Added @typescript-eslint/recommended config with suppressions (#2345)

* Disabled @blueprintjs/classes-constants. #2288.

* thuang-eslint-bp-off (#2344)

* Disabled @blueprintjs/classes-constants on webpack dev and shared. #2288.

* Added TS recommended, suppress lint errors codemod.

* Added per-error/warning ignore for tests.

* Added per-error/warning ignore for configuration.

* Added per-error/warning ignore for src. Removed suppress package.

* Minor linting.

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>

client/src/annoMatrix/annoMatrix.ts

@@ -17,26 +17,37 @@ import { _queryValidate, _queryCacheKey } from "./query";
 const _dataframeCache = dataframeMemo(128);
 
 export default class AnnoMatrix {
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   public isView: any;
 
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   public nObs: any;
 
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   public nVar: any;
 
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   public rowIndex: any;
 
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   public schema: any;
 
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   public userFlags: any;
 
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   public viewOf: any;
 
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   protected _cache: any;
 
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   private _pendingLoad: any;
 
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   private _whereCache: any;
 
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   private _gcInfo: any;
 
   /*
@@ -69,6 +80,7 @@ export default class AnnoMatrix {
       subset(annoMatrix, rowLabels) -> annoMatrix
   etc.
   */
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   static fields() {
     /*
     return the fields present in the AnnoMatrix instance.
@@ -76,6 +88,7 @@ export default class AnnoMatrix {
     return ["obs", "var", "emb", "X"];
   }
 
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   constructor(schema: any, nObs: any, nVar: any, rowIndex = null) {
     /*
     Private constructor - this is an abstract base class.  Do not use.
@@ -132,6 +145,7 @@ export default class AnnoMatrix {
    ** Schema helper/accessors
    **/
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   getMatrixColumns(field) {
     /*
     Return array of column names in the field.  ONLY supported on the
@@ -144,7 +158,7 @@ export default class AnnoMatrix {
     return _schemaColumns(this.schema, field);
   }
 
-  // eslint-disable-next-line class-methods-use-this -- need to be able to call this on instances
+  // eslint-disable-next-line class-methods-use-this, @typescript-eslint/explicit-module-boundary-types -- need to be able to call this on instances
   getMatrixFields() {
     /*
     Return array of fields in this annoMatrix.  Currently hard-wired to
@@ -156,6 +170,7 @@ export default class AnnoMatrix {
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   getColumnSchema(field, col) {
     /*
     Return the schema for the field & column ,eg,
@@ -169,6 +184,7 @@ export default class AnnoMatrix {
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   getColumnDimensions(field, col) {
     /*
     Return the dimensions on this field / column.  For most fields, which are 1D,
@@ -187,10 +203,12 @@ export default class AnnoMatrix {
   /**
    ** General utility methods
    **/
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   base() {
     /*
     return the base of view, or `this` if not a view.
     */
+    // eslint-disable-next-line @typescript-eslint/no-this-alias --- FIXME: disabled temporarily on migrate to TS.
     let annoMatrix = this;
     while (annoMatrix.isView) annoMatrix = annoMatrix.viewOf;
     return annoMatrix;
@@ -200,6 +218,7 @@ export default class AnnoMatrix {
    ** Load / read interfaces
    **/
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   fetch(field, q) {
     /*
 		Return the given query on a single matrix field as a single dataframe.
@@ -258,6 +277,7 @@ export default class AnnoMatrix {
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   prefetch(field, q) {
     /*
 		Start a data fetch & cache fill.  Identical to fetch() except it does
@@ -289,7 +309,7 @@ export default class AnnoMatrix {
    **/
 
   // @ts-expect-error ts-migrate(6133) FIXME: 'col' is declared but its value is never read.
-  // eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars -- make sure subclass implements
+  // eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars, @typescript-eslint/explicit-module-boundary-types -- make sure subclass implements
   addObsAnnoCategory(col, category) {
     /*
     Add a new category value (aka "label") to a writable obs column, and return the new AnnoMatrix.
@@ -307,7 +327,7 @@ export default class AnnoMatrix {
   }
 
   // @ts-expect-error ts-migrate(6133) FIXME: 'col' is declared but its value is never read.
-  // eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars -- make sure subclass implements
+  // eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars, @typescript-eslint/explicit-module-boundary-types -- make sure subclass implements
   async removeObsAnnoCategory(col, category, unassignedCategory) {
     /*
     Remove a category value from an obs column, reassign any obs having that value
@@ -329,7 +349,7 @@ export default class AnnoMatrix {
   }
 
