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Fixes to compatibility tests (#1205)
* Unpin anndata ver in tests against anndata master * Add branch config to work on push * Add links to tests in GitHub Actions status badges * Remove temporary branch name
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@@ -3,6 +3,9 @@ name: Compatibility Tests
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on:
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schedule:
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- cron: '0 8 7 * 2'
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push:
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branches:
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- master
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env:
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JEST_ENV: prod
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@@ -95,7 +98,10 @@ jobs:
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path: anndata
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- name: Install dependencies
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run: |
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cd cellxgene && make pydist install-dist dev-env
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cd ../anndata && pip install -e .
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cd cellxgene
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sed -i.bu -E 's/^anndata[>=]=[0-9]+.[0-9]+.[0-9]+$/anndata/g' server/requirements.txt
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make pydist install-dist dev-env
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cd ../anndata
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pip install -e .
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- name: Tests
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run: cd cellxgene && make unit-test ${{ matrix.test-suite }}
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