mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-15 12:47:56 +08:00
Build improvements (#577)
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1
.gitignore
vendored
1
.gitignore
vendored
@@ -9,6 +9,7 @@ coverage
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# production
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build/
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build-dev/
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dist/
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*.egg-info
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@@ -8,8 +8,8 @@ cache:
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install:
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- set -eo pipefail
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- pip install flake8
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- ./bin/build-client
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- pip install -e .
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- make build
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- make install
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- pip install -r server/requirements-dev.txt
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- docker build .
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script:
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@@ -1,15 +0,0 @@
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#!/bin/bash
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DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null && pwd )"
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CELLXGENE_DIR=$(dirname $DIR)
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cd $CELLXGENE_DIR
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npm install --prefix client/ client
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npm run --prefix client build
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rm -rf server/app/web/static
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mkdir -p server/app/web/static/img
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cp client/build/index.html server/app/web/templates/
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cp -r client/build/static server/app/web/
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cp client/build/favicon.png server/app/web/static/img
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cp client/build/service-worker.js server/app/web/static/js/
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18
bin/clean
18
bin/clean
@@ -1,18 +0,0 @@
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DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null && pwd )"
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CELLXGENE_DIR=$(dirname $DIR)
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echo "Uninstalling cellxgene"
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yes | pip uninstall cellxgene
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echo "removing node_modules"
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rm -rf $CELLXGENE_DIR/client/node_modules
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echo "removing client_build"
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rm -rf $CELLXGENE_DIR/client/build
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echo "removing dist"
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rm -rf $CELLXGENE_DIR/dist
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echo "removing egg-info"
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rm -rf $CELLXGENE_DIR/cellxgene.egg-info
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echo "removing static files"
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rm -f $CELLXGENE_DIR/server/app/web/templates/index.html
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rm -rf $CELLXGENE_DIR/server/app/web/static
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echo "cellxgene cleanup complete"
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@@ -20,18 +20,14 @@ Follow these steps to create a release.
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1. Preparation:
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- python3.6 environment, and a cellxgene clone
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- install required tools: `pip install -r requirements-dev.txt`
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- Define the release version number, using [semantic versioning](https://semver.org/),
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and specifying all three digits (eg, 0.3.0)
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- Write the release title and release notes and add to
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[release notes document](https://docs.google.com/document/d/1KnHwkYfhyWO5H8BDcMu7y3ogjvq5Yi4OwpmZ8DB6w0Y/edit)
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2. Create a release branch, eg, `release-version`
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3. In the release branch:
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- Run `bumpversion --config-file .bumpversion.cfg [major | minor | patch]`,
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where you choose major/minor/patch depending on which part of the version
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- Run `make release-stage-1 PART=[major | minor | patch]` where you choose major/minor/patch depending on which part of the version
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is being bumped (eg, 0.2.9->0.3 is minor).
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- Clean up existing environment using `bin/clean`
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- Build the JS asserts using `bin/build-client`
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4. Commit and push the new branch
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5. Create a PR for the release.
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- [optional] As needed, conduct PR review.
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@@ -44,18 +40,26 @@ Follow these steps to create a release.
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- Type title `Release {version num}`
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- [optional] Check pre-release if this release is not ready for production
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- Publish Release
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8. Publish to pypi by performing the following steps (assumes you have `setuptools`
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and `twine` installed, that you have registered for pypi, and that you have
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write access to the cellxgene pypi package):
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- Build the distribution by calling `python setup.py sdist`
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inside the top-level directory
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- [optional] Upload the package to test pypi
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`twine upload --repository-url https://test.pypi.org/legacy/ dist/*`
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- [optional] Test the test installation in a fresh virtual environment using
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`pip install --index-url https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple cellxgene`
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- Upload the package to real pypi using `twine upload dist/*`
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8. Publish to pypi by performing the following steps (assumes you that you have registered for pypi,
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and that you have write access to the cellxgene pypi package):
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- Build the distribution and upload to test pypi `make release-stage-2`
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- [optional] Test the test installation in a fresh virtual environment using `make install-release-test`
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- Upload the package to real pypi using `make release-stage-final`
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- [optional] Test the installation in a fresh virtual environment using
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`pip install cellxgene`
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- **Troubleshooting**:
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- Fails to upload to test.pypi: pypi doesn't allow you to reupload a release with the same version number,
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if you accidentally burned a release number you want to use on prod, you have a couple options.
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1) OPTION 1: Create distribution `make pydist`; test release locally `pip install dist/<release tarball>`;
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then upload to prod `make release-stage-final`.
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2) OPTION 2: (DANGER) release directly to prod: `make release-burned`.
