Added @typescript-eslint/recommended config with suppressions (#2345)

* Disabled @blueprintjs/classes-constants. #2288.

* thuang-eslint-bp-off (#2344)

* Disabled @blueprintjs/classes-constants on webpack dev and shared. #2288.

* Added TS recommended, suppress lint errors codemod.

* Added per-error/warning ignore for tests.

* Added per-error/warning ignore for configuration.

* Added per-error/warning ignore for src. Removed suppress package.

* Minor linting.

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>

client/src/actions/annotation.ts

@@ -9,8 +9,11 @@ import { MatrixFBS, AnnotationsHelpers } from "../util/stateManager";
 const { isUserAnnotation } = AnnotationsHelpers;
 
 export const annotationCreateCategoryAction = (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   newCategoryName: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   categoryToDuplicate: any
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 ) => async (dispatch: any, getState: any) => {
   /*
   Add a new user-created category to the obs annotations.
@@ -89,8 +92,11 @@ export const annotationCreateCategoryAction = (
 };
 
 export const annotationRenameCategoryAction = (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   oldCategoryName: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   newCategoryName: any
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 ) => (dispatch: any, getState: any) => {
   /*
   Rename a user-created annotation category
@@ -124,8 +130,11 @@ export const annotationRenameCategoryAction = (
   });
 };
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export const annotationDeleteCategoryAction = (categoryName: any) => (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   dispatch: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   getState: any
 ) => {
   /*
@@ -149,9 +158,12 @@ export const annotationDeleteCategoryAction = (categoryName: any) => (
 };
 
 export const annotationCreateLabelInCategory = (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   categoryName: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   labelName: any,
-  assignSelected: any
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
+  assignSelected: any // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 ) => async (dispatch: any, getState: any) => {
   /*
   Add a new label to a user-defined category.  If assignSelected is true, assign
@@ -188,8 +200,10 @@ export const annotationCreateLabelInCategory = (
 };
 
 export const annotationDeleteLabelFromCategory = (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   categoryName: any,
-  labelName: any
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
+  labelName: any // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 ) => async (dispatch: any, getState: any) => {
   /*
   delete a label from a user-defined category
@@ -218,9 +232,13 @@ export const annotationDeleteLabelFromCategory = (
 };
 
 export const annotationRenameLabelInCategory = (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   categoryName: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   oldLabelName: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   newLabelName: any
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 ) => async (dispatch: any, getState: any) => {
   /*
   label name change
@@ -255,8 +273,11 @@ export const annotationRenameLabelInCategory = (
 };
 
 export const annotationLabelCurrentSelection = (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   categoryName: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   labelName: any
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 ) => async (dispatch: any, getState: any) => {
   /*
   set the label on all currently selected
@@ -284,14 +305,22 @@ export const annotationLabelCurrentSelection = (
   });
 };
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 function writableAnnotations(annoMatrix: any) {
-  return annoMatrix.schema.annotations.obs.columns
-    .filter((s: any) => s.writable)
-    .map((s: any) => s.name);
+  return (
+    annoMatrix.schema.annotations.obs.columns
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
+      .filter((s: any) => s.writable)
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
+      .map((s: any) => s.name)
+  );
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export const needToSaveObsAnnotations = (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   annoMatrix: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   lastSavedAnnoMatrix: any
 ) => {
   /*
@@ -317,12 +346,16 @@ export const needToSaveObsAnnotations = (
 
   // no schema changes; check for change in contents
   return currentWritable.some(
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     (col: any) => annoMatrix.col(col) !== lastSavedAnnoMatrix.col(col)
   );
 };
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export const saveObsAnnotationsAction = () => async (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   dispatch: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   getState: any
 ) => {
   /*
@@ -394,8 +427,11 @@ export const saveObsAnnotationsAction = () => async (
   }
 };
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export const saveGenesetsAction = () => async (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   dispatch: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   getState: any
 ) => {
   const state = getState();

