mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-26 08:18:12 +08:00
@@ -0,0 +1,5 @@
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from .mlflow_model_fixture import FakeModel
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def _load_pyfunc(data_path):
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return FakeModel()
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+1
-10
@@ -1,20 +1,11 @@
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import shutil
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from tempfile import TemporaryDirectory, mkstemp
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import mlflow
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def write_model(model) -> str:
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with TemporaryDirectory() as mlflow_model_dir:
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mlflow.pyfunc.save_model(mlflow_model_dir, python_model=model)
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return shutil.make_archive(mkstemp()[1], "zip", mlflow_model_dir)
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class FakeModel(mlflow.pyfunc.PythonModel):
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def __init__(self, input_to_output: dict = {}):
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self.input_to_output = input_to_output
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def predict(self, context, model_input) -> None:
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def predict(self, model_input) -> None:
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# this stdout output is useful for validating the input in a test, noting that this model will be invoked in a
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# subprocess, so stdout is one means of communicating information back to the test code
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print(f"__MODEL_INPUT__={model_input.iloc[0][0]}")
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@@ -1,10 +1,22 @@
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import os
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import shutil
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import unittest
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from tempfile import mkstemp
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from tempfile import mkstemp, TemporaryDirectory
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import mlflow
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from click.testing import CliRunner
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from server.cli.annotate import annotate
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from test.unit.cli.mlflow_model_fixture import FakeModel, write_model
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from test.unit.cli.fixtures.mlflow_model_fixture import FakeModel
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def write_model(model) -> str:
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with TemporaryDirectory() as mlflow_model_dir:
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fixtures_path = os.path.join(os.path.dirname(__file__), 'fixtures')
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mlflow.pyfunc.save_model(mlflow_model_dir,
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loader_module='fixtures',
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code_path=[fixtures_path])
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return shutil.make_archive(mkstemp()[1], "zip", mlflow_model_dir)
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class TestCliAnnotate(unittest.TestCase):
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@@ -29,8 +41,7 @@ class TestCliAnnotate(unittest.TestCase):
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"""
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_, query_dataset_file_path = mkstemp()
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model = FakeModel()
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model_file_path = write_model(model)
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model_file_path = write_model(FakeModel())
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result = CliRunner().invoke(
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annotate,
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