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3) OPTION 3: If the release was burned on prod as well run from Step 3 again with option
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PART=patch until you get to an unburned version.
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- The release doesn't install or fails your tests when you install it: Delete it from pypi - Go to pypi.org, sign in,
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go to the cellxgene package, click manage, then in the options drop down, click delete and
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follow the instructions. You will not be able to use that release number again. If it is a minor bug
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and not a major regression, you can just release a patch.
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The optional steps are for testing purposes, and are recommended
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for publishing any major releases, and any releases that significantly
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122
makefile
Normal file
122
makefile
Normal file
@@ -0,0 +1,122 @@
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BUILDDIR := build
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CLIENTBUILD := $(BUILDDIR)/client
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SERVERBUILD := $(BUILDDIR)/server
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CLEANFILES := $(BUILDDIR)/ client/build dist cellxgene.egg-info
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PART ?= patch
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# BUILDING PACKAGE
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build : clean build-server
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@echo "done"
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build-server : build-client
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mkdir -p $(SERVERBUILD)
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cp -r server/* $(SERVERBUILD)
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cp -r client/build/ $(CLIENTBUILD)
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mkdir -p $(SERVERBUILD)/app/web/static/img
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cp $(CLIENTBUILD)/index.html $(SERVERBUILD)/app/web/templates/
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cp -r $(CLIENTBUILD)/static $(SERVERBUILD)/app/web/
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cp $(CLIENTBUILD)/favicon.png $(SERVERBUILD)/app/web/static/img
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cp $(CLIENTBUILD)/service-worker.js $(SERVERBUILD)/app/web/static/js/
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cp MANIFEST.in README.md setup.cfg setup.py $(BUILDDIR)
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build-client :
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npm install --prefix client/ client
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npm run --prefix client build
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# If you are actively developing in the server folder use this, dirties the source tree
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build-for-server-dev : clean-server build-client
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mkdir -p server/app/web/static/img
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cp client/build/index.html server/app/web/templates/
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cp -r client/build/static server/app/web/
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cp client/build/favicon.png server/app/web/static/img
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cp client/build/service-worker.js server/app/web/static/js/
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clean : clean-lite clean-server
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rm -rf client/node_modules
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# cleaning node_modules is the longest one, so we avoid that if possible
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clean-lite :
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rm -rf $(CLEANFILES)
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clean-server :
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rm -f server/app/web/templates/index.html
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rm -rf server/app/web/static
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.PHONY : build build-server build-client build-for-server-dev clean clean-lite clean-server
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# CREATING DISTRIBUTION RELEASE
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pydist : build
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cd $(BUILDDIR); python setup.py sdist -d ../dist
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@echo "done"
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.PHONY : pydist
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# RELEASE HELPERS
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# create new version to commit to master
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release-stage-1 : dev-env bump clean-lite gen-package-lock
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@echo "Version bumped part:$(PART) and client built. Ready to commit and push"
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# build dist and release to dev pypi
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release-stage-2 : dev-env pydist twine
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@echo "Dist built and uploaded to test.pypi.org"
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@echo "Test the install `make install-release-test` and then upload to Pypi prod"
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@echo "`make twine-prod`"
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release-stage-final: twine-prod
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@echo "Release uploaded to pypi.org"
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# DANGER: releases directly to prod
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# use this if you accidently burned a test release version number,
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release-burned : dev-env pydist twine-prod
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@echo "Dist built and uploaded to pypi.org"
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@echo "Test the install `make install-release`"
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dev-env :
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pip install -r server/requirements-dev.txt
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# give PART=[major, minor, part] as param to make bump
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bump :
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bumpversion --config-file .bumpversion.cfg $(PART)
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twine :
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twine upload --repository-url https://test.pypi.org/legacy/ dist/*
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twine-prod :
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twine upload dist/*
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# quicker than re-building client
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gen-package-lock :
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npm install --prefix client/ client
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.PHONY : release-stage-1 release-stage-2 release-stage-final release-burned dev-env bump twine twine-prod gen-package-lock
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# INSTALL
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# setup.py sucks when you have your library in a separate folder, adding these in to help setup envs
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# install from build directory
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install : uninstall
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cd $(BUILDDIR); pip install -e .
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# install from source tree for development
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install-dev : uninstall
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pip install -e .
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# install from test.pypi to test your release
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install-release-test : uninstall
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pip install --index-url https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple cellxgene
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@echo "Installed cellxgene from test.pypi.org, now run and smoke test"
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# install from pypi to test your release
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install-release : uninstall
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pip install cellxgene
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@echo "Installed cellxgene from pypi.org"
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uninstall :
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yes | pip uninstall cellxgene || true
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.PHONY : install install-dev install-release-test install-release uninstall
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