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Collect all env vars in one, easy-to-find place (#1149)

Browse Source 
* Collect all env vars in one, easy-to-find place

Past state:
* Default environement variables were stored in both client/package.json
and client/__tests__/e2e/config.js
* Constants that should have been linked--like the cellxgene server port
during testing--were repeated.

With this commit:
* All environment variables are parameterized
* All environment variables are packaged in default env files

* Move npm scripts to client Makefile

* Respond to feedback from @seve and @bkmartinjr
This commit is contained in:
Matt Weiden
2020-02-12 12:50:48 -08:00
committed by GitHub
parent 5340a5f951
commit ac13b31e13
16 changed files with 777 additions and 287 deletions
Download Patch File Download Diff File Expand all files Collapse all files
client/Makefile
+57 -1
View File
@@ -1,3 +1,9 @@
include ../common.mk
DATASET := $(if $(DATASET),$(DATASET),../example-dataset/pbmc3k.h5ad)
# Packaging
.PHONY: clean
clean:
rm -rf node_modules
@@ -14,7 +20,57 @@ install:
build:
npm run build
# Development convenience methods
.PHONY: server-requirements
server-requirements:
virtualenv -p python3 ../venv
source ../venv/bin/activate && \
pip install -r ../server/requirements-dev.txt && \
yes | pip uninstall cellxgene || true && \
pip install -e ..
.PHONY: start-frontend
start-frontend:
node server/development.js
.PHONY: start-server
start-server:
cellxgene launch -p $(CXG_SERVER_PORT) $(CXG_OPTIONS) $(DATASET)
.PHONY: backend-dev
backend-dev: server-requirements
source ../venv/bin/activate && $(MAKE) start-server
.PHONY: backend-dev-anno
backend-dev-anno: server-requirements
CXG_OPTIONS='--experimental-annotations' $(MAKE) backend-dev
.PHONY: backend-dev-anno-ontology
backend-dev-anno-ontology: server-requirements
CXG_OPTIONS='--experimental-annotations --experimental-annotations-ontology' \
$(MAKE) backend-dev
.PHONY: e2e
e2e:
node node_modules/jest/bin/jest.js \
--verbose false \
--config __tests__/e2e/e2eJestConfig.json \
e2e/e2e.test.js
.PHONY: test
test:
node node_modules/jest/bin/jest.js
.PHONY: smoke-test
smoke-test:
start_server_and_test '$(MAKE) start-server' $(CXG_SERVER_PORT) '$(MAKE) e2e'
.PHONY: unit-test
unit-test:
node node_modules/jest/bin/jest.js --testPathIgnorePatterns e2e
# pass remaining commands through to npm run
%:
npm run $(*)
client/__tests__/e2e/config.js
+2 -2
View File
@@ -1,5 +1,5 @@
export const jest_env = process.env.JEST_ENV || "dev";
export const appPort = process.env.JEST_CXG_PORT || 3000;
export const jest_env = process.env.JEST_ENV;
export const appPort = process.env.CXG_SERVER_PORT;
export const appUrlBase = `http://localhost:${appPort}`;
export const DEV = jest_env === "dev";
export const DEBUG = jest_env === "debug";
client/configuration/webpack/webpack.config.dev.js
+3
View File
@@ -88,6 +88,9 @@ module.exports = {
new webpack.NoEmitOnErrorsPlugin(),