   // @ts-expect-error ts-migrate(6133) FIXME: 'col' is declared but its value is never read.
-  // eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars -- make sure subclass implements
+  // eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars, @typescript-eslint/explicit-module-boundary-types -- make sure subclass implements
   dropObsColumn(col) {
     /*
     Drop an entire writable column, eg a user-created obs annotation.  Typical use
@@ -346,7 +366,7 @@ export default class AnnoMatrix {
   }
 
   // @ts-expect-error ts-migrate(6133) FIXME: 'colSchema' is declared but its value is never rea... Remove this comment to see the full error message
-  // eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars -- make sure subclass implements
+  // eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars, @typescript-eslint/explicit-module-boundary-types -- make sure subclass implements
   addObsColumn(colSchema, Ctor, value) {
     /*
     Add a new writable OBS annotation column, with the caller-specified schema, initial value
@@ -376,7 +396,7 @@ export default class AnnoMatrix {
   }
 
   // @ts-expect-error ts-migrate(6133) FIXME: 'oldCol' is declared but its value is never read.
-  // eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars -- make sure subclass implements
+  // eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars, @typescript-eslint/explicit-module-boundary-types -- make sure subclass implements
   renameObsColumn(oldCol, newCol) {
     /*
     Rename the obs column 'oldCol' to have name 'newCol' and returns new AnnoMatrix.
@@ -392,7 +412,7 @@ export default class AnnoMatrix {
   }
 
   // @ts-expect-error ts-migrate(6133) FIXME: 'col' is declared but its value is never read.
-  // eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars -- make sure subclass implements
+  // eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars, @typescript-eslint/explicit-module-boundary-types -- make sure subclass implements
   async setObsColumnValues(col, obsLabels, value) {
     /*
     Set all obs with label in array 'obsLabels' to have 'value'.  Typical use would be
@@ -411,7 +431,7 @@ export default class AnnoMatrix {
   }
 
   // @ts-expect-error ts-migrate(6133) FIXME: 'col' is declared but its value is never read.
-  // eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars -- make sure subclass implements
+  // eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars, @typescript-eslint/explicit-module-boundary-types -- make sure subclass implements
   async resetObsColumnValues(col, oldValue, newValue) {
     /*
     Set by value - all elements in the column with value 'oldValue' are set to 'newValue'.
@@ -429,7 +449,7 @@ export default class AnnoMatrix {
   }
 
   // @ts-expect-error ts-migrate(6133) FIXME: 'colSchema' is declared but its value is never rea... Remove this comment to see the full error message
-  // eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars -- make sure subclass implements
+  // eslint-disable-next-line class-methods-use-this, @typescript-eslint/no-unused-vars, @typescript-eslint/explicit-module-boundary-types -- make sure subclass implements
   addEmbedding(colSchema) {
     /*
     Add a new obs embedding to the AnnoMatrix, with provided schema.
@@ -443,6 +463,7 @@ export default class AnnoMatrix {
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   getCacheKeys(field, query) {
     /*
 Return cache keys for columns associated with this query.  May return
@@ -455,6 +476,7 @@ Return cache keys for columns associated with this query.  May return
    ** Private interfaces below.
    **/
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   _resolveCachedQueries(field, queries) {
     return (
       queries
@@ -471,6 +493,7 @@ Return cache keys for columns associated with this query.  May return
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   async _fetch(field, q) {
     if (!AnnoMatrix.fields().includes(field)) return undefined;
     const queries = Array.isArray(q) ? q : [q];
@@ -518,6 +541,7 @@ Return cache keys for columns associated with this query.  May return
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   async _getPendingLoad(field, query, fetchFn) {
     /*
     Given a query on a field, ensure that we only have a single outstanding
@@ -539,7 +563,7 @@ Return cache keys for columns associated with this query.  May return
     return this._pendingLoad[field][key];
   }
 
-  // eslint-disable-next-line class-methods-use-this -- make sure subclass implements
+  // eslint-disable-next-line class-methods-use-this, @typescript-eslint/explicit-module-boundary-types -- make sure subclass implements
   async _doLoad() {
     _subclassResponsibility();
   }
@@ -574,6 +598,7 @@ Return cache keys for columns associated with this query.  May return
   as much of the cache is pinned by that data structure.
   */
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   _gcField(field, isHot, pinnedColumns) {
     const maxColumns = isHot ? 256 : 10;
     const cache = this._cache[field];
@@ -616,6 +641,7 @@ Return cache keys for columns associated with this query.  May return
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   _gcFetchCleanup(field, pinnedColumns) {
     /*
     Called during data load/fetch.  By definition, this is 'hot', so we
@@ -631,6 +657,7 @@ Return cache keys for columns associated with this query.  May return
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'hints' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   _gc(hints) {
     /*
     Called from middleware, or elsewhere.  isHot is true if we are in the active store, 
@@ -644,6 +671,7 @@ Return cache keys for columns associated with this query.  May return
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   _gcUpdateStats(field, dataframe) {
     /*
     called each time a query is performed, allowing the gc to update any bookkeeping
@@ -672,6 +700,7 @@ Return cache keys for columns associated with this query.  May return
   Do not override _clone();
   **/
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'clone' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   _cloneDeeper(clone) {
     clone._cache = _shallowClone(this._cache);
     clone._gcInfo = new Map();
@@ -684,6 +713,7 @@ Return cache keys for columns associated with this query.  May return
     return clone;
   }
 
