@ class Categories extends React.Component<{}, State> {
/>
}
/>
{writableCategoriesEnabled ? (
<div style={{ marginBottom: 10 }}>
<Tooltip
@@ -209,9 +225,9 @@ class Categories extends React.Component<{}, State> {
</Tooltip>
</div>
) : null}
{/* READ ONLY CATEGORICAL FIELDS */}
{/* this is duplicative but flat, could be abstracted */}
{/* eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS */}
{allCategoryNames.map((catName: any) =>
!schema.annotations.obsByName[catName].writable &&
(schema.annotations.obsByName[catName].categories?.length > 1 ||
@@ -227,6 +243,7 @@ class Categories extends React.Component<{}, State> {
) : null
)}
{/* WRITEABLE FIELDS */}
{/* eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS */}
{allCategoryNames.map((catName: any) =>
schema.annotations.obsByName[catName].writable ? (
<Category
client/src/components/categorical/labelUtil.tsx
+2
View File
@@ -3,6 +3,7 @@ import { Colors } from "@blueprintjs/core";
import { AnnotationsHelpers } from "../../util/stateManager";
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export function isLabelErroneous(label: any, metadataField: any, schema: any) {
/*
return false if this is a LEGAL/acceptable category name or NULL/empty string,
@@ -35,6 +36,7 @@ const errorMessageMap = {
"multi-space-run": "Multiple consecutive spaces not allowed",
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export function labelPrompt(err: any, prolog: any, epilog: any) {
let errPrompt = null;
if (err) {
client/src/components/categorical/value/index.tsx
+52 -1
View File
@@ -30,6 +30,7 @@ const STACKED_BAR_HEIGHT = 11;
const STACKED_BAR_WIDTH = 100;
/* this is defined outside of the class so we can use it in connect() */
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function _currentLabelAsString(ownProps: any) {
const { label } = ownProps;
// when called as a function, the String() constructor performs type conversion,
@@ -37,6 +38,7 @@ function _currentLabelAsString(ownProps: any) {
return String(label);
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@@ -54,14 +56,18 @@ type State = any;
const isSelected = category.get(label) ?? true;
return {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
annotations: (state as any).annotations,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
schema: (state as any).annoMatrix?.schema,
isDilated,
isSelected,
label,
};
})
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class CategoryValue extends React.Component<{}, State> {
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {
@@ -69,12 +75,15 @@ class CategoryValue extends React.Component<{}, State> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
componentDidUpdate(prevProps: {}) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'metadataField' does not exist on type 'R... Remove this comment to see the full error message
const { metadataField, categoryIndex, categorySummary } = this.props;
if (
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(prevProps as any).metadataField !== metadataField ||
(prevProps as any).categoryIndex !== categoryIndex ||
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(prevProps as any).categoryIndex !== categoryIndex || // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(prevProps as any).categorySummary !== categorySummary
) {
// eslint-disable-next-line react/no-did-update-set-state --- adequately checked to prevent looping
@@ -85,6 +94,7 @@ class CategoryValue extends React.Component<{}, State> {
}
// If coloring by and this isn't the colorAccessor and it isn't being edited
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
get shouldRenderStackedBarOrHistogram() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'colorAccessor' does not exist on type 'R... Remove this comment to see the full error message
const { colorAccessor, isColorBy, annotations } = this.props;
@@ -92,18 +102,21 @@ class CategoryValue extends React.Component<{}, State> {
return !!colorAccessor && !isColorBy && !annotations.isEditingLabelName;
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleDeleteValue = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, metadataField, label } = this.props;
dispatch(actions.annotationDeleteLabelFromCategory(metadataField, label));
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleAddCurrentSelectionToThisLabel = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, metadataField, label } = this.props;
dispatch(actions.annotationLabelCurrentSelection(metadataField, label));
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleEditValue = (e: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, metadataField, label } = this.props;
@@ -119,6 +132,7 @@ class CategoryValue extends React.Component<{}, State> {
e.preventDefault();
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleCreateArbitraryLabel = (txt: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, metadataField, label } = this.props;
@@ -128,6 +142,7 @@ class CategoryValue extends React.Component<{}, State> {
);
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
labelNameError = (name: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'metadataField' does not exist on type 'R... Remove this comment to see the full error message
const { metadataField, schema } = this.props;
@@ -135,10 +150,12 @@ class CategoryValue extends React.Component<{}, State> {
return isLabelErroneous(name, metadataField, schema);
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
instruction = (label: any) => {
return labelPrompt(this.labelNameError(label), "New, unique label", ":");
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
activateEditLabelMode = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, metadataField, categoryIndex, label } = this.props;
@@ -150,6 +167,7 @@ class CategoryValue extends React.Component<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
cancelEditMode = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, metadataField, categoryIndex, label } = this.props;
@@ -164,6 +182,7 @@ class CategoryValue extends React.Component<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
toggleOff = () => {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
@@ -187,6 +206,7 @@ class CategoryValue extends React.Component<{}, State> {
);
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
shouldComponentUpdate = (nextProps: any, nextState: any) => {
/*
Checks to see if at least one of the following changed:
@@ -212,10 +232,13 @@ class CategoryValue extends React.Component<{}, State> {
const valueSelectionChange = isSelected !== newIsSelected;
const colorAccessorChange =
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(props as any).colorAccessor !== nextProps.colorAccessor;
const annotationsChange =
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(props as any).annotations !== nextProps.annotations;
const editingLabel = state.editedLabelText !== nextState.editedLabelText;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const dilationChange = (props as any).isDilated !== nextProps.isDilated;
const count = categorySummary.categoryValueCounts[categoryIndex];
@@ -227,6 +250,7 @@ class CategoryValue extends React.Component<{}, State> {
// if any one changes, but only for the currently colored-by category.
const colorMightHaveChanged =
nextProps.colorAccessor === nextProps.metadataField &&
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(props as any).categorySummary !== nextProps.categorySummary;
return (
@@ -241,6 +265,7 @@ class CategoryValue extends React.Component<{}, State> {
);
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
toggleOn = () => {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
@@ -264,6 +289,7 @@ class CategoryValue extends React.Component<{}, State> {
);
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleMouseEnter = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, metadataField, categoryIndex, label } = this.props;
@@ -275,6 +301,7 @@ class CategoryValue extends React.Component<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleMouseExit = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, metadataField, categoryIndex, label } = this.props;
@@ -286,23 +313,33 @@ class CategoryValue extends React.Component<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleTextChange = (text: any) => {
this.setState({ editedLabelText: text });
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleChoice = (e: any) => {
/* Blueprint Suggest format */
this.setState({ editedLabelText: e.target });
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
createHistogramBins = (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
metadataField: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
categoryData: any,
// @ts-expect-error ts-migrate(6133) FIXME: 'colorAccessor' is declared but its value is never... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
colorAccessor: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
colorData: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
categoryValue: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
width: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
height: any
) => {
/*
@@ -337,15 +374,24 @@ class CategoryValue extends React.Component<{}, State> {
};
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
createStackedGraphBins = (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
metadataField: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
categoryData: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
colorAccessor: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
colorData: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
categoryValue: any,
// @ts-expect-error ts-migrate(6133) FIXME: 'colorTable' is declared but its value is never re... Remove this comment to see the full error message
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
colorTable: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
schema: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
width: any
) => {
/*
@@ -383,10 +429,12 @@ class CategoryValue extends React.Component<{}, State> {
return null;
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
currentLabelAsString() {
return _currentLabelAsString(this.props);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
isAddCurrentSelectionDisabled(crossfilter: any, category: any, value: any) {
/*
disable "add current selection to label", if one of the following is true:
@@ -411,6 +459,7 @@ class CategoryValue extends React.Component<{}, State> {
return false;
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
renderMiniStackedBar = () => {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'colorAccessor' does not exist on type 'R... Remove this comment to see the full error message
@@ -470,6 +519,7 @@ class CategoryValue extends React.Component<{}, State> {
);
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
renderMiniHistogram = () => {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'colorAccessor' does not exist on type 'R... Remove this comment to see the full error message
@@ -528,6 +578,7 @@ class CategoryValue extends React.Component<{}, State> {
);
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'metadataField' does not exist on type 'R... Remove this comment to see the full error message
client/src/components/categorical/value/occupancy.tsx
+5
View File
@@ -10,15 +10,18 @@ import {
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
schema: (state as any).annoMatrix?.schema,
}))
class Occupancy extends React.PureComponent {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
canvas: any;
_WIDTH = 100;
_HEIGHT = 11;
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
createHistogram = () => {
/*
Knowing that colorScale is based off continous data,
@@ -68,6 +71,7 @@ class Occupancy extends React.PureComponent {
}
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
createOccupancyStack = () => {
/*
Knowing that the color scale is based off of catagorical data,
@@ -126,6 +130,7 @@ class Occupancy extends React.PureComponent {
}
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'colorAccessor' does not exist on type 'R... Remove this comment to see the full error message
const { colorAccessor, categoryValue, colorByIsCategorical } = this.props;
client/src/components/continuous/continuous.tsx
+7
View File
@@ -6,9 +6,11 @@ import HistogramBrush from "../brushableHistogram";
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
schema: (state as any).annoMatrix?.schema,
}))
class Continuous extends React.PureComponent {
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
/* initial value for iterator to simulate index, ranges is an object */
// @ts-expect-error ts-migrate(2339) FIXME: Property 'schema' does not exist on type 'Readonly... Remove this comment to see the full error message
@@ -16,12 +18,17 @@ class Continuous extends React.PureComponent {
if (!schema) return null;
const obsIndex = schema.annotations.obs.index;
const allContinuousNames = schema.annotations.obs.columns
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.filter((col: any) => col.type === "int32" || col.type === "float32")
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.filter((col: any) => col.name !== obsIndex)
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.filter((col: any) => !col.writable) // skip user annotations - they will be treated as categorical
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.map((col: any) => col.name);
return (
<div>
{/* eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS. */}
{allContinuousNames.map((key: any, zebra: any) => (
// @ts-expect-error ts-migrate(2769) FIXME: No overload matches this call.
