mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-17 13:58:00 +08:00
@@ -4,10 +4,8 @@
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"license": "MIT",
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"repository": "https://github.com/chanzuckerberg/cellxgene",
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"scripts": {
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"build":
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"npm run clean && webpack --config configuration/webpack/webpack.config.prod.js",
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"dev":
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"npm run clean && webpack --config configuration/webpack/webpack.config.dev.js",
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"build": "npm run clean && webpack --config configuration/webpack/webpack.config.prod.js",
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"dev": "npm run clean && webpack --config configuration/webpack/webpack.config.dev.js",
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"clean": "rimraf build",
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"start": "node server/development.js",
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"lint": "eslint src",
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@@ -35,9 +33,10 @@
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"express": "^4.14.0",
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"font-color-contrast": "^1.0.3",
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"gl-mat4": "^1.1.4",
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"gl-matrix": "^2.4.0",
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"gl-matrix": "^2.7.1",
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"halogen": "^0.2.0",
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"hsv2rgb": "^1.1.0",
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"jest": "^23.4.1",
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"key-pressed": "0.0.1",
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"lodash": "^4.17.4",
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"luma.gl": "^4.0.3",
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@@ -45,9 +44,9 @@
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"mouse-pressed": "^1.0.0",
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"orbit-camera": "^1.0.0",
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"query-string": "^5.0.0",
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"react": "^15.3.0",
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"react": "^16.4.1",
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"react-autocomplete": "^1.7.2",
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"react-dom": "^15.3.0",
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"react-dom": "^16.4.1",
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"react-helmet": "^5.2.0",
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"react-hot-loader": "^3.0.0-beta.7",
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"react-icons": "^2.2.7",
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@@ -59,6 +58,7 @@
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"scroll-speed": "^1.0.0",
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"serve-favicon": "^2.3.0",
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"urijs": "^1.19.0",
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"webpack-hot-middleware": "^2.22.3",
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"whatwg-fetch": "^2.0.3"
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},
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"devDependencies": {
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@@ -4,7 +4,7 @@ import _ from "lodash";
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import Helmet from "react-helmet";
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import Container from "./framework/container";
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import { connect } from "react-redux";
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import PulseLoader from "halogen/PulseLoader";
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// import PulseLoader from "halogen/PulseLoader";
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import LeftSideBar from "./leftsidebar";
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import Parallel from "./continuous/parallel";
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@@ -69,7 +69,7 @@ class App extends React.Component {
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<div
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style={{ position: "fixed", left: window.innerWidth / 2, top: 150 }}
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>
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<PulseLoader color="rgb(0,0,0)" size="10px" margin="4px" />
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{/*<PulseLoader color="rgb(0,0,0)" size="10px" margin="4px" />*/}
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<span
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style={{ fontFamily: globals.accentFont, fontStyle: "italic" }}
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>
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@@ -51,10 +51,6 @@ class Continuous extends React.Component {
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dimensions: null
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};
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}
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componentDidMount() {}
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componentWillReceiveProps(nextProps) {}
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componentDidMount() {}
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handleBrushAction(selection) {
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this.props.dispatch({
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type: "continuous selection using parallel coords brushing",
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@@ -49,9 +49,6 @@ class HistogramBrush extends React.Component {
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brush: null
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};
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}
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componentDidMount() {}
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componentDidUpdate() {}
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calcHistogramCache(nextProps) {
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// recalculate expensive stuff
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const allValuesForContinuousFieldAsArray = _.map(
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@@ -80,14 +77,6 @@ class HistogramBrush extends React.Component {
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componentWillMount() {
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this.calcHistogramCache(this.props);
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}
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componentWillReceiveProps(nextProps) {
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if (
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this.props.metadataField !== nextProps.metadataField ||
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!this.histogramCache.x
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) {
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this.calcHistogramCache(nextProps);
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}
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}
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onBrush(selection, x) {
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return () => {
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@@ -102,27 +102,26 @@ class ContinuousLegend extends React.Component {
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super(props);
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this.state = {};
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}
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componentWillReceiveProps(nextProps) {
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componentDidUpdate(prevProps) {
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if (
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nextProps.colorAccessor !== this.props.colorAccessor ||
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nextProps.responsive.height !== this.props.responsive.height ||
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nextProps.responsive.width !== this.props.responsive.width
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prevProps.colorAccessor !== this.props.colorAccessor ||
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prevProps.responsive.height !== this.props.responsive.height ||
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prevProps.responsive.width !== this.props.responsive.width
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) {
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/* always remove it, if it's not continuous we don't put it back. */
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d3
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.select("#continuous_legend")
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d3.select("#continuous_legend")
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.selectAll("*")
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.remove();
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}
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if (nextProps.colorAccessor && nextProps.colorScale) {
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if (this.props.colorAccessor && this.props.colorScale) {
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/* fragile! continuous range is 0 to 1, not [#fa4b2c, ...], make this a flag? */
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if (nextProps.colorScale.range()[0][0] !== "#") {
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if (this.props.colorScale.range()[0][0] !== "#") {
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continuous(
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"#continuous_legend",
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d3
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.scaleSequential(d3.interpolateViridis)
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.domain(nextProps.colorScale.domain())
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.domain(this.props.colorScale.domain())
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);
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}
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}
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@@ -117,10 +117,19 @@ class Graph extends React.Component {
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reglRender
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});
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}
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componentWillReceiveProps(nextProps) {
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if (this.state.regl && nextProps.crossfilter) {
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componentDidUpdate(prevProps, prevState) {
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if (
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this.state.reglRender &&
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this.reglRenderState === "rendering" &&
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this.state.mode !== "zoom"
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) {
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this.state.reglRender.cancel();
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this.reglRenderState = "paused";
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}
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if (this.state.regl && this.props.crossfilter) {
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/* update the regl state */
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const crossfilter = nextProps.crossfilter.cells;
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const crossfilter = this.props.crossfilter.cells;
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const cells = crossfilter.all();
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const cellCount = cells.length;
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@@ -129,7 +138,7 @@ class Graph extends React.Component {
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//
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if (
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!this.renderCache.positions ||
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this.props.crossfilter.cells != nextProps.crossfilter.cells
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this.props.crossfilter.cells != prevProps.crossfilter.cells
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) {
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if (!this.renderCache.positions)
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this.renderCache.positions = new Float32Array(2 * cellCount);
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@@ -161,7 +170,7 @@ class Graph extends React.Component {
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// we could add some sort of color-specific indicator to the app state.