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   _clone() {
     const clone = _shallowClone(this);
     this._cloneDeeper(clone);

client/src/annoMatrix/clone.ts

@@ -1,6 +1,7 @@
 /*
 Shallow clone an object, correctly handling prototype
 */
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export default function _shallowClone(orig: any) {
   return Object.assign(Object.create(Object.getPrototypeOf(orig)), orig);
 }

client/src/annoMatrix/crossfilter.ts

@@ -24,16 +24,22 @@ function _dimensionName(field, colNames) {
 
 export default class AnnoMatrixObsCrossfilter {
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'annoMatrix' implicitly has an 'any' typ... Remove this comment to see the full error message
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   constructor(annoMatrix, _obsCrossfilter = null) {
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     (this as any).annoMatrix = annoMatrix;
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     (this as any).obsCrossfilter =
       _obsCrossfilter || new Crossfilter(annoMatrix._cache.obs);
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     (this as any).obsCrossfilter = (this as any).obsCrossfilter.setData(
       annoMatrix._cache.obs
     );
   }
 
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   size() {
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     return (this as any).obsCrossfilter.size();
   }
 
@@ -45,12 +51,15 @@ export default class AnnoMatrixObsCrossfilter {
   See API documentation in annoMatrix.js.
   **/
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'colSchema' implicitly has an 'any' type... Remove this comment to see the full error message
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   addObsColumn(colSchema, Ctor, value) {
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     const annoMatrix = (this as any).annoMatrix.addObsColumn(
       colSchema,
       Ctor,
       value
     );
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     const obsCrossfilter = (this as any).obsCrossfilter.setData(
       annoMatrix._cache.obs
     );
@@ -58,7 +67,9 @@ export default class AnnoMatrixObsCrossfilter {
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'col' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   dropObsColumn(col) {
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     const annoMatrix = (this as any).annoMatrix.dropObsColumn(col);
     // @ts-expect-error ts-migrate(2339) FIXME: Property 'obsCrossfilter' does not exist on type '... Remove this comment to see the full error message
     let { obsCrossfilter } = this;
@@ -70,7 +81,9 @@ export default class AnnoMatrixObsCrossfilter {
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'oldCol' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   renameObsColumn(oldCol, newCol) {
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     const annoMatrix = (this as any).annoMatrix.renameObsColumn(oldCol, newCol);
     const oldDimName = _dimensionName("obs", oldCol);
     const newDimName = _dimensionName("obs", newCol);
@@ -83,7 +96,9 @@ export default class AnnoMatrixObsCrossfilter {
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'col' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   addObsAnnoCategory(col, category) {
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     const annoMatrix = (this as any).annoMatrix.addObsAnnoCategory(
       col,
       category
@@ -98,7 +113,9 @@ export default class AnnoMatrixObsCrossfilter {
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'col' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   async removeObsAnnoCategory(col, category, unassignedCategory) {
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     const annoMatrix = await (this as any).annoMatrix.removeObsAnnoCategory(
       col,
       category,
@@ -114,7 +131,9 @@ export default class AnnoMatrixObsCrossfilter {
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'col' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   async setObsColumnValues(col, rowLabels, value) {
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     const annoMatrix = await (this as any).annoMatrix.setObsColumnValues(
       col,
       rowLabels,
@@ -130,7 +149,9 @@ export default class AnnoMatrixObsCrossfilter {
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'col' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   async resetObsColumnValues(col, oldValue, newValue) {
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     const annoMatrix = await (this as any).annoMatrix.resetObsColumnValues(
       col,
       oldValue,
@@ -146,10 +167,13 @@ export default class AnnoMatrixObsCrossfilter {
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'colSchema' implicitly has an 'any' type... Remove this comment to see the full error message
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   addEmbedding(colSchema) {
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     const annoMatrix = (this as any).annoMatrix.addEmbedding(colSchema);
     return new AnnoMatrixObsCrossfilter(
       annoMatrix,
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
       (this as any).obsCrossfilter
     );
   }
@@ -160,6 +184,7 @@ export default class AnnoMatrixObsCrossfilter {
    * annomatrix cache.
    */
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   dropDimension(field, query) {
     // @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Anno... Remove this comment to see the full error message
     const { annoMatrix } = this;
@@ -182,6 +207,7 @@ export default class AnnoMatrixObsCrossfilter {
   **/
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   async select(field, query, spec) {
     // @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Anno... Remove this comment to see the full error message
     const { annoMatrix } = this;
@@ -214,62 +240,83 @@ export default class AnnoMatrixObsCrossfilter {
     return new AnnoMatrixObsCrossfilter(annoMatrix, obsCrossfilter);
   }
 
