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@@ -4,7 +4,7 @@ Cellxgene is intended to be used by researchers on their local machines. However
In the meantime, you can see examples of how other groups have approached this [here](gallery). While we don't officially support web deployment, we've offered some guidance below on one way to deploy cellxgene to the web.
## General Notes
## General notes
Please consider the following when deploying cellxgene in any "hosted" environment, especially where access from the broader Internet is possible:
@@ -13,7 +13,7 @@ Please consider the following when deploying cellxgene in any "hosted" environme
If you believe you have found a security-related issue with cellxgene, please report the issue immediately to <security@chanzuckerberg.com>.
## Configuration Options Discussion
## Configuration options discussion
The following configuration options require special consideration in any multi-user or hosted environment:
@@ -23,7 +23,7 @@ The following configuration options require special consideration in any multi-u
`--experimental-annotations-file`: this specifies a single file for all end-user annotations, and is incompatible with hosted or multi-user use of cellxgene. Using it will cause loss of user annotation data (ie, the CSV file will be overwritten). If you wish to explore using the _experimental_ annotations feature in a multi-user environment, please refer to the [annotations documentation](annotations).
## Useful Community Projects
## Community software projects
There are a number of teams building tools or infrastructure to better utilize cellxgene in a multiple user environment. While we do not endorse any particular solution, you may find the following helpful.
@@ -31,6 +31,17 @@ There are a number of teams building tools or infrastructure to better utilize c
If you know of other solutions, drop us a note and we'll add to this list.
## Third-party deployments
- Chan Zuckerberg BioHub's [Tabula Muris Senis](https://tabula-muris-senis.ds.czbiohub.org/)
- Novartis's [cellxgene gateway](https://github.com/Novartis/cellxgene-gateway)
- Interactive Enviroment in the [Galaxy Project](https://galaxyproject.org/) ([patch notes](https://docs.galaxyproject.org/en/release_19.05/releases/19.05_announce.html))
- Various instances by the Wellcome Sanger Institute
- [Tissue Stability Cell Atlas](https://www.tissuestabilitycellatlas.org/)
- [Human Kidney Cell Atlas](https://www.kidneycellatlas.org/)
- [Atlas of Anopheles hemocytes](https://hemocytes.cellgeni.sanger.ac.uk/)
- [Murine melanoma atlas](https://melanoma.cellgeni.sanger.ac.uk/)
# Deploying cellxgene with Heroku
## Quickstart