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Code Issues Packages Projects Releases Wiki Activity

Update scanpy version (#688)

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Update to version 1.3.7
This commit is contained in:
Sidney Bell
2019-04-04 12:16:30 -07:00
committed by GitHub
parent 3167e38993
commit c9a56fa73a
3 changed files with 3 additions and 4 deletions
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server/app/scanpy_engine/scanpy_engine.py
+1 -1
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@@ -2,7 +2,7 @@ import warnings
import numpy as np import numpy as np
from pandas.core.dtypes.dtypes import CategoricalDtype from pandas.core.dtypes.dtypes import CategoricalDtype
import scanpy.api as sc import scanpy as sc
from server.app.driver.driver import CXGDriver from server.app.driver.driver import CXGDriver
from server.app.util.constants import Axis, DEFAULT_TOP_N from server.app.util.constants import Axis, DEFAULT_TOP_N
server/cli/prepare.py
+1 -1
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@@ -63,7 +63,7 @@ def prepare(
import matplotlib import matplotlib
matplotlib.use("Agg") matplotlib.use("Agg")
import scanpy.api as sc import scanpy as sc
# scanpy settings # scanpy settings
sc.settings.verbosity = 0 sc.settings.verbosity = 0
server/requirements.txt
+1 -2
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@@ -1,4 +1,3 @@
anndata>=0.6.13
click>=6.7 click>=6.7
Flask>=1.0.2 Flask>=1.0.2
Flask-Caching>=1.4.0 Flask-Caching>=1.4.0
@@ -9,7 +8,7 @@ flatbuffers>=1.10.0
matplotlib>=2.2 matplotlib>=2.2
numpy>=1.15.2 numpy>=1.15.2
pandas>=0.23.1 pandas>=0.23.1
scanpy>=1.3.2 scanpy>=1.3.7
scipy>=1.1.0 scipy>=1.1.0
scikit-learn>=0.19.1,!=0.20.0 scikit-learn>=0.19.1,!=0.20.0
tables>=3.5.1 tables>=3.5.1