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   selectAll() {
     /*
 		Select all on any dimension in this field.
 		*/
     // @ts-expect-error ts-migrate(2339) FIXME: Property 'annoMatrix' does not exist on type 'Anno... Remove this comment to see the full error message
     const { annoMatrix } = this;
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     const currentDims = (this as any).obsCrossfilter.dimensionNames();
     // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'xfltr' implicitly has an 'any' type.
     const obsCrossfilter = currentDims.reduce((xfltr, dim) => {
       return xfltr.select(dim, { mode: "all" });
-    }, (this as any).obsCrossfilter);
+    }, (this as any).obsCrossfilter); // eslint-disable-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     return new AnnoMatrixObsCrossfilter(annoMatrix, obsCrossfilter);
   }
 
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   countSelected() {
     /* if no data yet indexed in the crossfilter, just say everything is selected */
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     if ((this as any).obsCrossfilter.size() === 0)
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
       return (this as any).annoMatrix.nObs;
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     return (this as any).obsCrossfilter.countSelected();
   }
 
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   allSelectedMask() {
     /* if no data yet indexed in the crossfilter, just say everything is selected */
     if (
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
       (this as any).obsCrossfilter.size() === 0 ||
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
       (this as any).obsCrossfilter.dimensionNames().length === 0
     ) {
       /* fake the mask */
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
       return new Uint8Array((this as any).annoMatrix.nObs).fill(1);
     }
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     return (this as any).obsCrossfilter.allSelectedMask();
   }
 
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   allSelectedLabels() {
     /* if no data yet indexed in the crossfilter, just say everything is selected */
     if (
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
       (this as any).obsCrossfilter.size() === 0 ||
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
       (this as any).obsCrossfilter.dimensionNames().length === 0
     ) {
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
       return (this as any).annoMatrix.rowIndex.labels();
     }
 
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     const mask = (this as any).obsCrossfilter.allSelectedMask();
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     const index = (this as any).annoMatrix.rowIndex.isubsetMask(mask);
     return index.labels();
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'array' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   fillByIsSelected(array, selectedValue, deselectedValue) {
     /* if no data yet indexed in the crossfilter, just say everything is selected */
     if (
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
       (this as any).obsCrossfilter.size() === 0 ||
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
       (this as any).obsCrossfilter.dimensionNames().length === 0
     ) {
       return array.fill(selectedValue);
     }
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     return (this as any).obsCrossfilter.fillByIsSelected(
       array,
       selectedValue,
@@ -282,6 +329,7 @@ export default class AnnoMatrixObsCrossfilter {
    **/
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'annoMatrix' implicitly has an 'any' typ... Remove this comment to see the full error message
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   _addObsCrossfilterDimension(annoMatrix, obsCrossfilter, field, df) {
     if (field === "var") return obsCrossfilter;
     const dimName = _dimensionNameFromDf(field, df);
@@ -293,9 +341,11 @@ export default class AnnoMatrixObsCrossfilter {
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   _getColumnBaseType(field, col) {
     /* Look up the primitive type for this field/col */
     const colSchema = _getColumnSchema(
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
       (this as any).annoMatrix.schema,
       field,
       col
@@ -304,6 +354,7 @@ export default class AnnoMatrixObsCrossfilter {
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   _getObsDimensionParams(field, df) {
     /* return the crossfilter dimensiontype type and params for this field/dataframe */
 

client/src/annoMatrix/fetchHelpers.ts

@@ -1,18 +1,22 @@
 export { doBinaryRequest, doFetch } from "../util/actionHelpers";
 
 /* double URI encode - needed for query-param filters */
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function _dubEncURIComp(s: any) {
   return encodeURIComponent(encodeURIComponent(s));
 }
 
