Added @typescript-eslint/recommended config with suppressions (#2345)

* Disabled @blueprintjs/classes-constants. #2288.

* thuang-eslint-bp-off (#2344)

* Disabled @blueprintjs/classes-constants on webpack dev and shared. #2288.

* Added TS recommended, suppress lint errors codemod.

* Added per-error/warning ignore for tests.

* Added per-error/warning ignore for configuration.

* Added per-error/warning ignore for src. Removed suppress package.

* Minor linting.

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>

client/src/util/stateManager/annotationsHelpers.ts

@@ -18,6 +18,7 @@ categorical annotations to be writable.
 */
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'schema' implicitly has an 'any' type.
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function isCategoricalAnnotation(schema, name) {
   /* 
   we treat any string, categorical or boolean as a categorical.
@@ -30,6 +31,7 @@ export function isCategoricalAnnotation(schema, name) {
 }
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'schema' implicitly has an 'any' type.
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function isContinuousAnnotation(schema, name) {
   /*
   Return true/false/undefined
@@ -46,11 +48,13 @@ function _isUserAnnotation(schema, name) {
 }
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'annoMatrix' implicitly has an 'any' typ... Remove this comment to see the full error message
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function isUserAnnotation(annoMatrix, name) {
   return _isUserAnnotation(annoMatrix.schema, name);
 }
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'df' implicitly has an 'any' type.
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function allHaveLabelByMask(df, colName, label, mask) {
   // return true if all rows as indicated by mask have the colname set to label.
   // False if not.
@@ -69,6 +73,7 @@ export function allHaveLabelByMask(df, colName, label, mask) {
 
 const legalCharacters = /^(\w|[ .()-])+$/;
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'name' implicitly has an 'any' type.
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function annotationNameIsErroneous(name) {
   /*
 	Validate the name - return:

client/src/util/stateManager/colorHelpers.ts

@@ -12,10 +12,15 @@ import { range } from "../range";
 given a color mode & accessor, generate an annoMatrix query that will
 fulfill it
 */
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function createColorQuery(
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   colorMode: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   colorByAccessor: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   schema: any,
+  // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
   genesets: any
 ) {
   if (!colorMode || !colorByAccessor || !schema || !genesets) return null;
@@ -66,6 +71,7 @@ export function createColorQuery(
   }
 }
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 function _defaultColors(nObs: any) {
   const defaultCellColor = parseRGB(globals.defaultCellColor);
   return {
@@ -89,9 +95,13 @@ Returns:
   }
 */
 function _createColorTable(
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   colorMode: any,
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   colorByAccessor: any,
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   colorByData: any,
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   schema: any,
   userColors = null
 ) {
@@ -132,6 +142,7 @@ export const createColorTable = memoize(_createColorTable);
  *    - scale: function which given label returns d3 color scale for label
  * Order doesn't matter - everything is keyed by label value.
  */
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function loadUserColorConfig(userColors: any) {
   const convertedUserColors = {};
   Object.keys(userColors).forEach((category) => {
@@ -147,6 +158,7 @@ export function loadUserColorConfig(userColors: any) {
       [{}, {}]
     );
     // @ts-expect-error ts-migrate(7053) FIXME: Element implicitly has an 'any' type because expre... Remove this comment to see the full error message
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     const scale = (label: any) => scaleMap[label];
     // @ts-expect-error ts-migrate(7053) FIXME: Element implicitly has an 'any' type because expre... Remove this comment to see the full error message
     convertedUserColors[category] = { colors, scale };
@@ -155,9 +167,13 @@ export function loadUserColorConfig(userColors: any) {
 }
 
 function _createUserColors(
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   data: any,
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   colorAccessor: any,
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   schema: any,
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   userColors: any
 ) {
   const { colors, scale: scaleByLabel } = userColors[colorAccessor];
@@ -167,7 +183,9 @@ function _createUserColors(
   // See createColorsByCategoricalMetadata() for another example.
   const { categories } = schema.annotations.obsByName[colorAccessor];
   const categoryMap = new Map();
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   categories.forEach((label: any, idx: any) => categoryMap.set(idx, label));
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   const scale = (idx: any) => scaleByLabel(categoryMap.get(idx));
 
   return { rgb, scale };
@@ -175,8 +193,11 @@ function _createUserColors(
 const createUserColors = memoize(_createUserColors);
 
 function _createColorsByCategoricalMetadata(
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   data: any,
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   colorAccessor: any,
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   schema: any
 ) {
   const { categories } = schema.annotations.obsByName[colorAccessor];
@@ -186,6 +207,7 @@ function _createColorsByCategoricalMetadata(
     .domain([0, categories.length]);
 