client/src/actions/embedding.ts

@@ -5,9 +5,13 @@ action creators related to embeddings choice
 import { AnnoMatrixObsCrossfilter } from "../annoMatrix";
 import { _setEmbeddingSubset } from "../util/stateManager/viewStackHelpers";
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export async function _switchEmbedding(
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   prevAnnoMatrix: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   prevCrossfilter: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   newEmbeddingName: any
 ) {
   /*
@@ -25,8 +29,11 @@ export async function _switchEmbedding(
   return [annoMatrix, obsCrossfilter];
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export const layoutChoiceAction = (newLayoutChoice: any) => async (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   dispatch: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   getState: any
 ) => {
   /*

client/src/actions/geneset.ts

@@ -21,8 +21,11 @@ The behavior manifest in these action creators:
 Note that crossfilter indices are lazy created, as needed.
 */
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export const genesetDelete = (genesetName: any) => (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   dispatch: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   getState: any
 ) => {
   const state = getState();
@@ -43,8 +46,11 @@ export const genesetDelete = (genesetName: any) => (
   });
 };
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export const genesetAddGenes = (genesetName: any, genes: any) => async (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   dispatch: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   getState: any
 ) => {
   const state = getState();
@@ -53,6 +59,7 @@ export const genesetAddGenes = (genesetName: any, genes: any) => async (
   const varIndex = schema.annotations.var.index;
   const df = await annoMatrix.fetch("var", varIndex);
   const geneNames = df.col(varIndex).asArray();
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   genes = genes.reduce((acc: any, gene: any) => {
     if (geneNames.indexOf(gene.geneSymbol) === -1) {
       postUserErrorToast(
@@ -81,8 +88,11 @@ export const genesetAddGenes = (genesetName: any, genes: any) => async (
   });
 };
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export const genesetDeleteGenes = (genesetName: any, geneSymbols: any) => (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   dispatch: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   getState: any
 ) => {
   const state = getState();
@@ -101,8 +111,11 @@ Private
 */
 
 function dropGenesetSummaryDimension(
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   obsCrossfilter: any,
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   state: any,
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   genesetName: any
 ) {
   const { annoMatrix, genesets } = state;
@@ -120,6 +133,7 @@ function dropGenesetSummaryDimension(
   return obsCrossfilter.dropDimension("X", query);
 }
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 function dropGeneDimension(obsCrossfilter: any, state: any, gene: any) {
   const { annoMatrix } = state;
   const varIndex = annoMatrix.schema.annotations?.var?.index;
@@ -134,13 +148,18 @@ function dropGeneDimension(obsCrossfilter: any, state: any, gene: any) {
 }
 
 function dropGeneset(
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   dispatch: any,
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   state: any,
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   genesetName: any,
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   geneSymbols: any
 ) {
   const { obsCrossfilter: prevObsCrossfilter } = state;
   const obsCrossfilter = geneSymbols.reduce(
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     (crossfilter: any, gene: any) =>
       dropGeneDimension(crossfilter, state, gene),
     dropGenesetSummaryDimension(prevObsCrossfilter, state, genesetName)
@@ -150,6 +169,7 @@ function dropGeneset(
     continuousNamespace: { isGeneSetSummary: true },
     selection: genesetName,
   });
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   geneSymbols.forEach((g: any) =>
     dispatch({
       type: "continuous metadata histogram cancel",

client/src/actions/index.ts

@@ -15,6 +15,7 @@ import * as genesetActions from "./geneset";
 /*
 return promise fetching user-configured colors
 */
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 async function userColorsFetchAndLoad(dispatch: any) {
   return fetchJson("colors").then((response) =>
     dispatch({
@@ -28,6 +29,7 @@ async function schemaFetch() {
   return fetchJson("schema");
 }
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 async function configFetch(dispatch: any) {
   return fetchJson("config").then((response) => {
     const config = { ...globals.configDefaults, ...response.config };
@@ -39,6 +41,7 @@ async function configFetch(dispatch: any) {
   });
 }
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 async function userInfoFetch(dispatch: any) {
   return fetchJson("userinfo").then((response) => {
     const { userinfo: userInfo } = response || {};
@@ -50,6 +53,7 @@ async function userInfoFetch(dispatch: any) {
   });
 }
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 async function genesetsFetch(dispatch: any, config: any) {
   /* request genesets ONLY if the backend supports the feature */
   const defaultResponse = {
@@ -71,19 +75,24 @@ async function genesetsFetch(dispatch: any, config: any) {
   }
 }
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 function prefetchEmbeddings(annoMatrix: any) {
   /*
   prefetch requests for all embeddings
   */
   const { schema } = annoMatrix;
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   const available = schema.layout.obs.map((v: any) => v.name);
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   available.forEach((embName: any) => annoMatrix.prefetch("emb", embName));
 }
 