 /* currently unused, consider deleting */
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function _fetchResult(promise: any) {
   let _status = "pending";
   const res = promise.then(
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     (r: any) => {
       _status = "success";
       return r;
     },
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     (e: any) => {
       _status = "error";
       throw e;

client/src/annoMatrix/loader.ts

@@ -23,6 +23,7 @@ import {
 const promiseThrottle = new PromiseLimit(5);
 
 export default class AnnoMatrixLoader extends AnnoMatrix {
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   baseURL: any;
 
   /*
@@ -35,6 +36,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
     new AnnoMatrixLoader(serverBaseURL, schema) -> instance
 
   */
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   constructor(baseURL: any, schema: any) {
     const { nObs, nVar } = schema.dataframe;
     super(schema, nObs, nVar);
@@ -50,6 +52,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
   /**
    ** Public.  API described in base class.
    **/
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   addObsAnnoCategory(col: any, category: any) {
     /*
     Add a new category (aka label) to the schema for an obs column.
@@ -62,9 +65,13 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
     return newAnnoMatrix;
   }
 
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   async removeObsAnnoCategory(
+    // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
     col: any,
+    // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
     category: any,
+    // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
     unassignedCategory: any
   ) {
     /*
@@ -86,6 +93,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
     return newAnnoMatrix;
   }
 
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   dropObsColumn(col: any) {
     /*
 		drop column from field
@@ -94,12 +102,14 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
     _writableCheck(colSchema); // throws on error
 
     const newAnnoMatrix = this._clone();
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     newAnnoMatrix._cache.obs = (this as any)._cache.obs.dropCol(col);
     newAnnoMatrix.schema = removeObsAnnoColumn(this.schema, col);
     return newAnnoMatrix;
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'colSchema' implicitly has an 'any' type... Remove this comment to see the full error message
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   addObsColumn(colSchema, Ctor, value) {
     /*
 		add a column to field, initializing with value.  Value may 
@@ -112,6 +122,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
     const colName = colSchema.name;
     if (
       _getColumnSchema(this.schema, "obs", colName) ||
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
       (this as any)._cache.obs.hasCol(colName)
     ) {
       throw new Error("column already exists");
@@ -128,6 +139,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
     } else {
       data = new Ctor(this.nObs).fill(value);
     }
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     newAnnoMatrix._cache.obs = (this as any)._cache.obs.withCol(colName, data);
     _normalizeCategoricalSchema(
       colSchema,
@@ -138,14 +150,17 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'oldCol' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   renameObsColumn(oldCol, newCol) {
     /*
     Rename the obs oldColName to newColName.  oldCol must be writable.
     */
     const oldColSchema = _getColumnSchema(this.schema, "obs", oldCol);
     _writableCheck(oldColSchema);
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     const value = (this as any)._cache.obs.hasCol(oldCol)
-      ? (this as any)._cache.obs.col(oldCol).asArray()
+      ? // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
+        (this as any)._cache.obs.col(oldCol).asArray()
       : undefined;
     return this.dropObsColumn(oldCol).addObsColumn(
       {
@@ -158,6 +173,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'col' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   async setObsColumnValues(col, rowLabels, value) {
     /*
 		Set all rows identified by rowLabels to value.
@@ -167,10 +183,12 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
 
     // ensure that we have the data in cache before we manipulate it
     await this.fetch("obs", col);
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     if (!(this as any)._cache.obs.hasCol(col))
       throw new Error("Internal error - user annotation data missing");
 
     const rowIndices = this.rowIndex.getOffsets(rowLabels);
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     const data = (this as any)._cache.obs.col(col).asArray().slice();
     for (let i = 0, len = rowIndices.length; i < len; i += 1) {
       const idx = rowIndices[i];
@@ -179,6 +197,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
     }
 
     const newAnnoMatrix = this._clone();
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     newAnnoMatrix._cache.obs = (this as any)._cache.obs.replaceColData(
       col,
       data
@@ -191,6 +210,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'col' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   async resetObsColumnValues(col, oldValue, newValue) {
     /*
     Set all rows with value 'oldValue' to 'newValue'.
@@ -204,15 +224,18 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
 
     // ensure that we have the data in cache before we manipulate it
     await this.fetch("obs", col);
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     if (!(this as any)._cache.obs.hasCol(col))
       throw new Error("Internal error - user annotation data missing");
 
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     const data = (this as any)._cache.obs.col(col).asArray().slice();
     for (let i = 0, l = data.length; i < l; i += 1) {
       if (data[i] === oldValue) data[i] = newValue;
     }
 
     const newAnnoMatrix = this._clone();
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     newAnnoMatrix._cache.obs = (this as any)._cache.obs.replaceColData(
       col,
       data
@@ -225,6 +248,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
   }
 
