* Small fix for handling display versions
Making a distinction between __version__ and the version we display in the info panel (displayr_version).
The hosted cellxgene can overwrite the display_version using a plugin.
Improve version handling in the customized assets
* As part of https://github.com/chanzuckerberg/cellxgene/pull/1548 we
accidentally removed the part of the "get_or_else_dev_env_default"
function that allowed users to override the environment variables.
This commit adds that back.
* When environment.default was changed from a shell script file to json,
the shell commands used to parameterize DATASET were not evaluated.
This commit fixes this issue as well.
* 1510-smoke-test
* config default
* update tests
* update test config
* fix linter errors
* more comments
* address comments
* use npm install in push_tests.yml
* use environment.default.json
* adding docs
* Take care of @mweiden's nits
* Save screenshots in the __tests__/screenshots/ directory
* typo
* docs
* Add chart tests (#1580)
* merge tests
* check if bin creation returned null before rendering charts (#1576)
* check if bin creation returned null before rendering charts
* refactor chart rendering into functions (#1577)
* little fixes from PR
* reintroduce fix to check for null values
* change getAllByClass to return element
* slice instead
* new stackedbar test
* feedback-1573-test (#1579)
* feedback-1573-test
* enable whole test set
* revert tests
Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
* tweak test to actually render chart
* include snapshot
* remove async
* fix getAllHistograms
* properly grab id
Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
Co-authored-by: Matt Weiden <538456+mweiden@users.noreply.github.com>
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
* add sentry webpack plugin
* allow override of webpack config
* work around cheerio inability to parse jinga templates
* webpack can not minify jinja templates
* allow script injection to specify other attributes
* allow script injection to specify other attributes
* Adjustments to make plugin systems work
* Add sourcemaps for javascript in prod webpack
* Update .gitignore
* Fix spelling errors
Co-authored-by: Matt Weiden <538456+mweiden@users.noreply.github.com>
* Cleanup the backend-dev convenience method
* Add the frontend_dev convenience method
frontend_dev is a soup-to-nuts convenience method for setting up the FE
development environment with node running a the client code on port 3000
with the a separate cellxgene package serving the API over port 5005 in
the background.
The script can be run from Finder.
* Update the developer scripts documentation
* Remove the 'test' make target in the client Makefile
Rationale:
* Given how long the smoke tests take to run, it is unlikely that
developers will want to run all tests together.
* It is unlikely that developers will have set up the backend server
properly for the tests to pass.
* Available commands should be safe-ish and not lend themselves to
confusing errors.
* You can still group tests by concatenating them in a make command, as
in `make unit-test smoke-test`.
* This target isn't used in any of our CI pipelines -- KISS.
* Some version of python3...
* Minor typos in docs
* Respond to feedback from @bkmartinjr
* Make adjustments so that DATASET path is predictable
* Simplify environment defaults a bit
* early, non-working eb config
* hosted cellxgene
In this PR, contains scripts and instructions for deploying cellxgene
for AWS elastic beanstalk. It supports the multi-dataset option.
The Makefile in the server/eb directory creates an artifact.zip
file, which can be deploy at AWS EB.
The server/eb directory contains:
app.py - flask app to run the server
Makefile - which creates an artifact.zip file which can be deployed.
README.md - instructions for setting up and deploying the eb app.
* hosted cellxgene (#38)
In this PR, contains scripts and instructions for deploying cellxgene
for AWS elastic beanstalk. It supports the multi-dataset option.
The Makefile in the server/eb directory creates an artifact.zip
file, which can be deploy at AWS EB.
The server/eb directory contains:
app.py - flask app to run the server
Makefile - which creates an artifact.zip file which can be deployed.
README.md - instructions for setting up and deploying the eb app.
* Update how artifact.zip is created
prune the server/test and server/eb directories
* Remove debugging print statements
* fixes from review comments
* fix lint
Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>
* Collect all env vars in one, easy-to-find place
Past state:
* Default environement variables were stored in both client/package.json
and client/__tests__/e2e/config.js
* Constants that should have been linked--like the cellxgene server port
during testing--were repeated.
With this commit:
* All environment variables are parameterized
* All environment variables are packaged in default env files
* Move npm scripts to client Makefile
* Respond to feedback from @seve and @bkmartinjr
