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add hcl dataset (#1366)

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Bruce Martin
2020-04-07 07:51:32 -07:00
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parent 6193ae4997
commit 3b341a7191
14 changed files with 23 additions and 16 deletions
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docs/_site/index.html
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{"description":"An interactive explorer for single-cell transcriptomics data","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"http://localhost:4000/cellxgene/cellxgene-logo.png"}},"@type":"WebSite","headline":"Index","url":"http://localhost:4000/cellxgene/","name":"cellxgene","@context":"http://schema.org"}</script>
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docs/_site/posts/annotations.html
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{"description":"Creating annotations","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"http://localhost:4000/cellxgene/cellxgene-logo.png"}},"@type":"WebPage","headline":"annotations","url":"http://localhost:4000/cellxgene/posts/annotations.html","@context":"http://schema.org"}</script>
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<p>There are two options for updating draft annotations.</p>
<h3 id="autodetect-annotations-csv">Autodetect annotations csv</h3>
<h3 id="autodetect-annotations-csv">Autodetect annotations CSV</h3>
<p>Cellxgene will automatically find and reload your draft annotations in editable mode.</p>
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2 - You launch cellxgene from the <code class="language-plaintext highlighter-rouge">annotations-directory</code> (i.e., the directory that contains your CSV)<br />
3 - You use the same browser and have not cleared your cookies (we use a small cookie to keep track of which user created the file to avoid accidental overwrites; see FAQ)</p>
<h3 id="specify-an-annotations-csv">Specify an annotations csv</h3>
<h3 id="specify-an-annotations-csv">Specify an annotations CSV</h3>
<p><strong>This mode is only appropriate for single-user, local cellxgene instances</strong></p>
<p><strong>This mode is only appropriate for single-user, local cellxgene instances.</strong></p>
<p>If you’d like to specify the complete file path for your annotations, you can do so by running:</p>
docs/_site/posts/contact.html
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{"description":"Contact","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"http://localhost:4000/cellxgene/cellxgene-logo.png"}},"@type":"WebPage","headline":"Contact","url":"http://localhost:4000/cellxgene/posts/contact.html","@context":"http://schema.org"}</script>
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docs/_site/posts/contribute.html
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{"description":"An interactive explorer for single-cell transcriptomics data","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"http://localhost:4000/cellxgene/cellxgene-logo.png"}},"@type":"WebPage","headline":"Code of conduct","url":"http://localhost:4000/cellxgene/posts/contribute.html","@context":"http://schema.org"}</script>
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docs/_site/posts/demo-data.html
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{"description":"Demo datasets","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"http://localhost:4000/cellxgene/cellxgene-logo.png"}},"@type":"WebPage","headline":"demo-data","url":"http://localhost:4000/cellxgene/posts/demo-data.html","@context":"http://schema.org"}</script>
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<link rel="stylesheet" href="/cellxgene/assets/css/style.css?v=88411ae4b44d899609d211ed2db5c41e4fba3068">
<link rel="stylesheet" href="/cellxgene/assets/css/style.css?v=6193ae49975e7bccac34c95b3d13d42f74d6fcee">
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<script src="https://cdnjs.cloudflare.com/ajax/libs/html5shiv/3.7.3/html5shiv.min.js"></script>
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docs/_site/posts/gallery.html
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{"description":"An interactive explorer for single-cell transcriptomics data","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"http://localhost:4000/cellxgene/cellxgene-logo.png"}},"@type":"WebPage","headline":"Gallery","url":"http://localhost:4000/cellxgene/posts/gallery.html","@context":"http://schema.org"}</script>
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<link rel="stylesheet" href="/cellxgene/assets/css/style.css?v=88411ae4b44d899609d211ed2db5c41e4fba3068">
<link rel="stylesheet" href="/cellxgene/assets/css/style.css?v=6193ae49975e7bccac34c95b3d13d42f74d6fcee">
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docs/_site/posts/hosted.html
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{"description":"An interactive explorer for single-cell transcriptomics data","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"http://localhost:4000/cellxgene/cellxgene-logo.png"}},"@type":"WebPage","headline":"Hosting cellxgene on the web","url":"http://localhost:4000/cellxgene/posts/hosted.html","@context":"http://schema.org"}</script>
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<link rel="stylesheet" href="/cellxgene/assets/css/style.css?v=88411ae4b44d899609d211ed2db5c41e4fba3068">
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docs/_site/posts/install.html
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{"description":"An interactive explorer for single-cell transcriptomics data","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"http://localhost:4000/cellxgene/cellxgene-logo.png"}},"@type":"WebPage","headline":"Install","url":"http://localhost:4000/cellxgene/posts/install.html","@context":"http://schema.org"}</script>
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docs/_site/posts/launch.html
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{"description":"Demo datasets","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"http://localhost:4000/cellxgene/cellxgene-logo.png"}},"@type":"WebPage","headline":"demo-data","url":"http://localhost:4000/cellxgene/posts/launch.html","@context":"http://schema.org"}</script>
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<link rel="stylesheet" href="/cellxgene/assets/css/style.css?v=88411ae4b44d899609d211ed2db5c41e4fba3068">
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docs/_site/posts/methods.html
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{"description":"An interactive explorer for single-cell transcriptomics data","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"http://localhost:4000/cellxgene/cellxgene-logo.png"}},"@type":"WebPage","headline":"Methods","url":"http://localhost:4000/cellxgene/posts/methods.html","@context":"http://schema.org"}</script>
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docs/_site/posts/prepare.html
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{"description":"Preparing your data","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"http://localhost:4000/cellxgene/cellxgene-logo.png"}},"@type":"WebPage","headline":"prepare","url":"http://localhost:4000/cellxgene/posts/prepare.html","@context":"http://schema.org"}</script>
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docs/_site/posts/roadmap.html
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{"description":"Roadmap","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"http://localhost:4000/cellxgene/cellxgene-logo.png"}},"@type":"WebPage","headline":"roadmap","url":"http://localhost:4000/cellxgene/posts/roadmap.html","@context":"http://schema.org"}</script>
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docs/_site/posts/troubleshooting.html
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{"description":"Troubleshooting","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"http://localhost:4000/cellxgene/cellxgene-logo.png"}},"@type":"WebPage","headline":"Troubleshooting","url":"http://localhost:4000/cellxgene/posts/troubleshooting.html","@context":"http://schema.org"}</script>
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docs/posts/cellxgene_cziscience_com.md
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<a href="https://github.com/krasnowlab/hlca">HLCA website</a>
</td>
</tr>
<tr>
<td><a href="https://cellxgene.cziscience.com/d/human_cell_landscape-3.cxg/" target="_blank">Human Cell Landscape</a></td>
<td>
<a href="https://person.zju.edu.cn/en/ggj">Guo Lab</a>,
<a href="http://bis.zju.edu.cn/HCL/">HCL website</a>
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</table>