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Sidney Bell
2019-11-22 11:26:55 -08:00
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@@ -12,7 +12,7 @@ Categorical (e.g., cluster labels) and continuous (e.g., pseudotime) metadata ar
### Embeddings ### Embeddings
Cellxgene looks for embeddings (e.g., tSNE, UMAP, PCA, spatial coordinates) in `anndata.obsm`. These fields must follow the scanpy convention of starting with `X_`, e.g., `anndata.obsm['X_umap']`. If an embedding has more than two components, the first two will be used for visualization. cellxgene looks for embeddings (e.g., tSNE, UMAP, PCA, spatial coordinates) in `anndata.obsm`. These fields must follow the scanpy convention of starting with `X_`, e.g., `anndata.obsm['X_umap']`. If an embedding has more than two components, the first two will be used for visualization.
## Differential expression ## Differential expression