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588 Commits

Author SHA1 Message Date
atarashansky
ffcf6eb5d8 chore: Release version 1.1.2 (#2611) 
* Bump version: 1.1.1 → 1.1.2-rc.0

* fix: release candidate 1.1.2

* Bump version: 1.1.2-rc.0 → 1.1.2

* promote

---------

Co-authored-by: atarashansky <atarashansky@CZIMACOS3990.hsd1.ma.comcast.net>
 2023-04-26 15:01:57 -04:00
Andrew Tolopko
f48d06fb90 Bump version: 1.1.0 → 1.1.1 (#2572) 2022-09-21 15:33:28 -04:00
Severiano Badajoz
84563291a0 fix: fix static file serving in webpack (#2574) 
Co-authored-by: Seve Badajoz <severiano.badajoz@chanzuckerberg.com>
 2022-09-21 18:03:03 +00:00
ashin-czi
450261f109 chore: updating Annotate favicon and logo icon (#2556) 
* chore: replacing html icon with png icon and updating favicon
 2022-08-25 16:01:03 +00:00
ashin-czi
c0f4ad6dfa docs: updating readme and display version for rebranding (#2550) 
* docs: updating readme and display version for rebranding

- CELLxGENE -> CELLxGENE Annotate
- reverting __init__.py display_version back to "cellxgene"
- changing page titles to "CELLxGENE | Annotate"
 2022-08-25 15:41:26 +00:00
Andrew Tolopko
a9044b01df release version 1.1.0 (#2548) 
* Bump version: 1.0.1 → 1.1.0-rc.0

* bump version to v1.1.0

* Bump version: 1.1.0-rc.0 → 1.1.0-rc.1

* bump version to v1.1.0 rc1

rc0 was previously used by an aborted release attempt

* Bump version: 1.1.0-rc.1 → 1.1.0

Co-authored-by: Seve Badajoz <severiano.badajoz@chanzuckerberg.com>
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
 2022-08-23 10:02:23 -07:00
ashin-czi
11b948369f fix: reverting back to old icon 2022-08-18 14:49:59 -04:00
ashin-czi
a2dc0c25b1 chore: updating Annotate favicon 2022-08-11 13:30:19 -04:00
Andrew Tolopko
69a6d52240 fix embedding selection (#2543) 
reverted code to previous implementation that was presumably changed due to a "destructuring assignment" lint error; explicitly ignoring error now
 2022-07-28 15:49:33 -04:00
Severiano Badajoz
d753441acc chore(webpack): remove script-ext-html-webpack-plugin (#2534) 
Co-authored-by: Seve Badajoz <severiano.badajoz@chanzuckerberg.com>
 2022-07-12 13:42:20 -04:00
Rohan Agarwal
8b4c1e418e chore: replace optimize-css-assets-webpack-plugin with css-minimizer-webpack-plugin (#2525) 
* Replace optimize-css-assets-webpack-plugin with css-minimizer-webpack-plugin

* Fix lint issues in JS

* remove favicons

* update snapshots

* update annotations snapshots

Co-authored-by: Trent Smith <1429913+Bento007@users.noreply.github.com>
Co-authored-by: Seve Badajoz <sbadajoz@chanzuckerberg.com>
 2022-06-07 13:13:17 -07:00
Severiano Badajoz
002c9a5c7f release version 1.0.1 (#2497) 
* Bump version: 1.0.0 → 1.0.1-rc.0

* Bump version: 1.0.1-rc.0 → 1.0.1
 2022-02-28 15:18:21 -08:00
dependabot[bot]
e6a0351079 chore(deps): bump nanoid from 3.1.25 to 3.3.1 in /client (#2488) 
Bumps [nanoid](https://github.com/ai/nanoid) from 3.1.25 to 3.3.1.
- [Release notes](https://github.com/ai/nanoid/releases)
- [Changelog](https://github.com/ai/nanoid/blob/main/CHANGELOG.md)
- [Commits](https://github.com/ai/nanoid/compare/3.1.25...3.3.1)

