cleans up landing page (#541)

This commit is contained in:
Justin Kiggins
2019-01-04 14:20:23 -08:00
committed by GitHub
parent b0daeb3a9b
commit eceab377f7
4 changed files with 24 additions and 3 deletions
+2
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@@ -2,6 +2,8 @@ theme: jekyll-theme-cayman
show_downloads: false show_downloads: false
nav: nav:
- title: Home
url: /
- title: Data - title: Data
url: data.html url: data.html
- title: FAQ - title: FAQ
+1 -2
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@@ -20,7 +20,6 @@
<link rel="stylesheet" href="{{ '/assets/css/style.css?v=' | append: site.github.build_revision | relative_url }}"> <link rel="stylesheet" href="{{ '/assets/css/style.css?v=' | append: site.github.build_revision | relative_url }}">
</head> </head>
<body> <body>
<a id="skip-to-content" href="#content">Skip to the content.</a>
<header class="page-header" role="banner"> <header class="page-header" role="banner">
<h1 class="project-name">{{ site.title | default: site.github.repository_name }}</h1> <h1 class="project-name">{{ site.title | default: site.github.repository_name }}</h1>
@@ -31,7 +30,7 @@
{% endfor %} {% endfor %}
{% endif %} {% endif %}
{% if site.github.is_project_page %} {% if site.github.is_project_page %}
<a href="{{ site.github.repository_url }}" class="btn">Code</a> <a href="{{ site.github.repository_url }}" class="btn" target="_blank">Code</a>
{% endif %} {% endif %}
</header> </header>
+20
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@@ -48,6 +48,26 @@ We use a [Welch's _t_-test](https://en.wikipedia.org/wiki/Welch%27s_t-test) impl
# Problems, errors, & bugs # Problems, errors, & bugs
#### How do I create a Python 3.6 environment for _cellxgene_?
If you use conda and want to create a [conda environment](https://conda.io/docs/user-guide/tasks/manage-environments.html) for _cellxgene_ you can use the following commands
```
conda create --yes -n cellxgene python=3.6
conda activate cellxgene
pip install cellxgene
```
Or you can create a virtual environment by using
```
ENV_NAME=cellxgene
python3.6 -m venv ${ENV_NAME}
source ${ENV_NAME}/bin/activate
pip install cellxgene
```
#### In my _prepare_ command I received the following error `Warning: louvain module is not installed, no clusters will be calculated. To fix this please install cellxgene with the optional feature louvain enabled` #### In my _prepare_ command I received the following error `Warning: louvain module is not installed, no clusters will be calculated. To fix this please install cellxgene with the optional feature louvain enabled`
Louvain clustering requires additional dependencies, so we don't include them by default. For now, you need to specify that you want these packages by using Louvain clustering requires additional dependencies, so we don't include them by default. For now, you need to specify that you want these packages by using
+1 -1
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@@ -10,7 +10,7 @@ _cellxgene_ is an interactive data explorer for single-cell transcriptomics data
## getting started ## getting started
_cellxgene_ requires **Python 3.6** _cellxgene_ **only** supports Python 3.6. We recommend [installing _cellxgene_ into a conda or virtual environment.](/faq.html#how-do-i-create-a-python-36-environment-for-cellxgene)
Install the package. Install the package.
``` bash ``` bash