new webpack.DefinePlugin({
__REACT_DEVTOOLS_GLOBAL_HOOK__: "({ isDisabled: true })"
}),
new webpack.DefinePlugin({
"process.env.CXG_SERVER_PORT": JSON.stringify(process.env.CXG_SERVER_PORT),
})
]
};
client/package-lock.json
Generated
+482 -195
View File
@@ -6564,6 +6564,11 @@
"integrity": "sha512-7evsyfH1cLOCdAzZAd43Cic04yKydNx0cF+7tiA19p1XnLLPU4dpCQOqpjqwokFe//vS0QqfqqjCS2JkiIs0cA==",
"dev": true
},
"after": {
"version": "0.8.1",
"resolved": "https://registry.npmjs.org/after/-/after-0.8.1.tgz",
"integrity": "sha1-q11PuIP1loFtNRX495HAr0ht1ic="
},
"agent-base": {
"version": "5.1.1",
"resolved": "https://registry.npmjs.org/agent-base/-/agent-base-5.1.1.tgz",
@@ -6804,6 +6809,11 @@
}
}
},
"arraybuffer.slice": {
"version": "0.0.6",
"resolved": "https://registry.npmjs.org/arraybuffer.slice/-/arraybuffer.slice-0.0.6.tgz",
"integrity": "sha1-8zshWfBTKj8xB6JywMz70a0peco="
},
"asn1": {
"version": "0.2.4",
"resolved": "https://registry.npmjs.org/asn1/-/asn1-0.2.4.tgz",
@@ -6875,6 +6885,11 @@
"integrity": "sha512-+Ryf6g3BKoRc7jfp7ad8tM4TtMiaWvbF/1/sQcZPkkS7ag3D5nMBCe2UfOTONtAkaG0tO0ij3C5Lwmf1EiyjHg==",
"dev": true
},
"async": {
"version": "0.2.10",
"resolved": "https://registry.npmjs.org/async/-/async-0.2.10.tgz",
"integrity": "sha1-trvgsGdLnXGXCMo43owjfLUmw9E="
},
"async-each": {
"version": "1.0.3",
"resolved": "https://registry.npmjs.org/async-each/-/async-each-1.0.3.tgz",
@@ -6899,6 +6914,11 @@
"integrity": "sha512-Wm6ukoaOGJi/73p/cl2GvLjTI5JM1k/O14isD73YML8StrH/7/lRFgmg8nICZgD3bZZvjwCGxtMOD3wWNAu8cg==",
"dev": true
},
"aws-sign": {
"version": "0.2.0",
"resolved": "https://registry.npmjs.org/aws-sign/-/aws-sign-0.2.0.tgz",
"integrity": "sha1-xVAThWyBlOyFSgy+yQqrWgTOOsU="
},
"aws-sign2": {
"version": "0.7.0",
"resolved": "https://registry.npmjs.org/aws-sign2/-/aws-sign2-0.7.0.tgz",
@@ -7114,6 +7134,14 @@
"@babel/plugin-transform-modules-commonjs": "^7.2.0"
}
},
"backoff": {
"version": "2.5.0",
"resolved": "https://registry.npmjs.org/backoff/-/backoff-2.5.0.tgz",
"integrity": "sha1-9hbtqdPktmuMp/ynn2lXIsX44m8=",
"requires": {
"precond": "0.2"
}
},
"balanced-match": {
"version": "1.0.0",
"resolved": "https://registry.npmjs.org/balanced-match/-/balanced-match-1.0.0.tgz",
@@ -7175,6 +7203,11 @@
}
}
},
"base64-arraybuffer": {
"version": "0.1.2",
"resolved": "https://registry.npmjs.org/base64-arraybuffer/-/base64-arraybuffer-0.1.2.tgz",
"integrity": "sha1-R030qfLaJOBd8xWMOx2zw81GoVQ="
},
"base64-js": {
"version": "1.3.1",
"resolved": "https://registry.npmjs.org/base64-js/-/base64-js-1.3.1.tgz",
@@ -7190,6 +7223,14 @@
"tweetnacl": "^0.14.3"
}
},
"better-assert": {
"version": "1.0.2",
"resolved": "https://registry.npmjs.org/better-assert/-/better-assert-1.0.2.tgz",
"integrity": "sha1-QIZrnhueC1W0gYlDEeaPr/rrxSI=",
"requires": {
"callsite": "1.0.0"
}
},
"big.js": {
"version": "3.2.0",
"resolved": "https://registry.npmjs.org/big.js/-/big.js-3.2.0.tgz",
@@ -7202,6 +7243,11 @@