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'colSchema' implicitly has an 'any' type... Remove this comment to see the full error message
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   addEmbedding(colSchema) {
     /*
     add new layout to the obs embeddings
@@ -243,6 +267,7 @@ export default class AnnoMatrixLoader extends AnnoMatrix {
    ** Private below
    **/
   // @ts-expect-error ts-migrate(2416) FIXME: Property '_doLoad' in type 'AnnoMatrixLoader' is n... Remove this comment to see the full error message
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   async _doLoad(field, query) {
     /*
     _doLoad - evaluates the query against the field. Returns:

client/src/annoMatrix/middleware.ts

@@ -11,6 +11,7 @@ Undoable metareducer and the AnnoMatrix private API.  It would be helpful
 to make the Undoable interface better factored.
 */
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 const annoMatrixGC = (store: any) => (next: any) => (action: any) => {
   if (_itIsTimeForGC()) {
     _doGC(store);
@@ -34,6 +35,7 @@ function _itIsTimeForGC() {
   return false;
 }
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 function _doGC(store: any) {
   const state = store.getState();
 
@@ -43,7 +45,9 @@ function _doGC(store: any) {
   const undoableFuture = state["@@undoable/future"];
   const undoableStack = undoablePast
     .concat(undoableFuture)
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     .flatMap((snapshot: any) =>
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
       snapshot.filter((v: any) => v[0] === "annoMatrix").map((v: any) => v[1])
     );
   const currentAnnoMatrix = state.annoMatrix;
@@ -53,6 +57,7 @@ function _doGC(store: any) {
   as our current gc algo is more aggressive with those not hot.
   */
   const allAnnoMatrices = new Map(
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     undoableStack.map((m: any) => [m, { isHot: false }])
   );
   let am = currentAnnoMatrix;
@@ -61,6 +66,7 @@ function _doGC(store: any) {
     am = am.viewOf;
   }
   allAnnoMatrices.forEach((hints, annoMatrix) =>
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     (annoMatrix as any)._gc(hints)
   );
 }

client/src/annoMatrix/query.ts

@@ -10,6 +10,7 @@ import { _dubEncURIComp } from "./fetchHelpers";
  * @param {object | string} query - the query
  * @returns {object | string} - the normalized query
  */
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function _queryValidate(query: any) {
   if (typeof query !== "object") return query;
 
@@ -40,10 +41,12 @@ export function _queryValidate(query: any) {
   throw new Error("query must specify one of where or summarize");
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function _expectSimpleQuery(query: any) {
   if (typeof query === "object") throw new Error("expected simple query");
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function _expectComplexQuery(query: any) {
   if (typeof query !== "object") throw new Error("expected complex query");
 }
@@ -55,6 +58,7 @@ export function _expectComplexQuery(query: any) {
  * @param {string|object} query
  * @returns the key
  */
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function _queryCacheKey(field: any, query: any) {
   if (typeof query === "object") {
     // complex query
@@ -84,6 +88,7 @@ export function _queryCacheKey(field: any, query: any) {
   return `${field}/${query}`;
 }
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 function _urlEncodeWhereQuery(q: any) {
   const { field: queryField, column: queryColumn, value: queryValue } = q;
   return `${_dubEncURIComp(queryField)}:${_dubEncURIComp(
@@ -91,14 +96,16 @@ function _urlEncodeWhereQuery(q: any) {
   )}=${_dubEncURIComp(queryValue)}`;
 }
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 function _urlEncodeSummarizeQuery(q: any) {
   const { method, field, column, values } = q;
-  const filter = values
+  const filter = values // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     .map((value: any) => _urlEncodeWhereQuery({ field, column, value }))
     .join("&");
   return `method=${method}&${filter}`;
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function _urlEncodeComplexQuery(q: any) {
   if (typeof q === "object") {
     if (q.where) {
@@ -111,6 +118,7 @@ export function _urlEncodeComplexQuery(q: any) {
   throw new Error("Unrecognized complex query type");
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function _urlEncodeLabelQuery(colKey: any, q: any) {
   if (!colKey) throw new Error("Unsupported query by name");
   if (typeof q !== "string") throw new Error("Query must be a simple label.");
@@ -120,6 +128,7 @@ export function _urlEncodeLabelQuery(colKey: any, q: any) {
 /**
  * Generate the column key the server will send us for this query.
  */
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function _hashStringValues(arrayOfString: any) {
   const hash = sha1(arrayOfString.join(""));
   return hash;