<HistogramBrush key={key} field={key} isObs zebra={zebra % 2 === 0} />
client/src/components/continuous/setupParallelCoordinates.ts
+1
View File
@@ -5,6 +5,7 @@
******************************************/
import * as d3 from "d3";
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
const setupParallelCoordinates = (width: any, height: any, margin: any) => {
const container = d3.select("#parcoords");
client/src/components/continuous/util.ts
+7
View File
@@ -12,13 +12,16 @@ export const innerHeight = height - 2;
export const devicePixelRatio = window.devicePixelRatio || 1;
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const createDimensions = (data: any) => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const newArr: any = [];
each(data, (value, key) => {
if (value.range) {
newArr.push({
key /* room for confusion: lodash calls this key, it's also the name of the property parallel coords code is looking for */,
type: {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
within: (d: any, extent: any, dim: any) =>
extent[0] <= dim.scale(d) && dim.scale(d) <= extent[1],
},
@@ -35,13 +38,17 @@ export const createDimensions = (data: any) => {
// @ts-expect-error ts-migrate(2554) FIXME: Expected 1 arguments, but got 0.
export const yAxis = d3.axisLeft();
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export const brushstart = () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(d3 as any).event.sourceEvent.stopPropagation();
};
// Unused.
// export const d3_functor = v => (typeof v === "function" ? v : () => v);
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const project = (d: any, dimensions: any, xscale: any) =>
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
dimensions.map((p: any, i: any) => {
// check if data element has property and contains a value
if (!(p.key in d) || d[p.key] === null) return null;
client/src/components/continuousLegend/index.tsx
+6
View File
@@ -9,6 +9,7 @@ import {
} from "../../util/stateManager/colorHelpers";
// create continuous color legend
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const continuous = (selectorId: any, colorScale: any, colorAccessor: any) => {
const legendHeight = 200;
const legendWidth = 80;
@@ -110,11 +111,15 @@ const continuous = (selectorId: any, colorScale: any, colorAccessor: any) => {
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
annoMatrix: (state as any).annoMatrix,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
colors: (state as any).colors,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
genesets: (state as any).genesets.genesets,
}))
class ContinuousLegend extends React.Component {
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
async componentDidUpdate(prevProps: any) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Read... Remove this comment to see the full error message
const { annoMatrix, colors, genesets } = this.props;
@@ -157,6 +162,7 @@ class ContinuousLegend extends React.Component {
}
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
return (
<div
client/src/components/embedding/index.tsx
+13
View File
@@ -15,28 +15,36 @@ import * as globals from "../../globals";
import actions from "../../actions";
import { getDiscreteCellEmbeddingRowIndex } from "../../util/stateManager/viewStackHelpers";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type EmbeddingState = any;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => {
return {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
layoutChoice: (state as any).layoutChoice,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
schema: (state as any).annoMatrix?.schema,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
crossfilter: (state as any).obsCrossfilter,
};
})
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class Embedding extends React.PureComponent<{}, EmbeddingState> {
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleLayoutChoiceChange = (e: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
dispatch(actions.layoutChoiceAction(e.currentTarget.value));
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'layoutChoice' does not exist on type 'Re... Remove this comment to see the full error message
const { layoutChoice, schema, crossfilter } = this.props;
@@ -105,8 +113,10 @@ class Embedding extends React.PureComponent<{}, EmbeddingState> {
export default Embedding;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const loadAllEmbeddingCounts = async ({ annoMatrix, available }: any) => {
const embeddings = await Promise.all(
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
available.map((name: any) => annoMatrix.base().fetch("emb", name))
);
// @ts-expect-error ts-migrate(7006) FIXME: Parameter 'name' implicitly has an 'any' type.
@@ -117,6 +127,7 @@ const loadAllEmbeddingCounts = async ({ annoMatrix, available }: any) => {
}));
};
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const EmbeddingChoices = ({ onChange, annoMatrix, layoutChoice }: any) => {
const { available } = layoutChoice;
const { data, error, isPending } = useAsync({
@@ -133,6 +144,7 @@ const EmbeddingChoices = ({ onChange, annoMatrix, layoutChoice }: any) => {
/* still loading, or errored out - just omit counts (TODO: spinner?) */
return (
<RadioGroup onChange={onChange} selectedValue={layoutChoice.current}>
{/* eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS. */}
{layoutChoice.available.map((name: any) => (
<Radio label={`${name}`} value={name} key={name} />
))}
@@ -142,6 +154,7 @@ const EmbeddingChoices = ({ onChange, annoMatrix, layoutChoice }: any) => {
if (data) {
return (
<RadioGroup onChange={onChange} selectedValue={layoutChoice.current}>
{/* eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS. */}
{data.map((summary: any) => {
const { discreteCellIndex, embeddingName } = summary;
const sizeHint = `${discreteCellIndex.size()} cells`;
client/src/components/framework/container.tsx
+1
View File
@@ -1,5 +1,6 @@
import React from "react";
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
function Container(props: any) {
const { children } = props;
return (
client/src/components/framework/layout.tsx
+3
View File
@@ -2,6 +2,7 @@ import React from "react";
import * as globals from "../../globals";
class Layout extends React.Component {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
viewportRef: any;
/*
Layout - this react component contains all the layout style and logic for the application once it has loaded.
@@ -14,6 +15,7 @@ class Layout extends React.Component {
should be.
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
componentDidMount() {
/*
This is a bit of a hack. In order for the graph to size correctly, it needs to know the size of the parent
@@ -22,6 +24,7 @@ class Layout extends React.Component {
this.forceUpdate();
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const { children } = this.props;
// @ts-expect-error ts-migrate(2488) FIXME: Type 'ReactNode' must have a '[Symbol.iterator]()'... Remove this comment to see the full error message
client/src/components/framework/logo.tsx
+1
View File
@@ -1,6 +1,7 @@
import React from "react";
import * as globals from "../../globals";
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
const Logo = (props: any) => {
const { size } = props;
return (
client/src/components/framework/toasters.ts
+5
View File
@@ -11,6 +11,7 @@ const ToastTopCenter = Toaster.create({
/*
A "user" error - eg, bad input
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const postUserErrorToast = (message: any) =>
ToastTopCenter.show({ message, intent: Intent.WARNING });
@@ -18,12 +19,14 @@ export const postUserErrorToast = (message: any) =>
A toast the user must dismiss manually, because they need to act on its information,
ie., 8 bulk add genes out of 40 were bad. Manually see which ones and fix.
