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debug
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11
.github/workflows/compatibility_tests.yml
vendored
11
.github/workflows/compatibility_tests.yml
vendored
@@ -7,6 +7,10 @@ on:
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branches:
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- main
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# For debug - uncomment below to run on all PRs
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pull_request:
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branches: "*"
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env:
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JEST_ENV: prod
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@@ -28,13 +32,14 @@ jobs:
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strategy:
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fail-fast: false
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matrix:
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# note: The `macos-latest` is latest Catalina version, and not Big Sur. So we explicitly ask for Big Sur (`macos-11`)
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os: [ubuntu-latest, macos-latest, macos-13]
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python-version: ["3.10", "3.11", "3.12"]
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python-version: ["3.10", "3.11"]
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cellxgene_build: [main, latest]
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# add anndata pinned version test for subset of matrix configurations,
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# in order to reduce matrix cross-product explosion
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include:
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- python-version: 3.12
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- python-version: 3.11
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cellxgene_build: latest
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# TODO: dynamically use the literal version in requirements.txt,
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# to avoid having to update this in manually in the future
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@@ -95,7 +100,7 @@ jobs:
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# keep same pip pkg versions as in the cxg release
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sed -i'' -e 's/-r requirements.txt//' server/requirements-dev.txt
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pip install -r server/requirements-dev.txt
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pip install --force-reinstall numpy==2.0.1 numba>=0.60.0 pandas flatbuffers==2.0.7
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pip install --force-reinstall numpy==2.0.1 numba>=0.60.0 pandas
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- name: Install anndata version per matrix variable
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run: pip install anndata${{ matrix.anndata_version }}
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- name: Install node
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