---
updated-dependencies:
- dependency-name: nanoid
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-02-25 09:57:22 -08:00
dependabot[bot]
38fdc649f5 chore(deps): bump axios from 0.21.1 to 0.21.4 in /client (#2491) 
Bumps [axios](https://github.com/axios/axios) from 0.21.1 to 0.21.4.
- [Release notes](https://github.com/axios/axios/releases)
- [Changelog](https://github.com/axios/axios/blob/master/CHANGELOG.md)
- [Commits](https://github.com/axios/axios/compare/v0.21.1...v0.21.4)

---
updated-dependencies:
- dependency-name: axios
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-02-24 14:20:17 -08:00
dependabot[bot]
69a5d5e837 chore(deps): bump tmpl from 1.0.4 to 1.0.5 in /client (#2490) 
Bumps [tmpl](https://github.com/daaku/nodejs-tmpl) from 1.0.4 to 1.0.5.
- [Release notes](https://github.com/daaku/nodejs-tmpl/releases)
- [Commits](https://github.com/daaku/nodejs-tmpl/commits/v1.0.5)

---
updated-dependencies:
- dependency-name: tmpl
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-02-24 14:05:26 -08:00
dependabot[bot]
b854c58eea chore(deps): bump simple-get from 3.1.0 to 3.1.1 in /client (#2489) 
Bumps [simple-get](https://github.com/feross/simple-get) from 3.1.0 to 3.1.1.
- [Release notes](https://github.com/feross/simple-get/releases)
- [Commits](https://github.com/feross/simple-get/compare/v3.1.0...v3.1.1)

---
updated-dependencies:
- dependency-name: simple-get
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-02-24 13:46:07 -08:00
dependabot[bot]
2d650ba50d chore(deps): bump follow-redirects from 1.14.2 to 1.14.8 in /client (#2484) 
Bumps [follow-redirects](https://github.com/follow-redirects/follow-redirects) from 1.14.2 to 1.14.8.
- [Release notes](https://github.com/follow-redirects/follow-redirects/releases)
- [Commits](https://github.com/follow-redirects/follow-redirects/compare/v1.14.2...v1.14.8)

---
updated-dependencies:
- dependency-name: follow-redirects
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-02-24 11:57:08 -08:00
Severiano Badajoz
853976b716 release version 1.0.0 (#2466) 
* Bump version: 0.19.0 → 1.0.0-rc.0

* Bump version: 1.0.0-rc.0 → 1.0.0
 2021-11-02 14:53:26 -07:00
Colin Megill
8e011314e9 Remove log (#2463) 2021-10-14 18:02:54 +00:00
Ben MR
c81731d32c [FE: fix #2371] fix for when labels are null (#2462) 
Categoricals can have nulls
 2021-10-05 12:17:34 -07:00
Colin Megill
3b091d888d Update diffexpButtons.js (#2461) 2021-10-04 15:35:55 -07:00
Timmy Huang
79aeedc6c3 refactor: 2235 remove cookie banner (#2459) 2021-10-04 11:26:01 -07:00
Colin Megill
e6bacf043b typo fix (#2460) 2021-10-01 18:28:47 -07:00
Colin Megill
be020deaa6 Update infoMenu.js (#2455) 
Fixes #2452
 2021-09-29 13:00:55 -07:00
Ben MR
f4986c9c7d Release version 0.19.0 (#2444) 
* Bump version: 0.18.0 → 0.19.0-rc.0

* release can 0.19.0

* Bump version: 0.19.0-rc.0 → 0.19.0-rc.1

* bump rc

* Bump version: 0.19.0-rc.1 → 0.19.0

* release final
 2021-09-28 11:10:24 -07:00
Colin Megill
a0011b0872 cursor pointer on mit license and version (#2447) 2021-09-27 09:47:34 -07:00
Colin Megill
77fff0bd9c Remove pointer on gene (#2445) 
* Remove grab