   /* pre-create colors - much faster than doing it for each obs */
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   const colors = categories.reduce((acc: any, cat: any, idx: any) => {
     acc[cat] = parseRGB(scale(idx));
     return acc;
@@ -198,6 +220,7 @@ const createColorsByCategoricalMetadata = memoize(
   _createColorsByCategoricalMetadata
 );
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 function createRgbArray(data: any, colors: any) {
   const rgb = new Array(data.length);
   for (let i = 0, len = data.length; i < len; i += 1) {
@@ -207,6 +230,7 @@ function createRgbArray(data: any, colors: any) {
   return rgb;
 }
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 function _createColorsByContinuousMetadata(data: any, min: any, max: any) {
   const colorBins = 100;
   const scale = d3

client/src/util/stateManager/controlsHelpers.ts

@@ -35,10 +35,12 @@ Remember that option values can be ANY js type, except undefined/null.
     }
   }
 */
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 function topNCategories(colSchema: any, summary: any, N: any) {
   /* return top N categories by occurrences in the data */
   const { categories: allCategories } = colSchema;
   const counts = allCategories.map(
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     (cat: any) => summary.categoryCounts.get(cat) ?? 0
   );
 
@@ -47,6 +49,7 @@ function topNCategories(colSchema: any, summary: any, N: any) {
   }
 
   const sortIndex = fillRange(new Array(allCategories.length)).sort(
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     (a: any, b: any) => counts[b] - counts[a]
   );
   const topNindices = new Set(sortIndex.slice(0, N));
@@ -62,6 +65,7 @@ function topNCategories(colSchema: any, summary: any, N: any) {
   return [allCategories, _topNCategories, topNCounts];
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function isSelectableCategoryName(schema: any, name: any) {
   const { index } = schema.annotations.obs;
   const colSchema = schema.annotations.obsByName[name];
@@ -72,6 +76,7 @@ export function isSelectableCategoryName(schema: any, name: any) {
   );
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function selectableCategoryNames(schema: any, names: any) {
   /*
   return all obs annotation names that are categorical AND have a
@@ -80,10 +85,13 @@ export function selectableCategoryNames(schema: any, names: any) {
   If the initial name list not provided, use everything in the schema.
   */
   if (!schema) return [];
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   if (!names) names = schema.annotations.obs.columns.map((c: any) => c.name);
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   return names.filter((name: any) => isSelectableCategoryName(schema, name));
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function createCategorySummaryFromDfCol(dfCol: any, colSchema: any) {
   const N = globals.maxCategoricalOptionsToDisplay;
   const { writable: isUserAnno } = colSchema;
@@ -100,6 +108,7 @@ export function createCategorySummaryFromDfCol(dfCol: any, colSchema: any) {
     categoryValueCounts,
   ] = topNCategories(colSchema, summary, N);
   const categoryValueIndices = new Map(
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     categoryValues.map((v: any, i: any) => [v, i])
   );
   const numCategoryValues = categoryValueIndices.size;
@@ -116,10 +125,13 @@ export function createCategorySummaryFromDfCol(dfCol: any, colSchema: any) {
   };
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function createCategoricalSelection(names: any) {
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   return fromEntries(names.map((name: any) => [name, new Map()]));
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function pruneVarDataCache(varData: any, needed: any) {
   /*
   Remove any unneeded columns from the varData dataframe.  Will only

client/src/util/stateManager/matrix.ts

@@ -17,12 +17,14 @@ Matrix flatbuffer decoding support.   See fbs/matrix.fbs
 /*
 Decode NetEncoding.TypedArray
 */
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 function decodeTypedArray(uType: any, uValF: any, inplace = false) {
   if (uType === NetEncoding.TypedArray.NONE) {
     return null;
   }
 
