mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-10-03 14:08:12 +08:00
cleans up landing page (#541)
This commit is contained in:
+20
@@ -48,6 +48,26 @@ We use a [Welch's _t_-test](https://en.wikipedia.org/wiki/Welch%27s_t-test) impl
|
||||
|
||||
# Problems, errors, & bugs
|
||||
|
||||
#### How do I create a Python 3.6 environment for _cellxgene_?
|
||||
|
||||
If you use conda and want to create a [conda environment](https://conda.io/docs/user-guide/tasks/manage-environments.html) for _cellxgene_ you can use the following commands
|
||||
|
||||
```
|
||||
conda create --yes -n cellxgene python=3.6
|
||||
conda activate cellxgene
|
||||
pip install cellxgene
|
||||
```
|
||||
|
||||
Or you can create a virtual environment by using
|
||||
|
||||
```
|
||||
ENV_NAME=cellxgene
|
||||
python3.6 -m venv ${ENV_NAME}
|
||||
source ${ENV_NAME}/bin/activate
|
||||
pip install cellxgene
|
||||
```
|
||||
|
||||
|
||||
#### In my _prepare_ command I received the following error `Warning: louvain module is not installed, no clusters will be calculated. To fix this please install cellxgene with the optional feature louvain enabled`
|
||||
|
||||
Louvain clustering requires additional dependencies, so we don't include them by default. For now, you need to specify that you want these packages by using
|
||||
|
||||
Reference in New Issue
Block a user