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const keepAroundErrorToast = (message: any) =>
ToastTopCenter.show({ message, timeout: 0, intent: Intent.WARNING });
/*
a hard network error
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const postNetworkErrorToast = (message: any, key = undefined) =>
ToastTopCenter.show(
{
@@ -37,6 +40,7 @@ export const postNetworkErrorToast = (message: any, key = undefined) =>
/*
Async message to user
*/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const postAsyncSuccessToast = (message: any) =>
ToastTopCenter.show({
message,
@@ -44,6 +48,7 @@ export const postAsyncSuccessToast = (message: any) =>
intent: Intent.SUCCESS,
});
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export const postAsyncFailureToast = (message: any) =>
ToastTopCenter.show({
message,
client/src/components/geneExpression/gene.tsx
+12
View File
@@ -9,6 +9,7 @@ import actions from "../../actions";
const MINI_HISTOGRAM_WIDTH = 110;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@@ -17,14 +18,19 @@ type State = any;
const { gene } = ownProps;
return {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
isColorAccessor: (state as any).colors.colorAccessor === gene,
isScatterplotXXaccessor:
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(state as any).controls.scatterplotXXaccessor === gene,
isScatterplotYYaccessor:
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(state as any).controls.scatterplotYYaccessor === gene,
};
})
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class Gene extends React.Component<{}, State> {
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {
@@ -32,17 +38,20 @@ class Gene extends React.Component<{}, State> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
onColorChangeClick = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, gene } = this.props;
dispatch(actions.requestSingleGeneExpressionCountsForColoringPOST(gene));
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleGeneExpandClick = () => {
const { geneIsExpanded } = this.state;
this.setState({ geneIsExpanded: !geneIsExpanded });
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleSetGeneAsScatterplotX = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, gene } = this.props;
@@ -52,6 +61,7 @@ class Gene extends React.Component<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleSetGeneAsScatterplotY = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, gene } = this.props;
@@ -61,12 +71,14 @@ class Gene extends React.Component<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleDeleteGeneFromSet = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, gene, geneset } = this.props;
dispatch(actions.genesetDeleteGenes(geneset, [gene]));
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'gene' does not exist on type 'Readonly<{... Remove this comment to see the full error message
client/src/components/geneExpression/geneSet.tsx
+6
View File
@@ -9,9 +9,12 @@ import HistogramBrush from "../brushableHistogram";
import { diffexpPopNamePrefix1, diffexpPopNamePrefix2 } from "../../globals";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class GeneSet extends React.Component<{}, State> {
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {
@@ -19,11 +22,13 @@ class GeneSet extends React.Component<{}, State> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
onGenesetMenuClick = () => {
const { isOpen } = this.state;
this.setState({ isOpen: !isOpen });
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
renderGenes() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'setName' does not exist on type 'Readonl... Remove this comment to see the full error message
const { setName, setGenes } = this.props;
@@ -46,6 +51,7 @@ class GeneSet extends React.Component<{}, State> {
);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'setName' does not exist on type 'Readonl... Remove this comment to see the full error message
const { setName, genesetDescription, setGenes } = this.props;
client/src/components/geneExpression/index.tsx
+10
View File
@@ -7,20 +7,25 @@ import GeneSet from "./geneSet";
import QuickGene from "./quickGene";
import CreateGenesetDialogue from "./menus/createGenesetDialogue";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => {
return {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
genesets: (state as any).genesets.genesets,
};
})
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class GeneExpression extends React.Component<{}, State> {
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = { geneSetsExpanded: true };
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
renderGeneSets = () => {
const sets = [];
// @ts-expect-error ts-migrate(2339) FIXME: Property 'genesets' does not exist on type 'Readon... Remove this comment to see the full error message
@@ -40,24 +45,29 @@ class GeneExpression extends React.Component<{}, State> {
return sets;
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleActivateCreateGenesetMode = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
const { geneSetsExpanded } = this.state;
dispatch({ type: "geneset: activate add new geneset mode" });
if (!geneSetsExpanded) {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
this.setState((state: any) => {
return { ...state, geneSetsExpanded: true };
});
}
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleExpandGeneSets = () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
this.setState((state: any) => {
return { ...state, geneSetsExpanded: !state.geneSetsExpanded };
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const { geneSetsExpanded } = this.state;
return (
client/src/components/geneExpression/menus/addGeneToGenesetDialogue.tsx
+9
View File
@@ -5,13 +5,17 @@ import LabelInput from "../../labelInput";
import parseBulkGeneString from "../../../util/parseBulkGeneString";
import actions from "../../../actions";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
genesetsUI: (state as any).genesetsUI,
}))
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class AddGeneToGenesetDialogue extends React.PureComponent<{}, State> {
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {
@@ -19,6 +23,7 @@ class AddGeneToGenesetDialogue extends React.PureComponent<{}, State> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
disableAddGeneMode = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
@@ -27,10 +32,12 @@ class AddGeneToGenesetDialogue extends React.PureComponent<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleAddGeneToGeneSet = (e: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'geneset' does not exist on type 'Readonl... Remove this comment to see the full error message
const { geneset, dispatch } = this.props;
const { genesToAdd } = this.state;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const genesTmpHardcodedFormat: any = [];
const genesArrayFromString = parseBulkGeneString(genesToAdd);
genesArrayFromString.forEach((_gene) => {
@@ -45,10 +52,12 @@ class AddGeneToGenesetDialogue extends React.PureComponent<{}, State> {
if (e) e.preventDefault();
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleChange = (e: any) => {
this.setState({ genesToAdd: e });
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'geneset' does not exist on type 'Readonl... Remove this comment to see the full error message
const { geneset, genesetsUI } = this.props;
client/src/components/geneExpression/menus/addGenes.tsx
+18 -1
View File
@@ -20,6 +20,7 @@ import {
import { memoize } from "../../../util/dataframe/util";
import parseBulkGeneString from "../../../util/parseBulkGeneString";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const renderGene = (fuzzySortResult: any, { handleClick, modifiers }: any) => {
if (!modifiers.matchesPredicate) {
return null;
@@ -33,6 +34,7 @@ const renderGene = (fuzzySortResult: any, { handleClick, modifiers }: any) => {
disabled={modifiers.disabled}
data-testid={`suggest-menu-item-${geneName}`}
key={geneName}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
onClick={(g: any /* this fires when user clicks a menu item */) =>
handleClick(g)
}
@@ -41,6 +43,7 @@ const renderGene = (fuzzySortResult: any, { handleClick, modifiers }: any) => {
);
};
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const filterGenes = (query: any, genes: any) =>
/* fires on load, once, and then for each character typed into the input */
fuzzysort.go(query, genes, {
@@ -48,17 +51,23 @@ const filterGenes = (query: any, genes: any) =>
threshold: -10000, // don't return bad results
});
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type AddGenesState = any;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => {
return {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
annoMatrix: (state as any).annoMatrix,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
userDefinedGenes: (state as any).controls.userDefinedGenes,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
userDefinedGenesLoading: (state as any).controls.userDefinedGenesLoading,
};
})
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class AddGenes extends React.Component<{}, AddGenesState> {
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {
@@ -70,15 +79,18 @@ class AddGenes extends React.Component<{}, AddGenesState> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
componentDidMount() {
// @ts-expect-error ts-migrate(2554) FIXME: Expected 1 arguments, but got 0.
this.updateState();
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
componentDidUpdate(prevProps: {}) {
this.updateState(prevProps);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleClick(g: any) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, userDefinedGenes } = this.props;
@@ -100,6 +112,7 @@ class AddGenes extends React.Component<{}, AddGenesState> {
}
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
_genesToUpper = (listGenes: any) => {
// Has to be a Map to preserve index
const upperGenes = new Map();
@@ -110,9 +123,10 @@ class AddGenes extends React.Component<{}, AddGenesState> {
return upperGenes;
};
// eslint-disable-next-line react/sort-comp -- memo requires a defined _genesToUpper
// eslint-disable-next-line react/sort-comp, @typescript-eslint/no-explicit-any -- memo requires a defined _genesToUpper
_memoGenesToUpper = memoize(this._genesToUpper, (arr: any) => arr);
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleBulkAddClick = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, userDefinedGenes } = this.props;
@@ -164,6 +178,7 @@ class AddGenes extends React.Component<{}, AddGenesState> {
return undefined;
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
async updateState(prevProps: any) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Read... Remove this comment to see the full error message
const { annoMatrix } = this.props;
@@ -186,6 +201,7 @@ class AddGenes extends React.Component<{}, AddGenesState> {
}
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
placeholderGeneNames() {
/*
return a string containing gene name suggestions for use as a user hint.
@@ -215,6 +231,7 @@ class AddGenes extends React.Component<{}, AddGenesState> {
return "Apod, Cd74, ...";
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'userDefinedGenesLoading' does not exist ... Remove this comment to see the full error message
const { userDefinedGenesLoading } = this.props;
client/src/components/geneExpression/menus/createGenesetDialogue.tsx
+18
View File
@@ -7,17 +7,25 @@ import { Tooltip2 } from "@blueprintjs/popover2";
import LabelInput from "../../labelInput";
import actions from "../../../actions";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
annotations: (state as any).annotations,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
schema: (state as any).annoMatrix?.schema,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
obsCrossfilter: (state as any).obsCrossfilter,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
genesets: (state as any).genesets.genesets,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
genesetsUI: (state as any).genesetsUI,
}))
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class CreateGenesetDialogue extends React.PureComponent<{}, State> {
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {
@@ -27,6 +35,7 @@ class CreateGenesetDialogue extends React.PureComponent<{}, State> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
disableCreateGenesetMode = (e: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
@@ -42,6 +51,7 @@ class CreateGenesetDialogue extends React.PureComponent<{}, State> {
if (e) e.preventDefault();
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
createGeneset = (e: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
@@ -56,6 +66,7 @@ class CreateGenesetDialogue extends React.PureComponent<{}, State> {
genesetDescription,
});
if (genesToPopulateGeneset) {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const genesTmpHardcodedFormat: any = [];
const genesArrayFromString = pull(
uniq(genesToPopulateGeneset.split(/[ ,]+/)),
@@ -78,10 +89,12 @@ class CreateGenesetDialogue extends React.PureComponent<{}, State> {
e.preventDefault();
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
genesetNameError = () => {
return false;
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleChange = (e: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'genesets' does not exist on type 'Readon... Remove this comment to see the full error message
const { genesets } = this.props;
@@ -89,20 +102,24 @@ class CreateGenesetDialogue extends React.PureComponent<{}, State> {
this.validate(e, genesets);
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleGenesetInputChange = (e: any) => {
this.setState({ genesToPopulateGeneset: e });
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleDescriptionInputChange = (e: any) => {
this.setState({ genesetDescription: e });
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
instruction = (genesetName: any, genesets: any) => {
return genesets.has(genesetName)
? "Gene set name must be unique."