"integrity": "sha512-Un7MIEDdUC5gNpcGDV97op1Ywk748MpHcFTHoYs6qnj1Z3j7I53VG3nwZhKzoBZmbdRNnb6WRdFlwl7tSDuZGw==",
"dev": true
},
"blob": {
"version": "0.0.2",
"resolved": "https://registry.npmjs.org/blob/-/blob-0.0.2.tgz",
"integrity": "sha1-uJVivWmUr5W6HoEhVVNjM6ojzyQ="
},
"bluebird": {
"version": "3.7.1",
"resolved": "https://registry.npmjs.org/bluebird/-/bluebird-3.7.1.tgz",
@@ -7255,6 +7301,14 @@
"integrity": "sha1-aN/1++YMUes3cl6p4+0xDcwed24=",
"dev": true
},
"boom": {
"version": "0.3.8",
"resolved": "https://registry.npmjs.org/boom/-/boom-0.3.8.tgz",
"integrity": "sha1-yM2wQUNZEnQWKMBE7Mcy0dF8Ceo=",
"requires": {
"hoek": "0.7.x"
}
},
"boxen": {
"version": "1.3.0",
"resolved": "https://registry.npmjs.org/boxen/-/boxen-1.3.0.tgz",
@@ -7575,6 +7629,11 @@
"unset-value": "^1.0.0"
}
},
"callsite": {
"version": "1.0.0",
"resolved": "https://registry.npmjs.org/callsite/-/callsite-1.0.0.tgz",
"integrity": "sha1-KAOY5dZkvXQDi28JBRU+borxvCA="
},
"callsites": {
"version": "3.1.0",
"resolved": "https://registry.npmjs.org/callsites/-/callsites-3.1.0.tgz",
@@ -7692,12 +7751,6 @@
"integrity": "sha512-mT8iDcrh03qDGRRmoA2hmBJnxpllMR+0/0qlzjqZES6NdiWDcZkCNAk4rPFZ9Q85r27unkiNNg8ZOiwZXBHwcA==",
"dev": true
},
"check-more-types": {
"version": "2.24.0",
"resolved": "https://registry.npmjs.org/check-more-types/-/check-more-types-2.24.0.tgz",
"integrity": "sha1-FCD/sQ/URNz8ebQ4kbv//TKoRgA=",
"dev": true
},
"chokidar": {
"version": "2.1.8",
"resolved": "https://registry.npmjs.org/chokidar/-/chokidar-2.1.8.tgz",
@@ -7823,6 +7876,28 @@
"integrity": "sha1-/xnt6Kml5XkyQUewwR8PvLq+1jk=",
"dev": true
},
"client": {
"version": "0.0.1",
"resolved": "https://registry.npmjs.org/client/-/client-0.0.1.tgz",
"integrity": "sha1-ZTAeRW3G5fIIphGIY2I0ckK3wrg=",
"requires": {
"backoff": "^2.4.0",
"cookie": "^0.1.2",
"getenv": "~0.3.0",
"q": "~0.9.7",
"restler": "~2.0.1",
"socket.io-client": "~1.0.6",
"underscore": "^1.6.0",
"winston": "^0.7.3"
},
"dependencies": {
"cookie": {
"version": "0.1.5",
"resolved": "https://registry.npmjs.org/cookie/-/cookie-0.1.5.tgz",
"integrity": "sha1-armUiksa4hlSzSWIUwpHItQETXw="
}
}
},
"cliui": {
"version": "5.0.0",
"resolved": "https://registry.npmjs.org/cliui/-/cliui-5.0.0.tgz",
@@ -7923,6 +7998,11 @@
"integrity": "sha1-p9BVi9icQveV3UIyj3QIMcpTvCU=",
"dev": true
},
"colors": {
"version": "0.6.2",
"resolved": "https://registry.npmjs.org/colors/-/colors-0.6.2.tgz",
"integrity": "sha1-JCP+ZnisDF2uiFLl0OW+CMmXq8w="
},
"combined-stream": {
"version": "1.0.8",
"resolved": "https://registry.npmjs.org/combined-stream/-/combined-stream-1.0.8.tgz",
@@ -7943,12 +8023,22 @@
"integrity": "sha1-3dgA2gxmEnOTzKWVDqloo6rxJTs=",
"dev": true
},
"component-bind": {
"version": "1.0.0",
"resolved": "https://registry.npmjs.org/component-bind/-/component-bind-1.0.0.tgz",
"integrity": "sha1-AMYIq33Nk4l8AAllGx06jh5zu9E="
},
"component-emitter": {
"version": "1.3.0",
"resolved": "https://registry.npmjs.org/component-emitter/-/component-emitter-1.3.0.tgz",
