Updating to latest cellxgene client code

Fixes the build error in the old version. 

Reverted the API version since we changed directions from updating the API to refactoring the server structure instead.
This commit is contained in:
Charlotte Weaver
2018-07-05 13:37:26 -07:00
parent 2da62720dd
commit 85506db971
18 changed files with 845 additions and 147 deletions

View File

@@ -51,6 +51,7 @@ class Scatterplot extends React.Component {
constructor(props) {
super(props);
this.count = 0;
this.axes = false;
this.state = {
svg: null,
// ctx: null,
@@ -63,8 +64,27 @@ class Scatterplot extends React.Component {
componentDidMount() {
const { svg } = setupScatterplot(width, height, margin);
let scales;
/* if we've already got the data, user clicked back and forth between tabs, so render the scatterplot */
if (
this.props.expression &&
this.props.expression.data &&
this.props.scatterplotXXaccessor &&
this.props.scatterplotYYaccessor
) {
scales = this.setupScales(
this.props.expression,
this.props.scatterplotXXaccessor,
this.props.scatterplotYYaccessor
);
this.drawAxesSVG(scales.xScale, scales.yScale, svg);
}
this.setState({
svg
svg,
xScale: scales ? scales.xScale : null,
yScale: scales ? scales.yScale : null
});
const camera = _camera(this.reglCanvas, { scale: true, rotate: false });
@@ -104,21 +124,36 @@ class Scatterplot extends React.Component {
});
}
componentWillReceiveProps(nextProps) {
this.maybeSetupScalesAndDrawAxes(nextProps);
if (
nextProps.expression &&
nextProps.expression.data &&
nextProps.scatterplotXXaccessor &&
nextProps.scatterplotYYaccessor
) {
const scales = this.setupScales(
nextProps.expression,
nextProps.scatterplotXXaccessor,
nextProps.scatterplotYYaccessor
);
this.setState(scales);
}
}
componentDidUpdate(prevProps) {
if (
this.state.svg &&
this.state.xScale &&
this.state.yScale &&
this.props.scatterplotXXaccessor &&
this.props.scatterplotYYaccessor &&
(this.props.scatterplotXXaccessor !== prevProps.scatterplotXXaccessor || // was CLU now FTH1 etc
this.props.scatterplotYYaccessor !== prevProps.scatterplotYYaccessor)
this.props.scatterplotYYaccessor !== prevProps.scatterplotYYaccessor || // was CLU now FTH1 etc
!this.axes) // clicked off the tab and back again, rerender
) {
this.drawAxesSVG(this.state.xScale, this.state.yScale);
this.drawAxesSVG(this.state.xScale, this.state.yScale, this.state.svg);
}
if (
this.props.metadata &&
this.state.regl &&
this.state.pointBuffer &&
this.state.colorBuffer &&
@@ -179,47 +214,32 @@ class Scatterplot extends React.Component {
this.count = cellCount;
}
}
maybeSetupScalesAndDrawAxes(nextProps) {
if (
nextProps.expression &&
nextProps.expression.data &&
nextProps.scatterplotXXaccessor &&
nextProps.scatterplotYYaccessor
) {
const xScale = d3
.scaleLinear()
.domain(
d3.extent(nextProps.expression.data.cells, (cell, i) => {
return cell.e[
nextProps.expression.data.genes.indexOf(
nextProps.scatterplotXXaccessor
)
];
})
)
.range([0, width]);
setupScales(expression, scatterplotXXaccessor, scatterplotYYaccessor) {
const xScale = d3
.scaleLinear()
.domain(
d3.extent(expression.data.cells, (cell, i) => {
return cell.e[expression.data.genes.indexOf(scatterplotXXaccessor)];
})
)
.range([0, width]);
const yScale = d3
.scaleLinear()
.domain(
d3.extent(nextProps.expression.data.cells, cell => {
return cell.e[
nextProps.expression.data.genes.indexOf(
nextProps.scatterplotYYaccessor
)
];
})
)
.range([height, 0]);
const yScale = d3
.scaleLinear()
.domain(
d3.extent(expression.data.cells, cell => {
return cell.e[expression.data.genes.indexOf(scatterplotYYaccessor)];
})
)
.range([height, 0]);
this.setState({
xScale,
yScale
});
}
return {
xScale,
yScale
};
}
drawAxesSVG(xScale, yScale) {
this.state.svg.selectAll("*").remove();
drawAxesSVG(xScale, yScale, svg) {
svg.selectAll("*").remove();
// the axes are much cleaner and easier now. No need to rotate and orient the axis, just call axisBottom, axisLeft etc.
var xAxis = d3.axisBottom().scale(xScale);
@@ -227,28 +247,28 @@ class Scatterplot extends React.Component {
var yAxis = d3.axisLeft().scale(yScale);
// adding axes is also simpler now, just translate x-axis to (0,height) and it's alread defined to be a bottom axis.
this.state.svg
svg
.append("g")
.attr("transform", "translate(0," + height + ")")
.attr("class", "x axis")
.call(xAxis);
// y-axis is translated to (0,0)
this.state.svg
svg
.append("g")
.attr("transform", "translate(0,0)")
.attr("class", "y axis")
.call(yAxis);
// adding label. For x-axis, it's at (10, 10), and for y-axis at (width, height-10).
this.state.svg
svg
.append("text")
.attr("x", 10)
.attr("y", 10)
.attr("class", "label")
.text(this.props.scatterplotYYaccessor);
this.state.svg
svg
.append("text")
.attr("x", width)
.attr("y", height - 10)