 /*
 Application bootstrap
 */
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 const doInitialDataLoad = () =>
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   catchErrorsWrap(async (dispatch: any) => {
     dispatch({ type: "initial data load start" });
 
@@ -114,6 +123,7 @@ const doInitialDataLoad = () =>
       const layoutSchema = schema?.schema?.layout?.obs ?? [];
       if (
         defaultEmbedding &&
+        // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
         layoutSchema.some((s: any) => s.name === defaultEmbedding)
       ) {
         dispatch(embActions.layoutChoiceAction(defaultEmbedding));
@@ -123,6 +133,7 @@ const doInitialDataLoad = () =>
     }
   }, true);
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 function requestSingleGeneExpressionCountsForColoringPOST(gene: any) {
   return {
     type: "color by expression",
@@ -130,6 +141,7 @@ function requestSingleGeneExpressionCountsForColoringPOST(gene: any) {
   };
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 const requestUserDefinedGene = (gene: any) => ({
   type: "request user defined gene success",
 
@@ -138,6 +150,7 @@ const requestUserDefinedGene = (gene: any) => ({
   },
 });
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 const dispatchDiffExpErrors = (dispatch: any, response: any) => {
   switch (response.status) {
     case 403:
@@ -162,9 +175,12 @@ const dispatchDiffExpErrors = (dispatch: any, response: any) => {
 };
 
 const requestDifferentialExpression = (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   set1: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   set2: any,
   num_genes = 50
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 ) => async (dispatch: any, getState: any) => {
   dispatch({ type: "request differential expression started" });
   try {
@@ -214,6 +230,7 @@ const requestDifferentialExpression = (
     const diffexpLists = { negative: [], positive: [] };
     for (const polarity of Object.keys(diffexpLists)) {
       // @ts-expect-error ts-migrate(7053) FIXME: Element implicitly has an 'any' type because expre... Remove this comment to see the full error message
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
       diffexpLists[polarity] = response[polarity].map((v: any) => [
         varIndex.at(v[0], varIndexName),
         ...v.slice(1),
@@ -233,6 +250,7 @@ const requestDifferentialExpression = (
   }
 };
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 function fetchJson(pathAndQuery: any) {
   return doJsonRequest(
     `${globals.API.prefix}${globals.API.version}${pathAndQuery}`

client/src/actions/selection.ts

@@ -2,10 +2,13 @@
 Action creators for selection 
 */
 export const selectContinuousMetadataAction = (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   type: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   query: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   range: any,
-  oldProps = {}
+  oldProps = {} // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 ) => async (dispatch: any, getState: any) => {
   const { obsCrossfilter: prevObsCrossfilter } = getState();
 
@@ -29,12 +32,21 @@ export const selectContinuousMetadataAction = (
 };
 
 export const selectCategoricalMetadataAction = (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   type: any, // action type
-  metadataField: any, // annotation category name
+  // annotation category name
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
+  metadataField: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   labels: any,
-  label: any, // the label being selected/deselected
-  isSelected: any, // bool
+  // the label being selected/deselected
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
+  label: any,
+  // bool
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
+  isSelected: any,
   oldProps = {}
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 ) => async (dispatch: any, getState: any) => {
   const {
     obsCrossfilter: prevObsCrossfilter,
@@ -43,6 +55,7 @@ export const selectCategoricalMetadataAction = (
 