"integrity": "sha512-Rd3se6QB+sO1TwqZjscQrurpEPIfO0/yYnSin6Q/rD3mOutHvUrCAhJub3r90uNb+SESBuE0QYoB90YdfatsRg==",
"dev": true
},
"component-inherit": {
"version": "0.0.3",
"resolved": "https://registry.npmjs.org/component-inherit/-/component-inherit-0.0.3.tgz",
"integrity": "sha1-ZF/ErfWLcrZJ1crmUTVhnbJv8UM="
},
"concat-map": {
"version": "0.0.1",
"resolved": "https://registry.npmjs.org/concat-map/-/concat-map-0.0.1.tgz",
@@ -8041,6 +8131,11 @@
"integrity": "sha512-+Hp8fLp57wnUSt0tY0tHEXh4voZRDnoIrZPqlo3DPiI4y9lwg/jqx+1Om94/W6ZaPDOUbnjOt/99w66zk+l1Xg==",
"dev": true
},
"cookie-jar": {
"version": "0.2.0",
"resolved": "https://registry.npmjs.org/cookie-jar/-/cookie-jar-0.2.0.tgz",
"integrity": "sha1-ZOzAasl423leS1KQy+SLo3gUAPo="
},
"cookie-signature": {
"version": "1.0.6",
"resolved": "https://registry.npmjs.org/cookie-signature/-/cookie-signature-1.0.6.tgz",
@@ -8230,6 +8325,14 @@
"which": "^1.2.9"
}
},
"cryptiles": {
"version": "0.1.3",
"resolved": "https://registry.npmjs.org/cryptiles/-/cryptiles-0.1.3.tgz",
"integrity": "sha1-GlVnNPBtJLo0hirpy55wmjr7/xw=",
"requires": {
"boom": "0.3.x"
}
},
"crypto-browserify": {
"version": "3.12.0",
"resolved": "https://registry.npmjs.org/crypto-browserify/-/crypto-browserify-3.12.0.tgz",
@@ -8397,6 +8500,11 @@
"fs-exists-sync": "^0.1.0"
}
},
"cycle": {
"version": "1.0.3",
"resolved": "https://registry.npmjs.org/cycle/-/cycle-1.0.3.tgz",
"integrity": "sha1-IegLK+hYD5i0aPN5QwZisEbDStI="
},
"cyclist": {
"version": "1.0.1",
"resolved": "https://registry.npmjs.org/cyclist/-/cyclist-1.0.1.tgz",
@@ -9030,12 +9138,6 @@
"is-obj": "^1.0.0"
}
},
"duplexer": {
"version": "0.1.1",
"resolved": "https://registry.npmjs.org/duplexer/-/duplexer-0.1.1.tgz",
"integrity": "sha1-rOb/gIwc5mtX0ev5eXessCM0z8E=",
"dev": true
},
"duplexer3": {
"version": "0.1.4",
"resolved": "https://registry.npmjs.org/duplexer3/-/duplexer3-0.1.4.tgz",
@@ -9091,6 +9193,13 @@
"minimalistic-crypto-utils": "^1.0.0"
}
},
"emitter": {
"version": "http://github.com/component/emitter/archive/1.0.1.tar.gz",
"integrity": "sha512-k3Da+QreMb9waaGCHNAHox5QqxnZEYlQmvIVYwQibrI6OpIRyIIyFGgDV5dXRLr1AJ32JLqEh0VxQEq20dFskw==",
"requires": {
"indexof": "0.0.1"
}
},
"emoji-regex": {
"version": "7.0.3",
"resolved": "https://registry.npmjs.org/emoji-regex/-/emoji-regex-7.0.3.tgz",
@@ -9118,6 +9227,73 @@
"once": "^1.4.0"
}
},
"engine.io-client": {
"version": "1.3.1",
"resolved": "https://registry.npmjs.org/engine.io-client/-/engine.io-client-1.3.1.tgz",
"integrity": "sha1-HFpl1cWvbQS0TCLD282Vw57RyYk=",
"requires": {
"component-emitter": "1.1.2",
"component-inherit": "0.0.3",
"debug": "0.7.4",
"engine.io-parser": "1.0.6",
"has-cors": "1.0.3",
"indexof": "0.0.1",
"parsejson": "0.0.1",
"parseqs": "0.0.2",
"parseuri": "0.0.2",
"ws": "0.4.31",
"xmlhttprequest": "https://github.com/LearnBoost/node-XMLHttpRequest/archive/0f36d0b5ebc03d85f860d42a64ae9791e1daa433.tar.gz"
},
"dependencies": {
"commander": {
"version": "0.6.1",