Fixes #2438

* snapshot

* pointer

* snapshot
 2021-09-24 12:21:32 -07:00
Colin Megill
15714e9924 Remove grab (#2439) 
* Remove grab

Fixes #2438

* snapshot
 2021-09-23 10:30:55 -07:00
Severiano Badajoz
5eb0ecc997 chore: update frontend packages (#2442) 
* run audit

* migrate husky
 2021-09-22 10:22:44 -07:00
Colin Megill
7f068cd576 Reverse gene list order (#2432) 
Fixes #2420
 2021-09-21 11:53:50 -07:00
Madison Dunitz
3ebbb0ccbf move common code into server, update tests and makefile (#2425) 
* move common code into server, update tests and makefile

remove backend directory, refactor

update smoke tests
 2021-09-20 18:50:06 -07:00
Severiano Badajoz
f49c3d8fe7 feat: remove info drawer and reintroduce singleton categories (#2421) 
* refactor: drop non-session auth from frontend

* remove dataset drawer and reintroduce singleton values
 2021-09-20 16:58:55 +00:00
Ben MR
ef2ab07ca0 Clean up dead/hosted code [zh2310] (#2430) 
* Clean up dead/hosted code

* Remove schema conversion tool and related
* Remove cxg references
* Remove locust

* missed a spot

* Remove aws secret manager

* Merge branch 'main' into brodgers/2310/code-cleanup-v1

* cleanup merge
 2021-09-17 20:41:12 +00:00
Ben MR
69e159916e [zh2311] Remove auth (#2427) 
* remove auth

* Remove all auth code

zh2311

* lint

* remove auth from e2e tests conf
 2021-09-17 18:47:52 +00:00
Severiano Badajoz
a239d8636d fix: more accurate validation on geneset name (#2429) 2021-09-15 16:40:34 -07:00
Severiano Badajoz
0634160c0c Fix unit tests (#2428) 
* only create toaster if we're on the browser

* drop/fix references to window

* add back fe unit tests
 2021-09-15 00:43:59 +00:00
Severiano Badajoz
01013bcf04 refactor: drop non-session auth from frontend (#2419) 2021-09-14 15:55:46 -07:00
Madison Dunitz
f9c744327a Dunitz/2308-remove hosted (#2399) 
* remove code for and references to czi-hosted

* revert client change
 2021-09-02 13:18:35 -04:00
Severiano Badajoz
780852fd49 docs: release 0.18.0 (#2413) 
* Bump version: 0.17.0 → 0.18.0-rc.0

* Bump version: 0.18.0-rc.0 → 0.18.0
 2021-08-31 15:52:30 -07:00
Colin Megill
de03129061 Spinner on color by geneset when closed (#2412) 
* take 2

* take 2.1

* bruce test

* remove component did mount

* working
 2021-08-27 12:15:47 -07:00
Severiano Badajoz
2715dba703 fix: update/remove deprecated packages (#2411) 
* replace deprecated packages

* more updates
 2021-08-26 15:18:43 -07:00
Bruce Martin
eaae6df5e3 TS Revert (1) (#2402) 
* revert all commits to before Typescript migration

* update compat workflow to match latest deps (#2335)

* update compat workflow to match latest deps

* attempt to debug

* attempt to debug

* remove debugging code

* typo

* update deps to match desktop (#2340)

* fix: don't run lint with `--fix` on push tests (#2273)

* fix: don't run lint with `--fix` on push tests

* npx

Co-authored-by: maniarathi <mani.arathi@gmail.com>
Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com>

* rename X_approx_distribution to X_approximate_distribution (#2337)

* Correctly handle non-finite numbers in heuristic determination of X distribution (#2342)

* handle non-finites explicitly

* improve and test edge case handling for distribution estimation

* revert debugging changes

* code readability

* clean up type inferencing (#2332)

* unit tests for 64 bit conversion

* clean up type handling

* type inference tests

* more type inference fixes

* use schema to determine user intent for data typing

* stop using deprecated API

* fbs type encoding test

* add missing test

* add more tests

* correctly infer X type for CXG adaptor

* lint

* fix typo

* ts migration

* cleanup from PR review

* lint

* PR review changes

* remove unused packages from client (#2359)