client/src/annoMatrix/schema.ts

@@ -4,6 +4,7 @@ Private helper functions related to schema
 import catLabelSort from "../util/catLabelSort";
 import { unassignedCategoryLabel } from "../globals";
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function _getColumnSchema(schema: any, field: any, col: any) {
   /* look up the column definition */
   switch (field) {
@@ -26,6 +27,7 @@ export function _getColumnSchema(schema: any, field: any, col: any) {
   }
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function _getColumnDimensionNames(schema: any, field: any, col: any) {
   /*
 		field/col may be an alias for multiple columns. Currently used to map ND 
@@ -40,6 +42,7 @@ export function _getColumnDimensionNames(schema: any, field: any, col: any) {
 }
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'schema' implicitly has an 'any' type.
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function _schemaColumns(schema, field) {
   switch (field) {
     case "obs":
@@ -54,6 +57,7 @@ export function _schemaColumns(schema, field) {
 }
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'schema' implicitly has an 'any' type.
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function _getWritableColumns(schema, field) {
   if (field !== "obs") return [];
   return (
@@ -66,12 +70,14 @@ export function _getWritableColumns(schema, field) {
 }
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'schema' implicitly has an 'any' type.
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function _isContinuousType(schema) {
   const { type } = schema;
   return !(type === "string" || type === "boolean" || type === "categorical");
 }
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'colSchema' implicitly has an 'any' type... Remove this comment to see the full error message
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function _normalizeCategoricalSchema(colSchema, col) {
   /*
   Ensure all enum schema types have a categories array, that

client/src/annoMatrix/viewCreators.ts

@@ -5,6 +5,7 @@ instances of AnnoMatrix, implementing common UI functions.
 
 import { AnnoMatrixRowSubsetView, AnnoMatrixClipView } from "./views";
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function isubsetMask(annoMatrix: any, obsMask: any) {
   /*
 		Subset annomatrix to contain the rows which have truish value in the mask.
@@ -14,6 +15,7 @@ export function isubsetMask(annoMatrix: any, obsMask: any) {
 }
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'annoMatrix' implicitly has an 'any' typ... Remove this comment to see the full error message
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function isubset(annoMatrix, obsOffsets) {
   /*
 		Subset annomatrix to contain the positions contained in the obsOffsets array
@@ -27,6 +29,7 @@ export function isubset(annoMatrix, obsOffsets) {
 }
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'annoMatrix' implicitly has an 'any' typ... Remove this comment to see the full error message
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function subset(annoMatrix, obsLabels) {
   /*
 		subset based on labels
@@ -36,6 +39,7 @@ export function subset(annoMatrix, obsLabels) {
 }
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'annoMatrix' implicitly has an 'any' typ... Remove this comment to see the full error message
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function subsetByIndex(annoMatrix, obsIndex) {
   /*
   subset based upon the new obs index.
@@ -44,6 +48,7 @@ export function subsetByIndex(annoMatrix, obsIndex) {
 }
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'annoMatrix' implicitly has an 'any' typ... Remove this comment to see the full error message
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function clip(annoMatrix, qmin, qmax) {
   /*
 		Create a view that clips all continuous data to the [min, max] range.

client/src/annoMatrix/views.ts

@@ -9,6 +9,7 @@ import { _whereCacheCreate } from "./whereCache";
 import { _isContinuousType, _getColumnSchema } from "./schema";
 
 class AnnoMatrixView extends AnnoMatrix {
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   constructor(viewOf: any, rowIndex = null) {
     // @ts-expect-error ts-migrate(2531) FIXME: Object is possibly 'null'.
     const nObs = rowIndex ? rowIndex.size() : viewOf.nObs;
@@ -17,6 +18,7 @@ class AnnoMatrixView extends AnnoMatrix {
     this.isView = true;
   }
 
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   addObsAnnoCategory(col: any, category: any) {
     const newAnnoMatrix = this._clone();
     newAnnoMatrix.viewOf = this.viewOf.addObsAnnoCategory(col, category);
@@ -25,8 +27,11 @@ class AnnoMatrixView extends AnnoMatrix {
   }
 
   async removeObsAnnoCategory(
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     col: any,
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     category: any,
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     unassignedCategory: any
   ) {
     const newAnnoMatrix = this._clone();
@@ -39,6 +44,7 @@ class AnnoMatrixView extends AnnoMatrix {
     return newAnnoMatrix;
   }
 
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   dropObsColumn(col: any) {
     const newAnnoMatrix = this._clone();
     newAnnoMatrix.viewOf = this.viewOf.dropObsColumn(col);
@@ -47,6 +53,7 @@ class AnnoMatrixView extends AnnoMatrix {
     return newAnnoMatrix;
   }
 
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   addObsColumn(colSchema: any, Ctor: any, value: any) {
     const newAnnoMatrix = this._clone();
     newAnnoMatrix.viewOf = this.viewOf.addObsColumn(colSchema, Ctor, value);
@@ -54,6 +61,7 @@ class AnnoMatrixView extends AnnoMatrix {
     return newAnnoMatrix;
   }
 
