mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-15 12:47:56 +08:00
Bug reading the config file. (#1857)
The config file had a bug where it expected both a "server" and "dataset" section. If one didn't exist, then it would raise an exception. It should use the default server config or the defaul dataset config in those cases. Added a test case that would have caught this.
This commit is contained in:
@@ -95,8 +95,10 @@ class AppConfig(object):
|
||||
with open(config_file) as fyaml:
|
||||
config = yaml.load(fyaml, Loader=yaml.FullLoader)
|
||||
|
||||
self.server_config.update_from_config(config["server"], "server")
|
||||
self.default_dataset_config.update_from_config(config["dataset"], "dataset")
|
||||
if config.get("server"):
|
||||
self.server_config.update_from_config(config["server"], "server")
|
||||
if config.get("dataset"):
|
||||
self.default_dataset_config.update_from_config(config["dataset"], "dataset")
|
||||
|
||||
per_dataset_config = config.get("per_dataset_config", {})
|
||||
for key, dataroot_config in per_dataset_config.items():
|
||||
|
||||
@@ -206,3 +206,44 @@ class AppConfigTest(unittest.TestCase):
|
||||
|
||||
# test config from specialization
|
||||
self.assertTrue(test_config.user_annotations__enable)
|
||||
|
||||
def test_configfile_no_dataset_section(self):
|
||||
# test a config file without a dataset section
|
||||
|
||||
with tempfile.TemporaryDirectory() as tempdir:
|
||||
configfile = os.path.join(tempdir, "config.yaml")
|
||||
with open(configfile, "w") as fconfig:
|
||||
config = """
|
||||
server:
|
||||
multi_dataset:
|
||||
dataroot: test_dataroot
|
||||
|
||||
"""
|
||||
fconfig.write(config)
|
||||
|
||||
app_config = AppConfig()
|
||||
app_config.update_from_config_file(configfile)
|
||||
server_changes = app_config.server_config.changes_from_default()
|
||||
dataset_changes = app_config.default_dataset_config.changes_from_default()
|
||||
self.assertEqual(server_changes, [("multi_dataset__dataroot", "test_dataroot", None)])
|
||||
self.assertEqual(dataset_changes, [])
|
||||
|
||||
def test_configfile_no_server_section(self):
|
||||
# test a config file without a dataset section
|
||||
|
||||
with tempfile.TemporaryDirectory() as tempdir:
|
||||
configfile = os.path.join(tempdir, "config.yaml")
|
||||
with open(configfile, "w") as fconfig:
|
||||
config = """
|
||||
dataset:
|
||||
user_annotations:
|
||||
enable: false
|
||||
"""
|
||||
fconfig.write(config)
|
||||
|
||||
app_config = AppConfig()
|
||||
app_config.update_from_config_file(configfile)
|
||||
server_changes = app_config.server_config.changes_from_default()
|
||||
dataset_changes = app_config.default_dataset_config.changes_from_default()
|
||||
self.assertEqual(server_changes, [])
|
||||
self.assertEqual(dataset_changes, [("user_annotations__enable", False, True)])
|
||||
|
||||
Reference in New Issue
Block a user