"resolved": "https://registry.npmjs.org/commander/-/commander-0.6.1.tgz",
"integrity": "sha1-+mihT2qUXVTbvlDYzbMyDp47GgY="
},
"component-emitter": {
"version": "1.1.2",
"resolved": "https://registry.npmjs.org/component-emitter/-/component-emitter-1.1.2.tgz",
"integrity": "sha1-KWWU8nU9qmOZbSrwjRWpURbJrsM="
},
"debug": {
"version": "0.7.4",
"resolved": "https://registry.npmjs.org/debug/-/debug-0.7.4.tgz",
"integrity": "sha1-BuHqgILCyxTjmAbiLi9vdX+Srzk="
},
"nan": {
"version": "0.3.2",
"resolved": "https://registry.npmjs.org/nan/-/nan-0.3.2.tgz",
"integrity": "sha1-DfGTXKsVNpB17xYK0olBB6oU3C0="
},
"ws": {
"version": "0.4.31",
"resolved": "https://registry.npmjs.org/ws/-/ws-0.4.31.tgz",
"integrity": "sha1-WkhJ56nM0e1aga60hHyf7fMSKSc=",
"requires": {
"commander": "~0.6.1",
"nan": "~0.3.0",
"options": ">=0.0.5",
"tinycolor": "0.x"
}
},
"xmlhttprequest": {
"version": "https://github.com/LearnBoost/node-XMLHttpRequest/archive/0f36d0b5ebc03d85f860d42a64ae9791e1daa433.tar.gz",
"integrity": "sha512-TVSZwoeUQ7OKhb8jnQdSxGFz+lm4MGWmhG0deeYg85VQT74x5LcSrKeXHE0ZIzEycgqQ5mF8r8e1AykA7TpNAQ=="
}
}
},
"engine.io-parser": {
"version": "1.0.6",
"resolved": "https://registry.npmjs.org/engine.io-parser/-/engine.io-parser-1.0.6.tgz",
"integrity": "sha1-04gTFDpBHLO5FBMqsFv5nm96JI4=",
"requires": {
"after": "0.8.1",
"arraybuffer.slice": "0.0.6",
"base64-arraybuffer": "0.1.2",
"blob": "0.0.2",
"utf8": "2.0.0"
}
},
"enhanced-resolve": {
"version": "4.1.1",
"resolved": "https://registry.npmjs.org/enhanced-resolve/-/enhanced-resolve-4.1.1.tgz",
@@ -10034,21 +10210,6 @@
"integrity": "sha1-Qa4u62XvpiJorr/qg6x9eSmbCIc=",
"dev": true
},
"event-stream": {
"version": "3.3.4",
"resolved": "https://registry.npmjs.org/event-stream/-/event-stream-3.3.4.tgz",
"integrity": "sha1-SrTJoPWlTbkzi0w02Gv86PSzVXE=",
"dev": true,
"requires": {
"duplexer": "~0.1.1",
"from": "~0",
"map-stream": "~0.1.0",
"pause-stream": "0.0.11",
"split": "0.3",
"stream-combiner": "~0.0.4",
"through": "~2.3.1"
}
},
"events": {
"version": "3.0.0",
"resolved": "https://registry.npmjs.org/events/-/events-3.0.0.tgz",
@@ -10920,6 +11081,11 @@
"integrity": "sha1-lpGEQOMEGnpBT4xS48V06zw+HgU=",
"dev": true
},
"eyes": {
"version": "0.1.8",
"resolved": "https://registry.npmjs.org/eyes/-/eyes-0.1.8.tgz",
"integrity": "sha1-Ys8SAjTGg3hdkCNIqADvPgzCC8A="
},
"fast-deep-equal": {
"version": "2.0.1",
"resolved": "https://registry.npmjs.org/fast-deep-equal/-/fast-deep-equal-2.0.1.tgz",
@@ -11362,12 +11528,6 @@
"integrity": "sha1-PYyt2Q2XZWn6g1qx+OSyOhBWBac=",
"dev": true
},
"from": {
"version": "0.1.7",
"resolved": "https://registry.npmjs.org/from/-/from-0.1.7.tgz",
"integrity": "sha1-g8YK/Fi5xWmXAH7Rp2izqzA6RP4=",
"dev": true
},
"from2": {
"version": "2.3.0",
"resolved": "https://registry.npmjs.org/from2/-/from2-2.3.0.tgz",
@@ -12015,6 +12175,11 @@
"integrity": "sha1-3BXKHGcjh8p2vTesCjlbogQqLCg=",
"dev": true
},
"getenv": {
"version": "0.3.0",
"resolved": "https://registry.npmjs.org/getenv/-/getenv-0.3.0.tgz",