: "New, unique gene set name";
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
validate = (genesetName: any, genesets: any) => {
if (genesets.has(genesetName)) {
this.setState({
@@ -127,6 +144,7 @@ class CreateGenesetDialogue extends React.PureComponent<{}, State> {
return true;
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const { genesetName, nameErrorMessage } = this.state;
// @ts-expect-error ts-migrate(2339) FIXME: Property 'genesetsUI' does not exist on type 'Read... Remove this comment to see the full error message
client/src/components/geneExpression/menus/editGenesetNameDialogue.tsx
+15
View File
@@ -3,17 +3,25 @@ import { connect } from "react-redux";
import AnnoDialog from "../../annoDialog";
import LabelInput from "../../labelInput";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
annotations: (state as any).annotations,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
schema: (state as any).annoMatrix?.schema,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
obsCrossfilter: (state as any).obsCrossfilter,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
genesetsUI: (state as any).genesetsUI,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
genesets: (state as any).genesets.genesets,
}))
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class RenameGeneset extends React.PureComponent<{}, State> {
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {
@@ -24,6 +32,7 @@ class RenameGeneset extends React.PureComponent<{}, State> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
disableEditGenesetNameMode = (e: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
@@ -37,6 +46,7 @@ class RenameGeneset extends React.PureComponent<{}, State> {
if (e) e.preventDefault();
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
renameGeneset = (e: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, genesetsUI } = this.props;
@@ -55,18 +65,22 @@ class RenameGeneset extends React.PureComponent<{}, State> {
e.preventDefault();
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
genesetNameError = () => {
return false;
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleChange = (e: any) => {
this.setState({ newGenesetName: e });
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleChangeDescription = (e: any) => {
this.setState({ newGenesetDescription: e });
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
validate = (genesetName: any, genesets: any) => {
return (
!genesets.has(genesetName) &&
@@ -76,6 +90,7 @@ class RenameGeneset extends React.PureComponent<{}, State> {
);
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const { newGenesetName, newGenesetDescription } = this.state;
const {
client/src/components/geneExpression/menus/genesetMenus.tsx
+10
View File
@@ -17,21 +17,27 @@ import * as globals from "../../../globals";
import actions from "../../../actions";
import AddGeneToGenesetDialogue from "./addGeneToGenesetDialogue";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => {
return {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
genesetsUI: (state as any).genesetsUI,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
colorAccessor: (state as any).colors.colorAccessor,
};
})
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class GenesetMenus extends React.PureComponent<{}, State> {
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
activateAddGeneToGenesetMode = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, geneset } = this.props;
@@ -41,6 +47,7 @@ class GenesetMenus extends React.PureComponent<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
activateEditGenesetNameMode = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, geneset } = this.props;
@@ -51,6 +58,7 @@ class GenesetMenus extends React.PureComponent<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleColorByEntireGeneset = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, geneset } = this.props;
@@ -61,12 +69,14 @@ class GenesetMenus extends React.PureComponent<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleDeleteGeneset = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, geneset } = this.props;
dispatch(actions.genesetDelete(geneset));
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'geneset' does not exist on type 'Readonl... Remove this comment to see the full error message
const { geneset, genesetsEditable, createText, colorAccessor } = this.props;
client/src/components/geneExpression/quickGene.tsx
+13
View File
@@ -10,6 +10,7 @@ import Gene from "./gene";
import { postUserErrorToast } from "../framework/toasters";
import actions from "../../actions";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const usePrevious = (value: any) => {
const ref = useRef();
useEffect(() => {
@@ -18,6 +19,7 @@ const usePrevious = (value: any) => {
return ref.current;
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
function QuickGene() {
const dispatch = useDispatch();
@@ -28,8 +30,11 @@ function QuickGene() {
const { annoMatrix, userDefinedGenes, userDefinedGenesLoading } = useSelector(
(state) => {
return {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
annoMatrix: (state as any).annoMatrix,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
userDefinedGenes: (state as any).controls.userDefinedGenes,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
userDefinedGenesLoading: (state as any).controls
.userDefinedGenesLoading,
};
@@ -41,6 +46,7 @@ function QuickGene() {
// @ts-expect-error ts-migrate(2345) FIXME: Argument of type '() => Promise<void>' is not assi... Remove this comment to see the full error message
useEffect(async () => {
if (!annoMatrix) return;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
if (annoMatrix !== (prevProps as any)?.annoMatrix) {
const { schema } = annoMatrix;
const varIndex = schema.annotations.var.index;
@@ -60,7 +66,9 @@ function QuickGene() {
const handleExpand = () => setIsExpanded(!isExpanded);
const renderGene = (
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
fuzzySortResult: any,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
{ handleClick, modifiers }: any
) => {
if (!modifiers.matchesPredicate) {
@@ -75,6 +83,7 @@ function QuickGene() {
disabled={modifiers.disabled}
data-testid={`suggest-menu-item-${geneName}`}
key={geneName}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
onClick={(g: any /* this fires when user clicks a menu item */) =>
handleClick(g)
}
@@ -83,6 +92,7 @@ function QuickGene() {
);
};
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const handleClick = (g: any) => {
if (!g) return;
const gene = g.target;
@@ -98,6 +108,7 @@ function QuickGene() {
}
};
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const filterGenes = (query: any, genes: any) =>
/* fires on load, once, and then for each character typed into the input */
fuzzysort.go(query, genes, {
@@ -105,11 +116,13 @@ function QuickGene() {
threshold: -10000, // don't return bad results
});
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const removeGene = (gene: any) => () => {
dispatch({ type: "clear user defined gene", data: gene });
};
const QuickGenes = useMemo(() => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
return userDefinedGenes.map((gene: any) => {
return (
<Gene
client/src/components/graph/drawPointsRegl.ts
+1
View File
@@ -1,5 +1,6 @@
import { glPointFlags, glPointSize } from "../../util/glHelpers";
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export default function drawPointsRegl(regl: any) {
return regl({
vert: `
client/src/components/graph/graph.tsx
+63
View File
@@ -34,6 +34,7 @@ Simple 2D transforms control all point painting. There are three:
* camera - apply a 2D camera transformation (pan, zoom)
* projection - apply any transformation required for screen size and layout
*/
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function createProjectionTF(viewportWidth: any, viewportHeight: any) {
/*
the projection transform accounts for the screen size & other layout
@@ -68,21 +69,33 @@ function createModelTF() {
return m;
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type GraphState = any;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
annoMatrix: (state as any).annoMatrix,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
crossfilter: (state as any).obsCrossfilter,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
selectionTool: (state as any).graphSelection.tool,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
currentSelection: (state as any).graphSelection.selection,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
layoutChoice: (state as any).layoutChoice,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
graphInteractionMode: (state as any).controls.graphInteractionMode,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
colors: (state as any).colors,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
pointDilation: (state as any).pointDilation,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
genesets: (state as any).genesets.genesets,
}))
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class Graph extends React.Component<{}, GraphState> {
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
static createReglState(canvas: any) {
/*
Must be created for each canvas
@@ -108,12 +121,15 @@ class Graph extends React.Component<{}, GraphState> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
static watchAsync(props: any, prevProps: any) {
return !shallowEqual(props.watchProps, prevProps.watchProps);
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
cachedAsyncProps: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
reglCanvas: any;
computePointPositions = memoize((X, Y, modelTF) => {
@@ -214,6 +230,7 @@ class Graph extends React.Component<{}, GraphState> {
}
);
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
const viewport = this.getViewportDimensions();
@@ -255,10 +272,12 @@ class Graph extends React.Component<{}, GraphState> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
componentDidMount() {
window.addEventListener("resize", this.handleResize);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
componentDidUpdate(prevProps: {}, prevState: GraphState) {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'selectionTool' does not exist on type 'R... Remove this comment to see the full error message
@@ -312,10 +331,12 @@ class Graph extends React.Component<{}, GraphState> {
}
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
componentWillUnmount() {
window.removeEventListener("resize", this.handleResize);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleResize = () => {
const { state } = this.state;
const viewport = this.getViewportDimensions();
@@ -327,17 +348,20 @@ class Graph extends React.Component<{}, GraphState> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleCanvasEvent = (e: any) => {
const { camera, projectionTF } = this.state;
if (e.type !== "wheel") e.preventDefault();
if (camera.handleEvent(e, projectionTF)) {
this.renderCanvas();
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
this.setState((state: any) => {
return { ...state, updateOverlay: !state.updateOverlay };
});
}
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleBrushDragAction() {
/*
event describing brush position:
@@ -369,6 +393,7 @@ class Graph extends React.Component<{}, GraphState> {
);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleBrushStartAction() {
// Ignore programatically generated events.
