user defined gene

client/src/actions/index.js

@@ -204,6 +204,24 @@ const requestGeneExpressionCountsPOST = genes => async (dispatch, getState) => {
   }
 };
 
+const requestUserDefinedGene = gene => async dispatch => {
+  dispatch({ type: "request user defined gene started" });
+  try {
+    const data = await dispatch(requestGeneExpressionCountsPOST([gene]));
+
+    /* then send the success case action through */
+    return dispatch({
+      type: "request user defined gene success",
+      data
+    });
+  } catch (error) {
+    return dispatch({
+      type: "request user defined gene error",
+      error
+    });
+  }
+};
+
 const requestDifferentialExpression = (set1, set2, num_genes = 10) => async (
   dispatch,
   getState
@@ -244,7 +262,7 @@ const requestDifferentialExpression = (set1, set2, num_genes = 10) => async (
     Kick off secondary action to fetch all of the expression data for the
     topN expressed genes.
     */
-    dispatch(requestGeneExpressionCountsPOST(topNGenes));
+    await dispatch(requestGeneExpressionCountsPOST(topNGenes));
 
     /* then send the success case action through */
     return dispatch({
@@ -265,5 +283,6 @@ export default {
   requestSingleGeneExpressionCountsForColoringPOST,
   requestGeneExpressionCountsPOST,
   requestDifferentialExpression,
+  requestUserDefinedGene,
   doInitialDataLoad
 };

client/src/components/geneExpression/index.js

@@ -54,7 +54,7 @@ class GeneExpression extends React.Component {
     } else if (!_.find(world.varAnnotations, { name: gene })) {
       console.log("That doesn't appear to be a valid gene name.");
     } else {
-      dispatch(actions.requestGeneExpressionCountsPOST([gene]));
+      dispatch(actions.requestUserDefinedGene(gene));
       dispatch({
         type: "user defined gene",
         data: gene

client/src/reducers/controls.js

@@ -203,8 +203,7 @@ const Controls = (
       };
     }
     case "expression load success": {
-      console.log("expression load success", action);
-      const { world, universe, crossfilter, dimensionMap } = state;
+      const { world, universe } = state;
       let universeVarDataCache = universe.varDataCache;
       let worldVarDataCache = world.varDataCache;
       _.forEach(action.expressionData, (val, key) => {
@@ -218,16 +217,6 @@ const Controls = (
         }
       });
 
-      _.forEach(action.expressionData, (val, key) => {
-        dimensionMap[key] = World.createVarDimension(
-          /* "__var__" + */
-          world,
-          worldVarDataCache,
-          crossfilter,
-          key
-        );
-      });
-
       return {
         ...state,
         universe: {
@@ -240,17 +229,48 @@ const Controls = (
         }
       };
     }
+    case "request user defined gene success": {
+      const { world, crossfilter, dimensionMap, userDefinedGenes } = state;
+      const worldVarDataCache = world.varDataCache;
+      const _userDefinedGenes = userDefinedGenes.slice();
+      const gene = action.data.genes[0];
+
+      dimensionMap[userDefinedDimensionName(gene)] = World.createVarDimension(
+        /* "__var__" + */
+        world,
+        worldVarDataCache,
+        crossfilter,
+        gene
+      );
+
+      return {
+        ...state,
+        dimensionMap,
+        userDefinedGenes: _userDefinedGenes
+      };
+    }
     case "request differential expression success": {
-      console.log("request diff success", action);
-      const { world } = state;
+      const { world, crossfilter, dimensionMap } = state;
+      const worldVarDataCache = world.varDataCache;
       const _diffexpGenes = [];
 
       action.data.forEach(d => {
         _diffexpGenes.push(world.varAnnotations[d[0]].name);
       });
 
+      _.forEach(_diffexpGenes, gene => {
+        dimensionMap[diffexpDimensionName(gene)] = World.createVarDimension(
+          /* "__var__" + */
+          world,
+          worldVarDataCache,
+          crossfilter,
+          gene
+        );
+      });
+
       return {
         ...state,
+        dimensionMap,
         diffexpGenes: _diffexpGenes
       };
     }