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   renameObsColumn(oldCol: any, newCol: any) {
     const newAnnoMatrix = this._clone();
     newAnnoMatrix.viewOf = this.viewOf.renameObsColumn(oldCol, newCol);
@@ -61,6 +69,7 @@ class AnnoMatrixView extends AnnoMatrix {
     return newAnnoMatrix;
   }
 
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   async setObsColumnValues(col: any, rowLabels: any, value: any) {
     const newAnnoMatrix = this._clone();
     newAnnoMatrix.viewOf = await this.viewOf.setObsColumnValues(
@@ -73,6 +82,7 @@ class AnnoMatrixView extends AnnoMatrix {
     return newAnnoMatrix;
   }
 
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   async resetObsColumnValues(col: any, oldValue: any, newValue: any) {
     const newAnnoMatrix = this._clone();
     newAnnoMatrix.viewOf = await this.viewOf.resetObsColumnValues(
@@ -85,6 +95,7 @@ class AnnoMatrixView extends AnnoMatrix {
     return newAnnoMatrix;
   }
 
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   addEmbedding(colSchema: any) {
     const newAnnoMatrix = this._clone();
     newAnnoMatrix.viewOf = this.viewOf.addEmbedding(colSchema);
@@ -100,6 +111,7 @@ class AnnoMatrixMapView extends AnnoMatrixView {
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'viewOf' implicitly has an 'any' type.
   constructor(viewOf, mapFn) {
     super(viewOf);
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     (this as any).mapFn = mapFn;
   }
 
@@ -110,6 +122,7 @@ class AnnoMatrixMapView extends AnnoMatrixView {
     const dfMapped = df.mapColumns((colData, colIdx) => {
       const colLabel = df.colIndex.getLabel(colIdx);
       const colSchema = _getColumnSchema(this.schema, field, colLabel);
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
       return (this as any).mapFn(field, colLabel, colSchema, colData, df);
     });
     const whereCacheUpdate = _whereCacheCreate(
@@ -126,12 +139,15 @@ export class AnnoMatrixClipView extends AnnoMatrixMapView {
 	A view which is a clipped transformation of its parent
 	*/
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'viewOf' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   constructor(viewOf, qmin, qmax) {
     // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
     super(viewOf, (field, colLabel, colSchema, colData, df) =>
       _clipAnnoMatrix(field, colLabel, colSchema, colData, df, qmin, qmax)
     );
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     (this as any).isClipped = true;
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     (this as any).clipRange = [qmin, qmax];
     Object.seal(this);
   }
@@ -142,12 +158,14 @@ export class AnnoMatrixRowSubsetView extends AnnoMatrixView {
 	A view which is a subset of total rows.
 	*/
   // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'viewOf' implicitly has an 'any' type.
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   constructor(viewOf, rowIndex) {
     super(viewOf, rowIndex);
     Object.seal(this);
   }
 
   // @ts-expect-error ts-migrate(2416) FIXME: Property '_doLoad' in type 'AnnoMatrixRowSubsetVie... Remove this comment to see the full error message
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
   async _doLoad(field, query) {
     const df = await this.viewOf._fetch(field, query);
 

client/src/annoMatrix/whereCache.ts

@@ -51,10 +51,15 @@ creates a cache entry of:
 import { _getColumnDimensionNames } from "./schema";
 import { _hashStringValues } from "./query";
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function _whereCacheGet(
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   whereCache: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   schema: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   field: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   query: any
 ) {
   /* 
@@ -91,6 +96,7 @@ export function _whereCacheGet(
 }
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'field' implicitly has an 'any' type.
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function _whereCacheCreate(field, query, columnLabels) {
   /*
 	Create a new whereCache
@@ -141,6 +147,7 @@ export function _whereCacheCreate(field, query, columnLabels) {
 function __mergeQueries(dst, src) {
   for (const [queryField, columnMap] of Object.entries(src)) {
     dst[queryField] = dst[queryField] || new Map();
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     for (const [queryColumn, valueMap] of columnMap as any) {
       if (!dst[queryField].has(queryColumn))
         dst[queryField].set(queryColumn, new Map());
@@ -181,6 +188,7 @@ function __whereCacheMerge(dst, src) {
 }
 
 // @ts-expect-error ts-migrate(7019) FIXME: Rest parameter 'caches' implicitly has an 'any[]' ... Remove this comment to see the full error message
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function _whereCacheMerge(...caches) {
   return caches.reduce(__whereCacheMerge, {});
 }