// @ts-expect-error ts-migrate(2339) FIXME: Property 'event' does not exist on type 'typeof im... Remove this comment to see the full error message
@@ -378,6 +403,7 @@ class Graph extends React.Component<{}, GraphState> {
dispatch(actions.graphBrushStartAction());
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleBrushEndAction() {
// Ignore programatically generated events.
// @ts-expect-error ts-migrate(2339) FIXME: Property 'event' does not exist on type 'typeof im... Remove this comment to see the full error message
@@ -410,12 +436,14 @@ class Graph extends React.Component<{}, GraphState> {
}
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleBrushDeselectAction() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, layoutChoice } = this.props;
dispatch(actions.graphBrushDeselectAction(layoutChoice.current));
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleLassoStart() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, layoutChoice } = this.props;
@@ -424,6 +452,7 @@ class Graph extends React.Component<{}, GraphState> {
}
// when a lasso is completed, filter to the points within the lasso polygon
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleLassoEnd(polygon: any) {
const minimumPolygonArea = 10;
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
@@ -438,24 +467,28 @@ class Graph extends React.Component<{}, GraphState> {
dispatch(
actions.graphLassoEndAction(
layoutChoice.current,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
polygon.map((xy: any) => this.mapScreenToPoint(xy))
)
);
}
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleLassoCancel() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, layoutChoice } = this.props;
dispatch(actions.graphLassoCancelAction(layoutChoice.current));
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleLassoDeselectAction() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, layoutChoice } = this.props;
dispatch(actions.graphLassoDeselectAction(layoutChoice.current));
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleDeselectAction() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'selectionTool' does not exist on type 'R... Remove this comment to see the full error message
const { selectionTool } = this.props;
@@ -463,6 +496,7 @@ class Graph extends React.Component<{}, GraphState> {
if (selectionTool === "lasso") this.handleLassoDeselectAction();
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleOpacityRangeChange(e: any) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
@@ -472,6 +506,7 @@ class Graph extends React.Component<{}, GraphState> {
});
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
setReglCanvas = (canvas: any) => {
this.reglCanvas = canvas;
this.setState({
@@ -479,6 +514,7 @@ class Graph extends React.Component<{}, GraphState> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
getViewportDimensions = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'viewportRef' does not exist on type 'Rea... Remove this comment to see the full error message
const { viewportRef } = this.props;
@@ -488,6 +524,7 @@ class Graph extends React.Component<{}, GraphState> {
};
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
createToolSVG = () => {
/*
Called from componentDidUpdate. Create the tool SVG, and return any
@@ -531,6 +568,7 @@ class Graph extends React.Component<{}, GraphState> {
return { toolSVG: newToolSVG, tool, container };
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
fetchAsyncProps = async (props: any) => {
const {
annoMatrix,
@@ -578,10 +616,15 @@ class Graph extends React.Component<{}, GraphState> {
};
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
async fetchData(
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
annoMatrix: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
layoutChoice: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
colors: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
pointDilation: any
) {
/*
@@ -610,6 +653,7 @@ class Graph extends React.Component<{}, GraphState> {
return Promise.all(promises);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
brushToolUpdate(tool: any, container: any) {
/*
this is called from componentDidUpdate(), so be very careful using
@@ -653,6 +697,7 @@ class Graph extends React.Component<{}, GraphState> {
}
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
lassoToolUpdate(tool: any) {
/*
this is called from componentDidUpdate(), so be very careful using
@@ -664,6 +709,7 @@ class Graph extends React.Component<{}, GraphState> {
/*
if there is a current selection, make sure the lasso tool matches
*/
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const polygon = currentSelection.polygon.map((p: any) =>
this.mapPointToScreen(p)
);
@@ -673,6 +719,7 @@ class Graph extends React.Component<{}, GraphState> {
}
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
selectionToolUpdate(tool: any, container: any) {
/*
this is called from componentDidUpdate(), so be very careful using
@@ -694,6 +741,7 @@ class Graph extends React.Component<{}, GraphState> {
}
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
mapScreenToPoint(pin: any) {
/*
Map an XY coordinates from screen domain to cell/point range,
@@ -712,6 +760,7 @@ class Graph extends React.Component<{}, GraphState> {
return xy;
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
mapPointToScreen(xyCell: any) {
/*
Map an XY coordinate from cell/point domain to screen range. Inverse
@@ -749,6 +798,7 @@ class Graph extends React.Component<{}, GraphState> {
);
});
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
updateReglAndRender(asyncProps: any, prevAsyncProps: any) {
const { positions, colors, flags, height, width } = asyncProps;
this.cachedAsyncProps = asyncProps;
@@ -772,6 +822,7 @@ class Graph extends React.Component<{}, GraphState> {
if (needToRenderCanvas) this.renderCanvas();
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
updateColorTable(colors: any, colorDf: any) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Read... Remove this comment to see the full error message
const { annoMatrix } = this.props;
@@ -796,6 +847,7 @@ class Graph extends React.Component<{}, GraphState> {
);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
createColorByQuery(colors: any) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Read... Remove this comment to see the full error message
const { annoMatrix, genesets } = this.props;
@@ -804,13 +856,21 @@ class Graph extends React.Component<{}, GraphState> {
return createColorQuery(colorMode, colorAccessor, schema, genesets);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
renderPoints(
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
regl: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
drawPoints: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
colorBuffer: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
pointBuffer: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
flagBuffer: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
camera: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
projectionTF: any
) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Read... Remove this comment to see the full error message
@@ -838,6 +898,7 @@ class Graph extends React.Component<{}, GraphState> {
regl._gl.flush();
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'graphInteractionMode' does not exist on ... Remove this comment to see the full error message
@@ -957,6 +1018,7 @@ class Graph extends React.Component<{}, GraphState> {
}
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const ErrorLoading = ({ displayName, error, width, height }: any) => {
console.log(error); // log to console as this is an unepected error
return (
@@ -973,6 +1035,7 @@ const ErrorLoading = ({ displayName, error, width, height }: any) => {
);
};
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const StillLoading = ({ displayName, width, height }: any) => {
/*
Render a busy/loading indicator
client/src/components/graph/overlays/centroidLabels.tsx
+17 -1
View File
@@ -8,19 +8,28 @@ import { createColorQuery } from "../../../util/stateManager/colorHelpers";
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
annoMatrix: (state as any).annoMatrix,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
colors: (state as any).colors,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
layoutChoice: (state as any).layoutChoice,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
dilatedValue: (state as any).pointDilation.categoryField,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
categoricalSelection: (state as any).categoricalSelection,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
showLabels: (state as any).centroidLabels?.showLabels,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
genesets: (state as any).genesets.genesets,
}))
export default class CentroidLabels extends PureComponent {
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
static watchAsync(props: any, prevProps: any) {
return !shallowEqual(props.watchProps, prevProps.watchProps);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
fetchAsyncProps = async (props: any) => {
const {
annoMatrix,
@@ -55,6 +64,7 @@ export default class CentroidLabels extends PureComponent {
};
// @ts-expect-error ts-migrate(6133) FIXME: 'e' is declared but its value is never read.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleMouseEnter = (e: any, colorAccessor: any, label: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
@@ -66,6 +76,7 @@ export default class CentroidLabels extends PureComponent {
};
// @ts-expect-error ts-migrate(6133) FIXME: 'e' is declared but its value is never read.
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleMouseOut = (e: any, colorAccessor: any, label: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
@@ -76,6 +87,7 @@ export default class CentroidLabels extends PureComponent {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
colorByQuery() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Read... Remove this comment to see the full error message
const { annoMatrix, colors, genesets } = this.props;
@@ -84,6 +96,7 @@ export default class CentroidLabels extends PureComponent {
return createColorQuery(colorMode, colorAccessor, schema, genesets);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
async fetchData() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Read... Remove this comment to see the full error message
const { annoMatrix, layoutChoice } = this.props;
@@ -101,6 +114,7 @@ export default class CentroidLabels extends PureComponent {
return Promise.all(promises);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'inverseTransform' does not exist on type... Remove this comment to see the full error message
@@ -134,10 +148,12 @@ export default class CentroidLabels extends PureComponent {
<Async.Fulfilled>
{(asyncProps) => {
if (!showLabels) return null;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const labelSVGS: any = [];
const deselectOpacity = 0.375;
// @ts-expect-error ts-migrate(2339) FIXME: Property 'category' does not exist on type 'unknow... Remove this comment to see the full error message
const { category, colorAccessor, labels } = asyncProps;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
labels.forEach((coords: any, label: any) => {
const selected = category.get(label) ?? true;
// Mirror LSB middle truncation
@@ -181,7 +197,7 @@ const Label = ({
colorAccessor,
displayLabel,
onMouseEnter,
onMouseOut,
onMouseOut, // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
}: any) => {
/*
Render a label at a given coordinate.