"integrity": "sha1-se8/l+ncVUZ4KFmyIrVlmgx47qo="
},
"getpass": {
"version": "0.1.7",
"resolved": "https://registry.npmjs.org/getpass/-/getpass-0.1.7.tgz",
@@ -12074,6 +12239,10 @@
}
}
},
"global": {
"version": "https://github.com/component/global/archive/v2.0.1.tar.gz",
"integrity": "sha512-O91OcV/NbdmQJPHaRu2ekSP7bqFRLWgqSwaJvqHPZHUwmHBagQYTOra29+LnzzG3lZkXH1ANzHzfCxtAPM9HMA=="
},
"global-dirs": {
"version": "0.1.1",
"resolved": "https://registry.npmjs.org/global-dirs/-/global-dirs-0.1.1.tgz",
@@ -12216,6 +12385,29 @@
"function-bind": "^1.1.1"
}
},
"has-binary-data": {
"version": "0.1.1",
"resolved": "https://registry.npmjs.org/has-binary-data/-/has-binary-data-0.1.1.tgz",
"integrity": "sha1-4QdJ+4eCilLflvQIZYfrSgOWZDk=",
"requires": {
"isarray": "0.0.1"
},
"dependencies": {
"isarray": {
"version": "0.0.1",
"resolved": "https://registry.npmjs.org/isarray/-/isarray-0.0.1.tgz",
"integrity": "sha1-ihis/Kmo9Bd+Cav8YDiTmwXR7t8="
}
}
},
"has-cors": {
"version": "1.0.3",
"resolved": "https://registry.npmjs.org/has-cors/-/has-cors-1.0.3.tgz",
"integrity": "sha1-UCrLmzEE2sM90mMOry+IiwuvTLM=",
"requires": {
"global": "https://github.com/component/global/archive/v2.0.1.tar.gz"
}
},
"has-flag": {
"version": "3.0.0",
"resolved": "https://registry.npmjs.org/has-flag/-/has-flag-3.0.0.tgz",
@@ -12299,6 +12491,17 @@
"minimalistic-assert": "^1.0.1"
}
},
"hawk": {
"version": "0.10.2",
"resolved": "https://registry.npmjs.org/hawk/-/hawk-0.10.2.tgz",
"integrity": "sha1-mzYd7pWpMWQObVBOBWCaj8OsRdI=",
"requires": {
"boom": "0.3.x",
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"json-stringify-safe": "~3.0.0",
"mime": "~1.2.7",
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client/package.json
+3 -12
View File
@@ -5,20 +5,11 @@
"description": "cellxgene is a web application for the interactive exploration of single cell sequence data.",
"repository": "https://github.com/chanzuckerberg/cellxgene",
"scripts": {
"backend-dev": "python3.6 -m venv cellxgene && source cellxgene/bin/activate && yes | pip uninstall cellxgene || true && pip install -e .. && cellxgene launch ",
"backend-dev-anno-ontology": "python3.6 -m venv cellxgene && source cellxgene/bin/activate && yes | pip uninstall cellxgene || true && pip install -e .. && cellxgene launch --experimental-annotations --experimental-annotations-ontology",
"backend-dev-anno": "python3.6 -m venv cellxgene && source cellxgene/bin/activate && yes | pip uninstall cellxgene || true && pip install -e .. && cellxgene launch --experimental-annotations",
"build": "npm run clean && webpack --config configuration/webpack/webpack.config.prod.js",
"clean": "rimraf build",
"build": "npm run clean && webpack --config configuration/webpack/webpack.config.prod.js",
"dev": "npm run clean && webpack --config configuration/webpack/webpack.config.dev.js",
"e2e": "node node_modules/jest/bin/jest.js --verbose false --config __tests__/e2e/e2eJestConfig.json e2e/e2e.test.js",
