Commit Graph

2 Commits

Author SHA1 Message Date
Matt Weiden
546e272a60 Add user-defined category-label colors (#1402)
* Add user-defined category-label colors

Fixes https://github.com/chanzuckerberg/cellxgene/issues/1152

As described in https://github.com/chanzuckerberg/cellxgene/issues/1307

* Respond to feedback from @bkmartinjr in nodejs

* Respond to feedback from @bkmartinjr in python

* Add tests to the server module

* Autoformat python, run linter

* Make colors_get error handling specific

* Respond to feedback from @bkmartinjr

* Respond to feedback from @bkmartinjr

* Fix whitespace

* Fix python lint errrors

* Update documentation

* Add --disable-user-colors option to launch and cxgtool.py

* Fix python formatting

* Rename '--disable-user-colors' to '--disable-custom-colors'
2020-04-26 22:52:57 -07:00
bmccandless
5c0b8c6296 Improve diffexp for tiledb (#1388)
* Improve diffexp for tiledb

- The rows from the A and B sets are gathered and processed at the same time.  In this
  way the matrix is only accessed once instead of twice for each tile.
- There is now a single thread queue that gets shared between all callers of the diffexp.
  This will slow down work if diffexp gets too busy.
- There is a target_workunit amount of work given to each thread.  Previously the
  workunit was (rows selected * width of tile), which could be small.  Now multiple
  column tiles can be combined into one workunit.  If the target is too small then
  thread and other overheads may reduce performance.  If target_workunit is too large
  then the size of the gathered sub matrix may take up too much memory.
- add configuration parameters (max_workers, cpu_multiplier, and  target_workunit)
2020-04-13 18:53:13 -07:00