   // Convert to a JS class that supports this type
+  // @ts-expect-error --- FIXME: Element implicitly has an 'any' type.
   const TypeClass = NetEncoding[NetEncoding.TypedArray[uType]];
   // Create a TypedArray that references the underlying buffer
   let arr = uValF(new TypeClass()).dataArray();
@@ -48,6 +50,7 @@ Returns: object containing decoded Matrix:
   colIdx: []|null
 }
 */
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function decodeMatrixFBS(arrayBuffer: any, inplace = false) {
   const bb = new flatbuffers.ByteBuffer(new Uint8Array(arrayBuffer));
   const matrix = NetEncoding.Matrix.getRootAsMatrix(bb);
@@ -79,8 +82,11 @@ export function decodeMatrixFBS(arrayBuffer: any, inplace = false) {
   };
 }
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 function encodeTypedArray(builder: any, uType: any, uData: any) {
+  // @ts-expect-error --- FIXME: Element implicitly has an 'any' type.
   const uTypeName = NetEncoding.TypedArray[uType];
+  // @ts-expect-error --- FIXME: Element implicitly has an 'any' type.
   const ArrayType = NetEncoding[uTypeName];
   const dv = ArrayType.createDataVector(builder, uData);
   builder.startObject(1);
@@ -88,6 +94,7 @@ function encodeTypedArray(builder: any, uType: any, uData: any) {
   return builder.endObject();
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function encodeMatrixFBS(df: any) {
   /*
   encode the dataframe as an FBS Matrix
@@ -108,12 +115,15 @@ export function encodeMatrixFBS(df: any) {
   let encColumns;
 
   if (shape[0] > 0 && shape[1] > 0) {
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     const columns = df.columns().map((col: any) => col.asArray());
 
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     const cols = columns.map((carr: any) => {
       let uType;
       let tarr;
       if (isTypedArray(carr)) {
+        // @ts-expect-error --- FIXME: Element implicitly has an 'any' type.
         uType = NetEncoding.TypedArray[carr.constructor.name];
         tarr = encodeTypedArray(builder, uType, carr);
       } else {
@@ -169,6 +179,7 @@ export function encodeMatrixFBS(df: any) {
   return builder.asUint8Array();
 }
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 function promoteTypedArray(o: any) {
   /*
   Decide what internal data type to use for the data returned from
@@ -201,6 +212,7 @@ function promoteTypedArray(o: any) {
   return new TypedArrayCtor(o);
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function matrixFBSToDataframe(arrayBuffers: any) {
   /*
   Convert array of Matrix FBS to a Dataframe.
@@ -217,18 +229,22 @@ export function matrixFBSToDataframe(arrayBuffers: any) {
     arrayBuffers = [arrayBuffers];
   }
   if (arrayBuffers.length === 0) {
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     return (Dataframe as any).Dataframe.empty();
   }
 
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   const fbs = arrayBuffers.map((ab: any) => decodeMatrixFBS(ab, true)); // leave in place
   /* check that all FBS have same row dimensionality */
   const { nRows } = fbs[0];
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   fbs.forEach((b: any) => {
     if (b.nRows !== nRows)
       throw new Error("FBS with inconsistent dimensionality");
   });
-  const columns = fbs
+  const columns = fbs // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     .map((fb: any) =>
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
       fb.columns.map((c: any) => {
         if (isFpTypedArray(c) || Array.isArray(c)) return c;
         return promoteTypedArray(c);
@@ -236,7 +252,7 @@ export function matrixFBSToDataframe(arrayBuffers: any) {
     )
     .flat();
   // colIdx may be TypedArray or Array
-  const colIdx = fbs
+  const colIdx = fbs // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     .map((b: any) =>
       Array.isArray(b.colIdx) ? b.colIdx : Array.from(b.colIdx)
     )

client/src/util/stateManager/schemaHelpers.ts

@@ -15,24 +15,30 @@ System wide schema assumptions:
   - schema will be internally self-consistent (eg, index matches columns)
 */
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function indexEntireSchema(schema: any) {
   /* Index schema for ease of use */
   schema.annotations.obsByName = fromEntries(
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     schema.annotations?.obs?.columns?.map((v: any) => [v.name, v]) ?? []
   );
   schema.annotations.varByName = fromEntries(
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     schema.annotations?.var?.columns?.map((v: any) => [v.name, v]) ?? []
   );
   schema.layout.obsByName = fromEntries(
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     schema.layout?.obs?.map((v: any) => [v.name, v]) ?? []
   );
   schema.layout.varByName = fromEntries(
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     schema.layout?.var?.map((v: any) => [v.name, v]) ?? []
   );
 
   return schema;
 }
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 function _copyObsAnno(schema: any) {
   /* redux copy conventions - WARNING, only for modifying obs annotations */
   return {
@@ -44,6 +50,7 @@ function _copyObsAnno(schema: any) {
   };
 }
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 function _copyObsLayout(schema: any) {
   return {
     ...schema,
@@ -54,36 +61,44 @@ function _copyObsLayout(schema: any) {
   };
 }
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 function _reindexObsAnno(schema: any) {
   /* reindex obs annotations ONLY */
   schema.annotations.obsByName = fromEntries(
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     schema.annotations.obs.columns.map((v: any) => [v.name, v])
   );
   return schema;
 }
 
+// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
 function _reindexObsLayout(schema: any) {
   schema.layout.obsByName = fromEntries(
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     schema.layout.obs.map((v: any) => [v.name, v])
   );
   return schema;
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function removeObsAnnoColumn(schema: any, name: any) {
   const newSchema = _copyObsAnno(schema);
   newSchema.annotations.obs.columns = schema.annotations.obs.columns.filter(
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
     (v: any) => v.name !== name
   );
   return _reindexObsAnno(newSchema);
 }
 
 // @ts-expect-error ts-migrate(6133) FIXME: 'name' is declared but its value is never read.
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function addObsAnnoColumn(schema: any, name: any, defn: any) {
   const newSchema = _copyObsAnno(schema);
   newSchema.annotations.obs.columns.push(defn);
   return _reindexObsAnno(newSchema);
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function removeObsAnnoCategory(schema: any, name: any, category: any) {
   /* remove a category from a categorical annotation */
   const categories = schema.annotations.obsByName[name]?.categories;
@@ -100,6 +115,7 @@ export function removeObsAnnoCategory(schema: any, name: any, category: any) {
   return newSchema;
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function addObsAnnoCategory(schema: any, name: any, category: any) {
   /* add a category to a categorical annotation */
   const categories = schema.annotations.obsByName[name]?.categories;
@@ -120,6 +136,7 @@ export function addObsAnnoCategory(schema: any, name: any, category: any) {
   return newSchema;
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function addObsLayout(schema: any, layout: any) {
   /* add or replace a layout */
   const newSchema = _copyObsLayout(schema);
@@ -127,9 +144,11 @@ export function addObsLayout(schema: any, layout: any) {
   return _reindexObsLayout(newSchema);
 }
 
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types, @typescript-eslint/no-explicit-any -- - FIXME: disabled temporarily on migrate to TS.
 export function removeObsLayout(schema: any, name: any) {
   /* remove a layout */
   const newSchema = _copyObsLayout(schema);
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
   newSchema.layout.obs = schema.layout.obs.filter((v: any) => v.name !== name);
   return _reindexObsLayout(newSchema);
 }

client/src/util/stateManager/viewStackHelpers.ts

@@ -39,6 +39,7 @@ import { clip, isubsetMask, isubset } from "../../annoMatrix";
 import { memoize } from "../dataframe/util";
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'annoMatrix' implicitly has an 'any' typ... Remove this comment to see the full error message
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function _clipAnnoMatrix(annoMatrix, min, max) {
   /*
   clip the annoMatrix.
@@ -49,6 +50,7 @@ export function _clipAnnoMatrix(annoMatrix, min, max) {
 }
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'annoMatrix' implicitly has an 'any' typ... Remove this comment to see the full error message
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function _userSubsetAnnoMatrix(annoMatrix, mask) {
   /*
   user-requested row subset of annoMatrix, to be added on top of any 
@@ -71,6 +73,7 @@ export function _userSubsetAnnoMatrix(annoMatrix, mask) {
 }
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'annoMatrix' implicitly has an 'any' typ... Remove this comment to see the full error message
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function _userResetSubsetAnnoMatrix(annoMatrix) {
   /*
   Reset/remove all user-requested subsets.  Do not remove clip or embedding subset.
@@ -97,6 +100,7 @@ export function _userResetSubsetAnnoMatrix(annoMatrix) {
 }
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'annoMatrix' implicitly has an 'any' typ... Remove this comment to see the full error message
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function _setEmbeddingSubset(annoMatrix, embeddingDf) {
   /*
   Set the embedding subset view.  Only create a subset view for the embedding
@@ -164,6 +168,7 @@ function _getEmbeddingRowOffsets(baseRowIndex, embeddingDf) {
 }
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'embeddingDf' implicitly has an 'any' ty... Remove this comment to see the full error message
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function _getDiscreteCellEmbeddingRowIndex(embeddingDf) {
   const idx = _getEmbeddingRowOffsets(embeddingDf.rowIndex, embeddingDf);
   if (idx === null) return embeddingDf.rowIndex;
@@ -176,6 +181,7 @@ export const getDiscreteCellEmbeddingRowIndex = memoize(
 );
 
 // @ts-expect-error ts-migrate(7006) FIXME: Parameter 'annoMatrix' implicitly has an 'any' typ... Remove this comment to see the full error message
+// eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types --- FIXME: disabled temporarily on migrate to TS.
 export function getEmbSubsetView(annoMatrix) {
   /* if there is an embedding subset in the view stack, return it.  Falsish if not. */
   while (annoMatrix.isView) {