   const labelSelectionState = new Map(categoricalSelection[metadataField]);
   labels.forEach(
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     (l: any) => labelSelectionState.has(l) || labelSelectionState.set(l, true)
   );
   labelSelectionState.set(label, isSelected);
@@ -70,11 +83,18 @@ export const selectCategoricalMetadataAction = (
 };
 
 export const selectCategoricalAllMetadataAction = (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   type: any, // action type
-  metadataField: any, // annotation category name
+  // annotation category name
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
+  metadataField: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   labels: any,
-  isSelected: any, // bool, select all or none
+  // bool, select all or none
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
+  isSelected: any,
   oldProps = {}
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 ) => async (dispatch: any, getState: any) => {
   const {
     obsCrossfilter: prevObsCrossfilter,
@@ -82,6 +102,7 @@ export const selectCategoricalAllMetadataAction = (
   } = getState();
 
   const labelSelectionState = new Map(categoricalSelection[metadataField]);
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   labels.forEach((label: any) => labelSelectionState.set(label, isSelected));
 
   const selection = { mode: isSelected ? "all" : "none" };
@@ -104,14 +125,19 @@ export const selectCategoricalAllMetadataAction = (
  ** Graph selection-related actions
  **/
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export const graphBrushStartAction = () =>
   /* no change to crossfilter until a change fires */
   ({ type: "graph brush start" });
 
 const _graphBrushWithinRectAction = (
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   type: any,
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   embName: any,
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   brushCoords: any
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 ) => async (dispatch: any, getState: any) => {
   const { obsCrossfilter: prevObsCrossfilter } = getState();
 
@@ -129,8 +155,11 @@ const _graphBrushWithinRectAction = (
   });
 };
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 const _graphAllAction = (type: any, embName: any) => async (
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   dispatch: any,
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   getState: any
 ) => {
   const { obsCrossfilter: prevObsCrossfilter } = getState();
@@ -145,29 +174,39 @@ const _graphAllAction = (type: any, embName: any) => async (
   });
 };
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export const graphBrushChangeAction = (embName: any, brushCoords: any) =>
   _graphBrushWithinRectAction("graph brush change", embName, brushCoords);
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export const graphBrushEndAction = (embName: any, brushCoords: any) =>
   _graphBrushWithinRectAction("graph brush end", embName, brushCoords);
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export const graphBrushCancelAction = (embName: any) =>
   _graphAllAction("graph brush cancel", embName);
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export const graphBrushDeselectAction = (embName: any) =>
   _graphAllAction("graph brush deselect", embName);
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export const graphLassoStartAction = () =>
   /* no change to crossfilter until a change fires */
   ({ type: "graph lasso start" });
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export const graphLassoCancelAction = (embName: any) =>
   _graphAllAction("graph lasso cancel", embName);
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export const graphLassoDeselectAction = (embName: any) =>
   _graphAllAction("graph lasso cancel", embName);
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export const graphLassoEndAction = (embName: any, polygon: any) => async (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   dispatch: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   getState: any
 ) => {
   const { obsCrossfilter: prevObsCrossfilter } = getState();
@@ -192,8 +231,11 @@ export const graphLassoEndAction = (embName: any, polygon: any) => async (
 /*
 Differential expression set selection
 */
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export const setCellSetFromSelection = (cellSetId: any) => (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   dispatch: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   getState: any
 ) => {
   const { obsCrossfilter } = getState();

client/src/actions/viewStack.ts

@@ -18,8 +18,11 @@ import {
   _userResetSubsetAnnoMatrix,
 } from "../util/stateManager/viewStackHelpers";
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export const clipAction = (min: any, max: any) => (
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   dispatch: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   getState: any
 ) => {
   /*
@@ -37,6 +40,7 @@ export const clipAction = (min: any, max: any) => (
   });
 };
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export const subsetAction = () => (dispatch: any, getState: any) => {
   /*
   Subset the annoMatrix to the current crossfilter selection by pushing a 
@@ -61,6 +65,7 @@ export const subsetAction = () => (dispatch: any, getState: any) => {
   });
 };
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export const resetSubsetAction = () => (dispatch: any, getState: any) => {
   /*
   Reset the annoMatrix to all data.  Because we may have multiple views