* remove unused packages from client

* add missing peer dep

* fix: disable FE auth testing on compatibility tests (#2377)

* update: release process (#2277)

Co-authored-by: maniarathi <mani.arathi@gmail.com>

* fix: remove spaces in param setup (#2380)

* delete deploy workflow (#2396)

* undo reformatting which now does not pass lint

* fix snapshots which changed due to npm dep changes

* add missing quoting to snapshot

* another snapshot typo fix

* TS Revert (2) - replay PR #2347 and #2354 (#2403)

* replay edits from PR 2347

* TS Revert (3) - replay edits in PR #2327 (#2404)

* replay edits in PR 2327

* TS Revert (4) - replay PR #2355 (#2405)

* replay edits in PR 2355

* add additional babel config

* reformat with new prettier config

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
Co-authored-by: maniarathi <mani.arathi@gmail.com>
Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com>
 2021-08-23 15:01:36 -07:00
Mim Hastie
b814489328 Added typings to annoMatrix dir. (#2365) (#2371) 
* Added typings to annoMatrix directory. (#2365)

* Added review point updates. (#2365)

* Fixed viewOf defect. Added review point updates. (#2365)

* Updated test to use Field key interpolation. (#2365)

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>

* Updated test to use Field key interpolation. (#2365)

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>

* Updated test to use Field key interpolation. (#2365)

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>

* Updated test to use Field key interpolation. (#2365)

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>

* Linting. (#2365)

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>

* Simplified while condition in middleware GC. (#2365)

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>

* Reverted embedding.ts prettier to resolve conflict. (#2365)

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
 2021-08-18 13:18:54 -07:00
Severiano Badajoz
08b03ace60 chore: type general utils (#2381) 
* type camera

* type reducer store

* type actionhelpers

* type catchErrorsWrap callsite

* missed camera member var

* type nameCreators

* type makeContinousDimensionName callsite

* type promise limit

* type quantile

* type range

* introduce TypedArray + NumericArray

* type range

* cleanup test

* fix call sites

* type plimit call site

* finish typing camera

* use our TypedArray

* type scientific and sigFig utils and callsites

* simple typings

* type catLabelSort

* type callsite

* type

* callsites

* type camera methods

* swap back to strings, set defaults accordingly

* partially type centroid

* explicit tuple and undefined check

* fix references to this

* call constructor with new and casting

* Revert "introduce TypedArray + NumericArray"

This reverts commit cf21538717.

* explicit tuple

* generics and import fixes

* add unsigned 8 clamped arrray

* back to literals

* use arraytypes

* fix return state

* type more actions

* Update client/src/util/actionHelpers.ts

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>

* properly type dispatch

* properly type thunk

* use new dispatch

* remove nullish coallescer

* use AppDispatch

* generic jsonrequest

* use dispatch again

* lint

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
 2021-08-18 00:15:53 +00:00
Bruce Martin
45cecad76a TS typing for Dataframe (#2382) 
* initial TS typing

* first cut at Dataframe TS typing

* more Dataframe typing

* comments

* more Dataframe cleanup

* PR review fixes and improvements
 2021-08-17 10:43:40 -07:00
Severiano Badajoz
3fdf5cac9d fix: remove spaces in param setup (#2380) 2021-08-13 17:01:10 +00:00
Bruce Martin
4b417cb5a5 undoable TS typing (#2374) 
* type undoable-related TS

* style change to type declaration
 2021-08-12 17:14:09 -07:00
Severiano Badajoz
925b785b1f fix: disable FE auth testing on compatibility tests (#2377) 2021-08-12 18:34:04 +00:00
Bruce Martin
660dff256c add array type foundations (#2376) 2021-08-12 07:17:05 -07:00
Timmy Huang
59c475b821 chore: extract schema types (#2375) 
* chore: extract schema types

* address comments
 2021-08-12 03:12:21 +00:00