mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-10-07 18:58:12 +08:00
cleans up landing page (#541)
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@@ -2,6 +2,8 @@ theme: jekyll-theme-cayman
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show_downloads: false
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show_downloads: false
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nav:
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nav:
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- title: Home
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url: /
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- title: Data
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- title: Data
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url: data.html
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url: data.html
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- title: FAQ
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- title: FAQ
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@@ -20,7 +20,6 @@
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<link rel="stylesheet" href="{{ '/assets/css/style.css?v=' | append: site.github.build_revision | relative_url }}">
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<link rel="stylesheet" href="{{ '/assets/css/style.css?v=' | append: site.github.build_revision | relative_url }}">
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</head>
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</head>
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<body>
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<body>
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<a id="skip-to-content" href="#content">Skip to the content.</a>
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<header class="page-header" role="banner">
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<header class="page-header" role="banner">
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<h1 class="project-name">{{ site.title | default: site.github.repository_name }}</h1>
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<h1 class="project-name">{{ site.title | default: site.github.repository_name }}</h1>
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@@ -31,7 +30,7 @@
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{% endfor %}
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{% endfor %}
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{% endif %}
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{% endif %}
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{% if site.github.is_project_page %}
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{% if site.github.is_project_page %}
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<a href="{{ site.github.repository_url }}" class="btn">Code</a>
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<a href="{{ site.github.repository_url }}" class="btn" target="_blank">Code</a>
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{% endif %}
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{% endif %}
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</header>
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</header>
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+20
@@ -48,6 +48,26 @@ We use a [Welch's _t_-test](https://en.wikipedia.org/wiki/Welch%27s_t-test) impl
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# Problems, errors, & bugs
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# Problems, errors, & bugs
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#### How do I create a Python 3.6 environment for _cellxgene_?
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If you use conda and want to create a [conda environment](https://conda.io/docs/user-guide/tasks/manage-environments.html) for _cellxgene_ you can use the following commands
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```
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conda create --yes -n cellxgene python=3.6
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conda activate cellxgene
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pip install cellxgene
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```
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Or you can create a virtual environment by using
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```
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ENV_NAME=cellxgene
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python3.6 -m venv ${ENV_NAME}
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source ${ENV_NAME}/bin/activate
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pip install cellxgene
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```
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#### In my _prepare_ command I received the following error `Warning: louvain module is not installed, no clusters will be calculated. To fix this please install cellxgene with the optional feature louvain enabled`
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#### In my _prepare_ command I received the following error `Warning: louvain module is not installed, no clusters will be calculated. To fix this please install cellxgene with the optional feature louvain enabled`
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Louvain clustering requires additional dependencies, so we don't include them by default. For now, you need to specify that you want these packages by using
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Louvain clustering requires additional dependencies, so we don't include them by default. For now, you need to specify that you want these packages by using
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+1
-1
@@ -10,7 +10,7 @@ _cellxgene_ is an interactive data explorer for single-cell transcriptomics data
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## getting started
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## getting started
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_cellxgene_ requires **Python 3.6**
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_cellxgene_ **only** supports Python 3.6. We recommend [installing _cellxgene_ into a conda or virtual environment.](/faq.html#how-do-i-create-a-python-36-environment-for-cellxgene)
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Install the package.
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Install the package.
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``` bash
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``` bash
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