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https://github.com/chanzuckerberg/cellxgene.git
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diff exp component based on cell selections
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@@ -4,11 +4,13 @@ import { connect } from "react-redux";
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import * as globals from "../../globals";
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import styles from "./expression.css";
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import SectionHeader from "../framework/sectionHeader"
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import actions from "../../actions";
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@connect((state) => {
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return {
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expression: state.expression.data
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expression: state.expression.data,
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currentCellSelection: state.controls.currentCellSelection,
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differential: state.differential
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}
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})
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class Expression extends React.Component {
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@@ -26,11 +28,71 @@ class Expression extends React.Component {
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});
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}
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}
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set1() {
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const set = [];
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_.each(this.props.currentCellSelection, (cell) => {
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if (cell["__selected__"]) {
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set.push(cell.CellName)
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}
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})
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this.props.dispatch({
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type: "store current cell selection as differential set 1",
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data: set
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})
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}
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set2() {
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const set = [];
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_.each(this.props.currentCellSelection, (cell) => {
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if (cell["__selected__"]) {
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set.push(cell.CellName)
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}
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})
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this.props.dispatch({
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type: "store current cell selection as differential set 2",
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data: set
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})
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}
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computeDiffExp() {
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this.props.dispatch(
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actions.requestDifferentialExpression(
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this.props.differential.celllist1,
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this.props.differential.celllist2
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)
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)
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}
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render () {
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if (!this.props.expression) return null
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console.log('expression render sees', this.props.differential)
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return (
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<div style={{marginTop: 50}}>
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<SectionHeader text="Expression"/>
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<SectionHeader text="Differential Expression"/>
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<div style={{marginBottom: 20}}>
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<button onClick={this.set1.bind(this)}>
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{
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this.props.differential.celllist1 ?
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this.props.differential.celllist1.length + " cells selected" :
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"Store current cell selection as 'set 1'"
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}
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</button>
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<button onClick={this.set2.bind(this)}>
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{
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this.props.differential.celllist2 ?
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this.props.differential.celllist2.length + " cells selected" :
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"Store current cell selection as 'set 2'"
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}
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</button>
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<button onClick={this.computeDiffExp.bind(this)}>
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Compute differential expression
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</button>
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Gene count:
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<input placeholder={"Default is 5"}/>
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</div>
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<SectionHeader text="Color by expression"/>
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{
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_.map(this.props.expression.genes, (gene) => {
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return (
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