client/src/components/graph/overlays/graphOverlayLayer.tsx
+8
View File
@@ -3,8 +3,10 @@ import React, { PureComponent, cloneElement } from "react";
// @ts-expect-error ts-migrate(2307) FIXME: Cannot find module '../graph.css' or its correspon... Remove this comment to see the full error message
import styles from "../graph.css";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
export default class GraphOverlayLayer extends PureComponent<{}, State> {
/*
This component takes its children (assumed in the data coordinate space ([0, 1] range, origin in bottom left corner))
@@ -12,6 +14,7 @@ export default class GraphOverlayLayer extends PureComponent<{}, State> {
Children are assigned in the graph component and must implement onDisplayChange()
*/
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {
@@ -19,6 +22,7 @@ export default class GraphOverlayLayer extends PureComponent<{}, State> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
matrixToTransformString = (m: any) => {
/*
Translates the gl-matrix mat3 to SVG matrix transform style
@@ -31,17 +35,21 @@ export default class GraphOverlayLayer extends PureComponent<{}, State> {
return `matrix(${m[0]} ${m[1]} ${m[3]} ${m[4]} ${m[6]} ${m[7]})`;
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
reverseMatrixScaleTransformString = (m: any) => {
return `matrix(${1 / m[0]} 0 0 ${1 / m[4]} 0 0)`;
};
// This is passed to all children, should be called when an overlay's display state is toggled along with the overlay name and its new display state in boolean form
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
overlaySetShowing = (overlay: any, displaying: any) => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
this.setState((state: any) => {
return { ...state, display: { ...state.display, [overlay]: displaying } };
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'cameraTF' does not exist on type 'Readon... Remove this comment to see the full error message
client/src/components/graph/setupLasso.ts
+14
View File
@@ -1,18 +1,27 @@
import * as d3 from "d3";
import { Colors } from "@blueprintjs/core";
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
const Lasso = () => {
const dispatch = d3.dispatch("start", "end", "cancel");
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const lasso = (svg: any) => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let lassoPolygon: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let lassoPath: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let closePath: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let lassoInProgress: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const polygonToPath = (polygon: any) =>
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
`M${polygon.map((d: any) => d.join(",")).join("L")}`;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const distance = (pt1: any, pt2: any) =>
Math.sqrt((pt2[0] - pt1[0]) ** 2 + (pt2[1] - pt1[1]) ** 2);
@@ -21,6 +30,7 @@ const Lasso = () => {
const lassoPathColor = Colors.BLUE5;
const handleDragStart = () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
lassoPolygon = [(d3 as any).mouse(svg.node())]; // current x y of mouse within element
if (lassoPath) {
@@ -56,6 +66,7 @@ const Lasso = () => {
};
const handleDrag = () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const point = (d3 as any).mouse(svg.node());
lassoPolygon.push(point);
lassoPath.attr("d", polygonToPath(lassoPolygon));
@@ -126,6 +137,7 @@ const Lasso = () => {
area.call(drag);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(lasso as any).reset = () => {
if (lassoPath) {
lassoPath.remove();
@@ -138,6 +150,7 @@ const Lasso = () => {
}
};
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(lasso as any).move = (polygon: any) => {
if (polygon !== lassoPolygon || polygon.length !== lassoPolygon.length) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'reset' does not exist on type '(svg: any... Remove this comment to see the full error message
@@ -155,6 +168,7 @@ const Lasso = () => {
};
};
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
lasso.on = (type: any, callback: any) => {
dispatch.on(type, callback);
return lasso;
client/src/components/graph/setupSVGandBrush.ts
+8
View File
@@ -7,12 +7,19 @@ import Lasso from "./setupLasso";
*******************************************
******************************************/
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
export default (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
selectionToolType: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleStartAction: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleDragAction: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleEndAction: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleCancelAction: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
viewport: any
) => {
const svg = d3.select("#graph-wrapper").select("#lasso-layer");
@@ -39,6 +46,7 @@ export default (
}
if (selectionToolType === "lasso") {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const lasso = (Lasso() as any)
.on("end", handleEndAction)
// FYI, Lasso doesn't generate drag
client/src/components/infoDrawer/infoDrawer.tsx
+8
View File
@@ -8,14 +8,20 @@ import { selectableCategoryNames } from "../../util/stateManager/controlsHelpers
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => {
return {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
schema: (state as any).annoMatrix.schema,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
datasetTitle: (state as any).config?.displayNames?.dataset ?? "",
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
aboutURL: (state as any).config?.links?.["about-dataset"],
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
isOpen: (state as any).controls.datasetDrawer,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
dataPortalProps: (state as any).config?.corpora_props,
};
})
class InfoDrawer extends PureComponent {
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleClose = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
@@ -23,6 +29,7 @@ class InfoDrawer extends PureComponent {
dispatch({ type: "toggle dataset drawer" });
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'position' does not exist on type 'Readon... Remove this comment to see the full error message
@@ -43,6 +50,7 @@ class InfoDrawer extends PureComponent {
const allCategoryNames = selectableCategoryNames(schema).sort();
const singleValueCategories = new Map();
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
allCategoryNames.forEach((catName: any) => {
const isUserAnno = schema?.annotations?.obsByName[catName]?.writable;
const colSchema = schema.annotations.obsByName[catName];
client/src/components/infoDrawer/infoFormat.tsx
+13
View File
@@ -1,6 +1,7 @@
import { H3, H1, UL, HTMLTable, Classes } from "@blueprintjs/core";
import React from "react";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const renderContributors = (contributors: any, affiliations: any) => {
// eslint-disable-next-line no-constant-condition -- Temp removed contributor section to avoid publishing PII
if (!contributors || contributors.length === 0 || true) return null;
@@ -8,6 +9,7 @@ const renderContributors = (contributors: any, affiliations: any) => {
<>
<H3>Contributors</H3>
<p>
{/* eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS. */}
{contributors.map((contributor: any) => {
const { email, name, institution } = contributor;
@@ -27,6 +29,7 @@ const renderContributors = (contributors: any, affiliations: any) => {
// generates a list of unique institutions by order of appearance in contributors
const buildAffiliations = (contributors = []) => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const affiliations: any = [];
contributors.forEach((contributor) => {
const { institution } = contributor;
@@ -37,12 +40,14 @@ const buildAffiliations = (contributors = []) => {
return affiliations;
};
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const renderAffiliations = (affiliations: any) => {
if (affiliations.length === 0) return null;
return (
<>
<H3>Affiliations</H3>
<UL>
{/* eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS. */}
{affiliations.map((item: any, index: any) => (
<div key={item}>
<sup>{index + 1}</sup>
@@ -55,6 +60,7 @@ const renderAffiliations = (affiliations: any) => {
);
};
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const renderDOILink = (type: any, doi: any) => {
if (!doi) return null;
return (
@@ -72,7 +78,9 @@ const renderDOILink = (type: any, doi: any) => {
const ONTOLOGY_KEY = "ontology_term_id";
// Render list of metadata attributes found in categorical field
const renderDatasetMetadata = (
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
singleValueCategories: any,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
corporaMetadata: any
) => {
if (singleValueCategories.size === 0) return null;
@@ -110,15 +118,18 @@ const renderDatasetMetadata = (
// If this category is a ontology term, let's add its value to the previous node
if (String(category).includes(ONTOLOGY_KEY)) {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const prevElem = (elems as any).pop();
const newChildren = [...prevElem.props.children];
newChildren.splice(2, 1, [<td key="ontology">{value}</td>]);
// Props aren't extensible so we must clone and alter the component to append the new child
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(elems as any).push(
React.cloneElement(prevElem, prevElem.props, newChildren)
);
} else {
// Create the list item
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(elems as any).push(
<tr key={category}>
<td>{`${category}:`}</td>
@@ -137,6 +148,7 @@ const renderDatasetMetadata = (
// Renders any links found in the config where link_type is not "SUMMARY"
// If there are no links in the config, render the aboutURL
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const renderLinks = (projectLinks: any, aboutURL: any) => {
if (!projectLinks && !aboutURL) return null;
if (projectLinks)
@@ -144,6 +156,7 @@ const renderLinks = (projectLinks: any, aboutURL: any) => {
<>
<H3>Project Links</H3>
<UL>
{/* eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS. */}
{projectLinks.map((link: any) => {
if (link.link_type === "SUMMARY") return null;
return (
client/src/components/labelInput.tsx
+24 -6
View File
@@ -3,8 +3,10 @@ import { InputGroup, MenuItem, Keys } from "@blueprintjs/core";
import { Suggest } from "@blueprintjs/select";
import fuzzysort from "fuzzysort";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
export default class LabelInput extends React.PureComponent<{}, State> {
/*
Input widget for text labels, which acts like an InputGroup, but will also
@@ -28,6 +30,7 @@ export default class LabelInput extends React.PureComponent<{}, State> {
/* maxinum number of suggestions */
static QueryResultLimit = 100;
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
@@ -41,6 +44,7 @@ export default class LabelInput extends React.PureComponent<{}, State> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleQueryChange = (query: any, event: any) => {
// https://github.com/palantir/blueprint/issues/2983
if (!event) return;