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if (
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!this.renderCache.colors ||
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this.props.cellsMetadata != nextProps.cellsMetadata
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this.props.cellsMetadata != prevProps.cellsMetadata
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) {
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if (!this.renderCache.colors)
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this.renderCache.colors = new Float32Array(3 * cellCount);
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@@ -178,7 +187,7 @@ class Graph extends React.Component {
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//
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if (
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!this.renderCache.sizes ||
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this.props.crossfilter.cells != nextProps.crossfilter.cells
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this.props.crossfilter.cells != prevProps.crossfilter.cells
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) {
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this.renderCache.sizes = new Float32Array(cellCount);
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}
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@@ -200,33 +209,22 @@ class Graph extends React.Component {
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if (
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/* invisibly handles the initial null vs integer case as well as resize events */
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nextProps.responsive.height !== this.props.responsive.height ||
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nextProps.responsive.width !== this.props.responsive.width
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prevProps.responsive.height !== this.props.responsive.height ||
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prevProps.responsive.width !== this.props.responsive.width
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) {
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/* clear out whatever was on the div, even if nothing, but usually the brushes etc */
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d3
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.select("#graphAttachPoint")
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d3.select("#graphAttachPoint")
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.selectAll("svg")
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.remove();
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const { svg, brush, brushContainer } = setupSVGandBrushElements(
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this.handleBrushSelectAction.bind(this),
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this.handleBrushDeselectAction.bind(this),
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nextProps.responsive,
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this.props.responsive,
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this.graphPaddingTop
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);
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this.setState({ svg, brush, brushContainer });
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}
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}
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componentDidUpdate() {
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if (
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this.state.reglRender &&
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this.reglRenderState === "rendering" &&
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this.state.mode !== "zoom"
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) {
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this.state.reglRender.cancel();
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this.reglRenderState = "paused";
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}
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}
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handleBrushSelectAction() {
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/* This conditional handles procedural brush deselect. Brush emits an event on procedural deselect because it is move: null */
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if (d3.event.sourceEvent !== null) {
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@@ -251,7 +249,7 @@ class Graph extends React.Component {
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// transform screen coordinates -> cell coordinates
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const invert = pin => {
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const x =
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2 * pin[0] / (this.props.responsive.height - this.graphPaddingTop) -
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(2 * pin[0]) / (this.props.responsive.height - this.graphPaddingTop) -
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1;
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const y =
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2 *
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@@ -123,21 +123,6 @@ class Scatterplot extends React.Component {
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colorBuffer
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});
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}
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componentWillReceiveProps(nextProps) {
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if (
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nextProps.expression &&
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nextProps.expression.data &&
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nextProps.scatterplotXXaccessor &&
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nextProps.scatterplotYYaccessor
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) {
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const scales = this.setupScales(
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nextProps.expression,
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nextProps.scatterplotXXaccessor,
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nextProps.scatterplotYYaccessor
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);
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this.setState(scales);
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}
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}
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componentDidUpdate(prevProps) {
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if (
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this.state.svg &&
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@@ -213,6 +198,22 @@ class Scatterplot extends React.Component {
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this.state.sizeBuffer({ data: sizes, dimension: 1 });
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this.count = cellCount;
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}
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if (
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this.props.expression &&
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this.props.expression.data &&
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this.props.scatterplotXXaccessor &&
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this.props.scatterplotYYaccessor &&
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(this.props.scatterplotXXaccessor !== prevProps.scatterplotXXaccessor || // was CLU now FTH1 etc
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this.props.scatterplotYYaccessor !== prevProps.scatterplotYYaccessor)
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) {
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const scales = this.setupScales(
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this.props.expression,
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this.props.scatterplotXXaccessor,
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this.props.scatterplotYYaccessor
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);
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this.setState(scales);
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}
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}
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setupScales(expression, scatterplotXXaccessor, scatterplotYYaccessor) {
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const xScale = d3
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Reference in New Issue
Block a user