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@@ -4,7 +4,7 @@ Cellxgene is intended to be used by researchers on their local machines. However
In the meantime, you can see examples of how other groups have approached this [here](gallery). While we don't officially support web deployment, we've offered some guidance below on one way to deploy cellxgene to the web. In the meantime, you can see examples of how other groups have approached this [here](gallery). While we don't officially support web deployment, we've offered some guidance below on one way to deploy cellxgene to the web.
## General Notes ## General notes
Please consider the following when deploying cellxgene in any "hosted" environment, especially where access from the broader Internet is possible: Please consider the following when deploying cellxgene in any "hosted" environment, especially where access from the broader Internet is possible:
@@ -13,7 +13,7 @@ Please consider the following when deploying cellxgene in any "hosted" environme
If you believe you have found a security-related issue with cellxgene, please report the issue immediately to <security@chanzuckerberg.com>. If you believe you have found a security-related issue with cellxgene, please report the issue immediately to <security@chanzuckerberg.com>.
## Configuration Options Discussion ## Configuration options discussion
The following configuration options require special consideration in any multi-user or hosted environment: The following configuration options require special consideration in any multi-user or hosted environment:
@@ -23,7 +23,7 @@ The following configuration options require special consideration in any multi-u
`--experimental-annotations-file`: this specifies a single file for all end-user annotations, and is incompatible with hosted or multi-user use of cellxgene. Using it will cause loss of user annotation data (ie, the CSV file will be overwritten). If you wish to explore using the _experimental_ annotations feature in a multi-user environment, please refer to the [annotations documentation](annotations). `--experimental-annotations-file`: this specifies a single file for all end-user annotations, and is incompatible with hosted or multi-user use of cellxgene. Using it will cause loss of user annotation data (ie, the CSV file will be overwritten). If you wish to explore using the _experimental_ annotations feature in a multi-user environment, please refer to the [annotations documentation](annotations).
## Useful Community Projects ## Community software projects
There are a number of teams building tools or infrastructure to better utilize cellxgene in a multiple user environment. While we do not endorse any particular solution, you may find the following helpful. There are a number of teams building tools or infrastructure to better utilize cellxgene in a multiple user environment. While we do not endorse any particular solution, you may find the following helpful.
@@ -31,6 +31,17 @@ There are a number of teams building tools or infrastructure to better utilize c
If you know of other solutions, drop us a note and we'll add to this list. If you know of other solutions, drop us a note and we'll add to this list.
## Third-party deployments
- Chan Zuckerberg BioHub's [Tabula Muris Senis](https://tabula-muris-senis.ds.czbiohub.org/)
- Novartis's [cellxgene gateway](https://github.com/Novartis/cellxgene-gateway)
- Interactive Enviroment in the [Galaxy Project](https://galaxyproject.org/) ([patch notes](https://docs.galaxyproject.org/en/release_19.05/releases/19.05_announce.html))
- Various instances by the Wellcome Sanger Institute
- [Tissue Stability Cell Atlas](https://www.tissuestabilitycellatlas.org/)
- [Human Kidney Cell Atlas](https://www.kidneycellatlas.org/)
- [Atlas of Anopheles hemocytes](https://hemocytes.cellgeni.sanger.ac.uk/)
- [Murine melanoma atlas](https://melanoma.cellgeni.sanger.ac.uk/)
# Deploying cellxgene with Heroku # Deploying cellxgene with Heroku
## Quickstart ## Quickstart