@@ -56,6 +60,7 @@ export default class LabelInput extends React.PureComponent<{}, State> {
if (onChange) onChange(query, event);
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleItemSelect = (item: any, event: any) => {
/* only report the select if not already reported via onChange() */
const { target } = item;
@@ -65,6 +70,7 @@ export default class LabelInput extends React.PureComponent<{}, State> {
if (target !== query && onSelect) onSelect(target, event);
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleKeyDown = (e: any) => {
/*
prevent these events from propagating to containing form/dialog
@@ -80,14 +86,18 @@ export default class LabelInput extends React.PureComponent<{}, State> {
}
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleChange = (e: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'onChange' does not exist on type 'Readon... Remove this comment to see the full error message
const { onChange } = this.props;
if (onChange) onChange(e.target.value);
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
renderLabelSuggestion = (
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
queryResult: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
{ handleClick, modifiers }: any
) => {
if (queryResult.newLabel) {
@@ -116,6 +126,7 @@ export default class LabelInput extends React.PureComponent<{}, State> {
);
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
filterLabels(query: any) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'labelSuggestions' does not exist on type... Remove this comment to see the full error message
const { labelSuggestions } = this.props;
@@ -123,12 +134,15 @@ export default class LabelInput extends React.PureComponent<{}, State> {
/* empty query is wildcard */
if (query === "") {
return labelSuggestions
.slice(0, LabelInput.QueryResultLimit)
.map((l: any) => ({
target: l,
score: -10000,
}));
return (
labelSuggestions
.slice(0, LabelInput.QueryResultLimit)
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
.map((l: any) => ({
target: l,
score: -10000,
}))
);
}
/* else, do a fuzzy query */
@@ -145,6 +159,7 @@ export default class LabelInput extends React.PureComponent<{}, State> {
return queryResults;
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const { props } = this;
// @ts-expect-error ts-migrate(2339) FIXME: Property 'labelSuggestions' does not exist on type... Remove this comment to see the full error message
@@ -155,6 +170,7 @@ export default class LabelInput extends React.PureComponent<{}, State> {
return (
<InputGroup
autoFocus={autoFocus}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
{...(props as any).inputProps} // eslint-disable-line react/jsx-props-no-spreading --- Allows for modularity
value={label}
onChange={this.handleChange}
@@ -164,9 +180,11 @@ export default class LabelInput extends React.PureComponent<{}, State> {
const popoverProps = {
minimal: true,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
...(props as any).popoverProps,
};
const inputProps = {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
...(props as any).inputProps,
autoFocus: false,
};
client/src/components/leftSidebar/index.tsx
+3
View File
@@ -8,10 +8,13 @@ import Continuous from "../continuous/continuous";
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
scatterplotXXaccessor: (state as any).controls.scatterplotXXaccessor,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
scatterplotYYaccessor: (state as any).controls.scatterplotYYaccessor,
}))
class LeftSideBar extends React.Component {
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'scatterplotXXaccessor' does not exist on... Remove this comment to see the full error message
const { scatterplotXXaccessor, scatterplotYYaccessor } = this.props;
client/src/components/leftSidebar/topLeftLogoAndTitle.tsx
+8
View File
@@ -12,26 +12,34 @@ const DATASET_TITLE_FONT_SIZE = 14;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const { corpora_props: corporaProps } = (state as any).config;
const correctVersion =
["1.0.0", "1.1.0"].indexOf(corporaProps?.version?.corpora_schema_version) >
-1;
return {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
datasetTitle: (state as any).config?.displayNames?.dataset ?? "",
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
libraryVersions: (state as any).config?.library_versions,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
aboutLink: (state as any).config?.links?.["about-dataset"],
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
tosURL: (state as any).config?.parameters?.about_legal_tos,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
privacyURL: (state as any).config?.parameters?.about_legal_privacy,
title: correctVersion ? corporaProps?.title : undefined,
};
})
class LeftSideBar extends React.Component {
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleClick = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
dispatch({ type: "toggle dataset drawer" });
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'datasetTitle' does not exist on type 'Re... Remove this comment to see the full error message
client/src/components/menubar/authButtons.tsx
+2
View File
@@ -37,6 +37,7 @@ const Auth = React.memo((props) => {
const isAuthenticated = userInfo && userInfo.is_authenticated;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(window as any).userInfo = userInfo;
const randomInt = Math.random() * 15;
@@ -131,6 +132,7 @@ const Auth = React.memo((props) => {
}
});
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function PromptContent({ setIsPromptOpen }: any) {
const [isChecked, setIsChecked] = useState(false);
client/src/components/menubar/cellSetButtons.tsx
+3
View File
@@ -6,15 +6,18 @@ import actions from "../../actions";
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
differential: (state as any).differential,
}))
class CellSetButton extends React.PureComponent {
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
set() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, eitherCellSetOneOrTwo } = this.props;
dispatch(actions.setCellSetFromSelection(eitherCellSetOneOrTwo));
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'differential' does not exist on type 'Re... Remove this comment to see the full error message
const { differential, eitherCellSetOneOrTwo } = this.props;
client/src/components/menubar/clip.tsx
+2 -1
View File
@@ -45,7 +45,8 @@ const Clip = React.memo((props) => {
pendingClipPercentiles?.clipPercentileMax ?? clipPercentileMax;
const intent =
clipPercentileMin > 0 || clipPercentileMax < 100
? (Intent as any).INTENT_WARNING
? // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(Intent as any).INTENT_WARNING
: Intent.NONE;
return (
client/src/components/menubar/diffexpButtons.tsx
+5
View File
@@ -9,12 +9,16 @@ import CellSetButton from "./cellSetButtons";
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
differential: (state as any).differential,
diffexpMayBeSlow:
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(state as any).config?.parameters?.["diffexp-may-be-slow"] ?? false,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
diffexpCellcountMax: (state as any).config?.limits?.diffexp_cellcount_max,
}))
class DiffexpButtons extends React.PureComponent {
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
computeDiffExp = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, differential } = this.props;
@@ -28,6 +32,7 @@ class DiffexpButtons extends React.PureComponent {
}
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
/* diffexp-related buttons may be disabled */
// @ts-expect-error ts-migrate(2339) FIXME: Property 'differential' does not exist on type 'Re... Remove this comment to see the full error message
client/src/components/menubar/index.tsx
+31
View File
@@ -14,12 +14,14 @@ import UndoRedoReset from "./undoRedo";
import DiffexpButtons from "./diffexpButtons";
import { getEmbSubsetView } from "../../util/stateManager/viewStackHelpers";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Defa... Remove this comment to see the full error message
const { annoMatrix } = state;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
const crossfilter = (state as any).obsCrossfilter;
const selectedCount = crossfilter.countSelected();
@@ -33,32 +35,49 @@ type State = any;
return {
subsetPossible,
subsetResetPossible,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
graphInteractionMode: (state as any).controls.graphInteractionMode,
clipPercentileMin: Math.round(100 * (annoMatrix?.clipRange?.[0] ?? 0)),
clipPercentileMax: Math.round(100 * (annoMatrix?.clipRange?.[1] ?? 1)),
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
userDefinedGenes: (state as any).controls.userDefinedGenes,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
colorAccessor: (state as any).colors.colorAccessor,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
scatterplotXXaccessor: (state as any).controls.scatterplotXXaccessor,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
scatterplotYYaccessor: (state as any).controls.scatterplotYYaccessor,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
libraryVersions: (state as any).config?.library_versions,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
auth: (state as any).config?.authentication,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
userInfo: (state as any).userInfo,
// @ts-expect-error ts-migrate(7053) FIXME: Element implicitly has an 'any' type because expre... Remove this comment to see the full error message
undoDisabled: state["@@undoable/past"].length === 0,
// @ts-expect-error ts-migrate(7053) FIXME: Element implicitly has an 'any' type because expre... Remove this comment to see the full error message
redoDisabled: state["@@undoable/future"].length === 0,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
aboutLink: (state as any).config?.links?.["about-dataset"],
disableDiffexp:
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(state as any).config?.parameters?.["disable-diffexp"] ?? false,
diffexpMayBeSlow:
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
(state as any).config?.parameters?.["diffexp-may-be-slow"] ?? false,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
showCentroidLabels: (state as any).centroidLabels.showLabels,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
tosURL: (state as any).config?.parameters?.about_legal_tos,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
privacyURL: (state as any).config?.parameters?.about_legal_privacy,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
categoricalSelection: (state as any).categoricalSelection,
};
})
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class MenuBar extends React.PureComponent<{}, State> {
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
static isValidDigitKeyEvent(e: any) {
/*
Return true if this event is necessary to enter a percent number input.
@@ -83,6 +102,7 @@ class MenuBar extends React.PureComponent<{}, State> {
return key >= 0 && key <= 9;
}
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
this.state = {
@@ -90,6 +110,7 @@ class MenuBar extends React.PureComponent<{}, State> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
isClipDisabled = () => {
/*
return true if clip button should be disabled.
