cleans up landing page (#541)

2026-09-23 23:58:12 +08:00 · 2019-01-04 14:20:23 -08:00
parent b0daeb3a9b
commit eceab377f7
4 changed files with 24 additions and 3 deletions
@@ -2,6 +2,8 @@ theme: jekyll-theme-cayman
 show_downloads: false

 nav:
+  - title: Home
+    url: /
  - title: Data
    url: data.html
  - title: FAQ
@@ -20,7 +20,6 @@
    <link rel="stylesheet" href="{{ '/assets/css/style.css?v=' | append: site.github.build_revision | relative_url }}">
  </head>
  <body>
-    <a id="skip-to-content" href="#content">Skip to the content.</a>

    <header class="page-header" role="banner">
      <h1 class="project-name">{{ site.title | default: site.github.repository_name }}</h1>
@@ -31,7 +30,7 @@
        {% endfor %}
      {% endif %}
      {% if site.github.is_project_page %}
-        <a href="{{ site.github.repository_url }}" class="btn">Code</a>
+        <a href="{{ site.github.repository_url }}" class="btn" target="_blank">Code</a>
      {% endif %}
    </header>

@@ -48,6 +48,26 @@ We use a [Welch's _t_-test](https://en.wikipedia.org/wiki/Welch%27s_t-test) impl

 # Problems, errors, & bugs

+#### How do I create a Python 3.6 environment for _cellxgene_?
+
+If you use conda and want to create a [conda environment](https://conda.io/docs/user-guide/tasks/manage-environments.html) for _cellxgene_ you can use the following commands
+
+```
+conda create --yes -n cellxgene python=3.6
+conda activate cellxgene
+pip install cellxgene
+```
+
+Or you can create a virtual environment by using
+
+```
+ENV_NAME=cellxgene
+python3.6 -m venv ${ENV_NAME}
+source ${ENV_NAME}/bin/activate
+pip install cellxgene
+```
+
+
 #### In my _prepare_ command I received the following error `Warning: louvain module is not installed, no clusters will be calculated. To fix this please install cellxgene with the optional feature louvain enabled`

 Louvain clustering requires additional dependencies, so we don't include them by default. For now, you need to specify that you want these packages by using
@@ -10,7 +10,7 @@ _cellxgene_ is an interactive data explorer for single-cell transcriptomics data

 ## getting started

-_cellxgene_ requires **Python 3.6**
+_cellxgene_ **only** supports Python 3.6. We recommend [installing _cellxgene_ into a conda or virtual environment.](/faq.html#how-do-i-create-a-python-36-environment-for-cellxgene)

 Install the package.
 ``` bash