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update compat workflow to match latest deps (#2335)

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* update compat workflow to match latest deps

* attempt to debug

* attempt to debug

* remove debugging code

* typo
This commit is contained in:
Bruce Martin
2021-07-26 14:32:46 -07:00
committed by GitHub
parent 934cc5c69b
commit a1c46170b9
1 changed files with 2 additions and 4 deletions
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.github/workflows/compatibility_tests.yml
+2 -4
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@@ -28,8 +28,8 @@ jobs:
continue-on-error: true continue-on-error: true
strategy: strategy:
matrix: matrix:
python-version: [3.6, 3.7] # As of Oct 2020 Anndata is not compatible with 3.8 python-version: [3.6, 3.7, 3.8]
anndata-version: [0.7.0, 0.7.1, 0.7.2, 0.7.3, 0.7.4, 0.7.5] anndata-version: [0.7.6]
test-suite: [smoke-test, smoke-test-annotations] test-suite: [smoke-test, smoke-test-annotations]
steps: steps:
- uses: actions/checkout@v2 - uses: actions/checkout@v2
@@ -47,8 +47,6 @@ jobs:
make pydist install-dist make pydist install-dist
# 3. install anndata # 3. install anndata
pip install anndata==${{ matrix.anndata-version }} pip install anndata==${{ matrix.anndata-version }}
# workaround for anndata 0.6.22.post1 bug
[[ "0.6.22.post1" = "${{ matrix.anndata-version }}" ]] && pip install h5py==2.9.0 || true
- name: Tests - name: Tests
run: make unit-test ${{ matrix.test-suite }} run: make unit-test ${{ matrix.test-suite }}