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Fixes to compatibility tests (#1205)

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* Unpin anndata ver in tests against anndata master

* Add branch config to work on push

* Add links to tests in GitHub Actions status badges

* Remove temporary branch name
This commit is contained in:
Matt Weiden
2020-03-10 08:19:36 -07:00
committed by GitHub
parent ffdcc24a40
commit d8231a9a3b
2 changed files with 10 additions and 4 deletions
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.github/workflows/compatibility_tests.yml
+8 -2
View File
@@ -3,6 +3,9 @@ name: Compatibility Tests
on:
schedule:
- cron: '0 8 7 * 2'
push:
branches:
- master
env:
JEST_ENV: prod
@@ -95,7 +98,10 @@ jobs:
path: anndata
- name: Install dependencies
run: |
cd cellxgene && make pydist install-dist dev-env
cd ../anndata && pip install -e .
cd cellxgene
sed -i.bu -E 's/^anndata[>=]=[0-9]+.[0-9]+.[0-9]+$/anndata/g' server/requirements.txt
make pydist install-dist dev-env
cd ../anndata
pip install -e .
- name: Tests
run: cd cellxgene && make unit-test ${{ matrix.test-suite }}
README.md
+2 -2
View File
@@ -3,8 +3,8 @@
_an interactive explorer for single-cell transcriptomics data_
[![DOI](https://zenodo.org/badge/105615409.svg)](https://zenodo.org/badge/latestdoi/105615409) [![PyPI](https://img.shields.io/pypi/v/cellxgene)](https://pypi.org/project/cellxgene/) [![PyPI - Downloads](https://img.shields.io/pypi/dm/cellxgene)](https://pypistats.org/packages/cellxgene) [![GitHub last commit](https://img.shields.io/github/last-commit/chanzuckerberg/cellxgene)](https://github.com/chanzuckerberg/cellxgene/pulse)
![Push Tests](https://github.com/chanzuckerberg/cellxgene/workflows/Push%20Tests/badge.svg)
![Compatibility Tests](https://github.com/chanzuckerberg/cellxgene/workflows/Compatibility%20Tests/badge.svg)
[![Push Tests](https://github.com/chanzuckerberg/cellxgene/workflows/Push%20Tests/badge.svg)](https://github.com/chanzuckerberg/cellxgene/actions?query=workflow%3A%22Push+Tests%22)
[![Compatibility Tests](https://github.com/chanzuckerberg/cellxgene/workflows/Compatibility%20Tests/badge.svg)](https://github.com/chanzuckerberg/cellxgene/actions?query=workflow%3A%22Compatibility+Tests%22)
![Code Coverage](https://codecov.io/gh/chanzuckerberg/cellxgene/branch/master/graph/badge.svg)
cellxgene (pronounced "cell-by-gene") is an interactive data explorer for single-cell transcriptomics datasets, such as those coming from the [Human Cell Atlas](https://humancellatlas.org). Leveraging modern web development techniques to enable fast visualizations of at least 1 million cells, we hope to enable biologists and computational researchers to explore their data.