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update index links to include 'post' directory (#1666)

Browse Source 
* update index links to include 'post' directory

* rebuild github pages site

* document how to develop documentation

* build, not serve
This commit is contained in:
Ambrose J Carr
2020-07-24 00:49:57 -04:00
committed by GitHub
parent 0344cfacce
commit 27f75641cc
15 changed files with 73 additions and 58 deletions
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15
dev_docs/developer_guidelines.md
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@@ -151,3 +151,18 @@ If you would like to run the smoke tests against a hot-reloaded version of the c
- You can also install/launch the server side code from npm scrips (requires python3.6 with virtualenv) with the `scripts/backend_dev` script.
- Check out [e2e Tests](e2e_tests.md) for more details
## Doc changes
To evaluate changes to documentation in `cellxgene/docs`, you must install [jekyll](https://jekyllrb.com/docs/installation/), then run:
```bash
cd docs
bundle install
bundle exec jekyll serve
```
If changes look good, run the following, then commit and push:
```bash
bundle exec jekyll build
```

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docs/_site/index.html
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<title>Index | cellxgene</title>
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<meta property="og:title" content="Index" />
<meta property="og:locale" content="en_US" />
<meta name="description" content="An interactive explorer for single-cell transcriptomics data" />
@@ -16,10 +16,10 @@
<meta property="og:url" content="https://chanzuckerberg.github.io/cellxgene/" />
<meta property="og:site_name" content="cellxgene" />
<script type="application/ld+json">
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@@ -99,7 +99,7 @@
<p>Whether you need to visualize one thousand cells or one million, cellxgene helps you gain insight into your single-cell data.</p>
<p>To install cellxgene you need Python 3.6+. We recommend <a href="install">installing cellxgene into a conda or virtual environment.</a></p>
<p>To install cellxgene you need Python 3.6+. We recommend <a href="posts/install">installing cellxgene into a conda or virtual environment.</a></p>
<p>Install the package.</p>
<div class="language-bash highlighter-rouge"><div class="highlight"><pre class="highlight"><code>pip <span class="nb">install </span>cellxgene
@@ -110,8 +110,8 @@
<div class="language-bash highlighter-rouge"><div class="highlight"><pre class="highlight"><code>cellxgene launch https://cellxgene-example-data.czi.technology/pbmc3k.h5ad
</code></pre></div></div>
<p>To explore more datasets already formatted for cellxgene, check out the <a href="demo-data">Demo data</a> or
see <a href="prepare">Preparing your data</a> to learn more about formatting your own
<p>To explore more datasets already formatted for cellxgene, check out the <a href="posts/demo-data">Demo data</a> or
see <a href="posts/prepare">Preparing your data</a> to learn more about formatting your own
data for cellxgene.</p>
<h1 id="getting-help">Getting help</h1>

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<meta name="description" content="Creating annotations" />
@@ -16,10 +16,10 @@
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@@ -16,10 +16,10 @@
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<meta property="og:site_name" content="cellxgene" />
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@@ -16,10 +16,10 @@
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<meta name="description" content="Demo datasets" />
@@ -16,10 +16,10 @@
<meta property="og:url" content="https://chanzuckerberg.github.io/cellxgene/posts/demo-data.html" />
<meta property="og:site_name" content="cellxgene" />
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@@ -16,10 +16,10 @@
<meta property="og:url" content="https://chanzuckerberg.github.io/cellxgene/posts/gallery.html" />
<meta property="og:site_name" content="cellxgene" />
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Whether you need to visualize one thousand cells or one million, cellxgene helps you gain insight into your single-cell data.
To install cellxgene you need Python 3.6+. We recommend [installing cellxgene into a conda or virtual environment.](install)
To install cellxgene you need Python 3.6+. We recommend [installing cellxgene into a conda or virtual environment.](posts/install)
Install the package.
``` bash
@@ -20,8 +20,8 @@ Launch cellxgene with an example [anndata](https://anndata.readthedocs.io/en/lat
cellxgene launch https://cellxgene-example-data.czi.technology/pbmc3k.h5ad
```
To explore more datasets already formatted for cellxgene, check out the [Demo data](demo-data) or
see [Preparing your data](prepare) to learn more about formatting your own
To explore more datasets already formatted for cellxgene, check out the [Demo data](posts/demo-data) or
see [Preparing your data](posts/prepare) to learn more about formatting your own
data for cellxgene.
# Getting help