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Charlotte Weaver
2018-08-13 15:00:23 -07:00
parent a29ba8da4e
commit ddaa7016a5
1 changed files with 3 additions and 3 deletions
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server/app/scanpy_engine/scanpy_engine.py
+3 -3
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@@ -43,13 +43,13 @@ class ScanpyEngine(CXGDriver):
def _add_mandatory_annotations(self):
# ensure gene
self.data.var["name"] = list(self.data.var.index)
self.data.var.index = Series(list(range(self.data.var.shape[0])), dtype='int32')
self.data.var.index = Series(list(range(self.data.var.shape[0])), dtype="int32")
# ensure cell name
self.data.obs["name"] = list(self.data.obs.index)
self.data.obs.index = Series(list(range(self.data.obs.shape[0])), dtype='int32')
self.data.obs.index = Series(list(range(self.data.obs.shape[0])), dtype="int32")
def _validatate_data_types(self):
if self.data.X.dtype != 'float32':
if self.data.X.dtype != "float32":
warnings.warn(f"Scanpy data matrix is in {self.data.X.dtype} format not float32. "
f"Precision may be truncated.")