"fmt": "eslint --fix src",
"lint": "eslint src",
"smoke-test": "start-server-and-test start-server-for-test :5000 e2e",
"start": "node server/development.js",
"start-server-for-test": "cellxgene launch -p 5000 ../example-dataset/pbmc3k.h5ad",
"test": "node node_modules/jest/bin/jest.js",
"unit-test": "node node_modules/jest/bin/jest.js --testPathIgnorePatterns e2e"
"lint": "eslint src"
},
"engineStrict": true,
"engines": {
@@ -37,6 +28,7 @@
"@blueprintjs/core": "^3.22.3",
"@blueprintjs/icons": "^3.13.0",
"@blueprintjs/select": "^3.11.2",
"client": "0.0.1",
"d3": "^4.10.0",
"d3-scale-chromatic": "^1.5.0",
"flatbuffers": "^1.11.0",
@@ -101,7 +93,6 @@
"puppeteer": "^2.1.1",
"rimraf": "^3.0.1",
"serve-favicon": "^2.3.0",
"start-server-and-test": "^1.10.6",
"style-loader": "^1.1.3",
"sw-precache-webpack-plugin": "^1.0.0",
"url-loader": "^3.0.0",
client/server/development.js
+3 -3
View File
@@ -11,7 +11,7 @@ var utils = require("./utils");
process.env.NODE_ENV = "development";
var PORT = process.env.PORT || 3000;
const CLIENT_PORT = process.env.CXG_CLIENT_PORT;
// Set up compiler
var compiler = webpack(config);
@@ -22,7 +22,7 @@ compiler.plugin("invalid", () => {
});
compiler.plugin("done", stats => {
utils.formatStats(stats, PORT);
utils.formatStats(stats, CLIENT_PORT);
});
// Launch server
@@ -43,7 +43,7 @@ app.get("*", (req, res) => {
res.sendFile(path.resolve("index.html"));
});
app.listen(PORT, err => {
app.listen(CLIENT_PORT, err => {
if (err) {
console.log(err);
return;
client/src/globals.js
+19 -8
View File
@@ -1,4 +1,5 @@
import { Colors } from "@blueprintjs/core";
import { dispatchNetworkErrorMessageToUser } from "./util/actionHelpers";
/* if a categorical metadata field has more options than this, truncate */
export const maxCategoricalOptionsToDisplay = 100;
@@ -77,13 +78,23 @@ export const categoryLabelDisplayStringShortLength = 11;
export const tooltipHoverOpenDelay = 1000; /* ms delay before a tooltip displays */
export const tooltipHoverOpenDelayQuick = 500;
let _API = {
// prefix: "http://api.clustering.czi.technology/api/",
// prefix: "http://tabulamuris.cxg.czi.technology/api/",
// prefix: "http://api-staging.clustering.czi.technology/api/",
prefix: "http://localhost:5005/api/",
version: "v0.2/"
};
let _API;
if (window.CELLXGENE && window.CELLXGENE.API) {
_API = window.CELLXGENE.API;
} else {
if (process.env.CXG_SERVER_PORT === undefined) {
const errorMessage = "Please set the CXG_SERVER_PORT environment variable.";
dispatchNetworkErrorMessageToUser(errorMessage);
throw new Error(errorMessage);
}
_API = {
// prefix: "http://api.clustering.czi.technology/api/",
// prefix: "http://tabulamuris.cxg.czi.technology/api/",
// prefix: "http://api-staging.clustering.czi.technology/api/",
prefix: `http://localhost:${process.env.CXG_SERVER_PORT}/api/`,
version: "v0.2/"
};
}
if (window.CELLXGENE && window.CELLXGENE.API) _API = window.CELLXGENE.API;
export const API = _API;