@@ -114,6 +135,7 @@ class MenuBar extends React.PureComponent<{}, State> {
return isDisabled;
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleClipOnKeyPress = (e: any) => {
/*
allow only numbers, plus other critical keys which
@@ -124,6 +146,7 @@ class MenuBar extends React.PureComponent<{}, State> {
}
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleClipPercentileMinValueChange = (v: any) => {
/*
Ignore anything that isn't a legit number
@@ -144,6 +167,7 @@ class MenuBar extends React.PureComponent<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
handleClipPercentileMaxValueChange = (v: any) => {
/*
Ignore anything that isn't a legit number
@@ -165,6 +189,7 @@ class MenuBar extends React.PureComponent<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleClipCommit = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
@@ -175,6 +200,7 @@ class MenuBar extends React.PureComponent<{}, State> {
dispatch(actions.clipAction(min, max));
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleClipOpening = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'clipPercentileMin' does not exist on typ... Remove this comment to see the full error message
const { clipPercentileMin, clipPercentileMax } = this.props;
@@ -183,10 +209,12 @@ class MenuBar extends React.PureComponent<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleClipClosing = () => {
this.setState({ pendingClipPercentiles: null });
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleCentroidChange = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch, showCentroidLabels } = this.props;
@@ -197,18 +225,21 @@ class MenuBar extends React.PureComponent<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleSubset = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
dispatch(actions.subsetAction());
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleSubsetReset = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
const { dispatch } = this.props;
dispatch(actions.resetSubsetAction());
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
client/src/components/miniHistogram/index.tsx
+6
View File
@@ -7,13 +7,16 @@ import {
} from "@blueprintjs/core";
export default class MiniHistogram extends React.PureComponent {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
canvasRef: any;
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
constructor(props: any) {
super(props);
this.canvasRef = React.createRef();
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
drawHistogram = () => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'xScale' does not exist on type 'Readonly... Remove this comment to see the full error message
const { xScale, yScale, bins, width, height } = this.props;
@@ -38,10 +41,12 @@ export default class MiniHistogram extends React.PureComponent {
}
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
componentDidMount = () => {
this.drawHistogram();
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
componentDidUpdate = (prevProps: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'obsOrVarContinuousFieldDisplayName' does... Remove this comment to see the full error message
const { obsOrVarContinuousFieldDisplayName, bins } = this.props;
@@ -53,6 +58,7 @@ export default class MiniHistogram extends React.PureComponent {
this.drawHistogram();
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'domainLabel' does not exist on type 'Rea... Remove this comment to see the full error message
client/src/components/miniStackedBar/index.tsx
+6
View File
@@ -1,13 +1,16 @@
import React from "react";
export default class MiniStackedBar extends React.PureComponent {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
canvasRef: any;
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
constructor(props: any) {
super(props);
this.canvasRef = React.createRef();
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
drawStacks = () => {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'domainValues' does not exist on type 'Re... Remove this comment to see the full error message
@@ -51,16 +54,19 @@ export default class MiniStackedBar extends React.PureComponent {
}
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
componentDidUpdate = (prevProps: any) => {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'occupancy' does not exist on type 'Reado... Remove this comment to see the full error message
const { occupancy } = this.props;
if (occupancy !== prevProps.occupancy) this.drawStacks();
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
componentDidMount = () => {
this.drawStacks();
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'width' does not exist on type 'Readonly<... Remove this comment to see the full error message
const { width, height } = this.props;
client/src/components/rightSidebar/index.tsx
+3
View File
@@ -5,10 +5,13 @@ import * as globals from "../../globals";
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@connect((state) => ({
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
scatterplotXXaccessor: (state as any).controls.scatterplotXXaccessor,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
scatterplotYYaccessor: (state as any).controls.scatterplotYYaccessor,
}))
class RightSidebar extends React.Component {
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
return (
<div
client/src/components/scatterplot/drawPointsRegl.ts
+1
View File
@@ -1,5 +1,6 @@
import { glPointFlags, glPointSize } from "../../util/glHelpers";
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
export default function drawPointsRegl(regl: any) {
return regl({
vert: `
client/src/components/scatterplot/scatterplot.tsx
+40
View File
@@ -23,6 +23,7 @@ import {
flagHighlight,
} from "../../util/glHelpers";
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function createProjectionTF(viewportWidth: any, viewportHeight: any) {
/*
the projection transform accounts for the screen size & other layout
@@ -31,6 +32,7 @@ function createProjectionTF(viewportWidth: any, viewportHeight: any) {
return mat3.projection(m, viewportWidth, viewportHeight);
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
function getScale(col: any, rangeMin: any, rangeMax: any) {
if (!col) return null;
const { min, max } = col.summarize();
@@ -39,6 +41,7 @@ function getScale(col: any, rangeMin: any, rangeMax: any) {
const getXScale = memoize(getScale);
const getYScale = memoize(getScale);
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
type State = any;
// @ts-expect-error ts-migrate(1238) FIXME: Unable to resolve signature of class decorator whe... Remove this comment to see the full error message
@@ -48,20 +51,27 @@ type State = any;
const {
scatterplotXXaccessor,
scatterplotYYaccessor,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
} = (state as any).controls;
return {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
annoMatrix: (state as any).annoMatrix,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
colors: (state as any).colors,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
pointDilation: (state as any).pointDilation,
// Accessors are var/gene names (strings)
scatterplotXXaccessor,
scatterplotYYaccessor,
crossfilter,
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
genesets: (state as any).genesets.genesets,
};
})
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
class Scatterplot extends React.PureComponent<{}, State> {
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
static createReglState(canvas: any) {
/*
Must be created for each canvas
@@ -92,14 +102,18 @@ class Scatterplot extends React.PureComponent<{}, State> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
static watchAsync(props: any, prevProps: any) {
return !shallowEqual(props.watchProps, prevProps.watchProps);
}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
axes: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
reglCanvas: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
renderCache: any;
computePointPositions = memoize((X, Y, xScale, yScale) => {
@@ -198,6 +212,7 @@ class Scatterplot extends React.PureComponent<{}, State> {
}
);
// eslint-disable-next-line @typescript-eslint/ban-types --- FIXME: disabled temporarily on migrate to TS.
constructor(props: {}) {
super(props);
const viewport = this.getViewportDimensions();
@@ -213,15 +228,18 @@ class Scatterplot extends React.PureComponent<{}, State> {
};
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
componentDidMount() {
// this affect point render size for the scatterplot
window.addEventListener("resize", this.handleResize);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
componentWillUnmount() {
window.removeEventListener("resize", this.handleResize);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
setReglCanvas = (canvas: any) => {
this.reglCanvas = canvas;
if (canvas) {
@@ -232,6 +250,7 @@ class Scatterplot extends React.PureComponent<{}, State> {
}
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
getViewportDimensions = () => {
return {
height: window.innerHeight,
@@ -239,6 +258,7 @@ class Scatterplot extends React.PureComponent<{}, State> {
};
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
handleResize = () => {
const { state } = this.state;
const viewport = this.getViewportDimensions();
@@ -248,6 +268,7 @@ class Scatterplot extends React.PureComponent<{}, State> {
});
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
fetchAsyncProps = async (props: any) => {
const {
scatterplotXXaccessor,
@@ -310,6 +331,7 @@ class Scatterplot extends React.PureComponent<{}, State> {
};
};
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
createXQuery(geneName: any) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Read... Remove this comment to see the full error message
const { annoMatrix } = this.props;
@@ -328,6 +350,7 @@ class Scatterplot extends React.PureComponent<{}, State> {
];
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
createColorByQuery(colors: any) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Read... Remove this comment to see the full error message
const { annoMatrix, genesets } = this.props;
@@ -336,6 +359,7 @@ class Scatterplot extends React.PureComponent<{}, State> {
return createColorQuery(colorMode, colorAccessor, schema, genesets);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
updateColorTable(colors: any, colorDf: any) {
/* update color table state */
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Read... Remove this comment to see the full error message
@@ -351,10 +375,15 @@ class Scatterplot extends React.PureComponent<{}, State> {
);
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
async fetchData(
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
scatterplotXXaccessor: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
scatterplotYYaccessor: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
colors: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
pointDilation: any
) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Read... Remove this comment to see the full error message
@@ -408,6 +437,7 @@ class Scatterplot extends React.PureComponent<{}, State> {
);
});
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
updateReglAndRender(newRenderCache: any) {
const { positions, colors, flags } = newRenderCache;
this.renderCache = newRenderCache;
@@ -418,12 +448,19 @@ class Scatterplot extends React.PureComponent<{}, State> {
this.renderCanvas();
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
renderPoints(
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
regl: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
drawPoints: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
flagBuffer: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
colorBuffer: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
pointBuffer: any,
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
projectionTF: any
) {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Read... Remove this comment to see the full error message
@@ -452,6 +489,7 @@ class Scatterplot extends React.PureComponent<{}, State> {
regl._gl.flush();
}
// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
render() {
const {
// @ts-expect-error ts-migrate(2339) FIXME: Property 'dispatch' does not exist on type 'Readon... Remove this comment to see the full error message
@@ -564,7 +602,9 @@ class Scatterplot extends React.PureComponent<{}, State> {
minimized={minimized}
scatterplotYYaccessor={scatterplotYYaccessor}
scatterplotXXaccessor={scatterplotXXaccessor}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
xScale={(asyncProps as any).xScale}
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
yScale={(asyncProps as any).yScale}
/>
);

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