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717 Commits 22 Branches 50 Tags
3fa888c6d41d5956d4bd260ef3a361f7ee9b2ced
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19 Commits
Author SHA1 Message Date
Colin Megill 3fa888c6d4 user defined gene sets scatterplot, remove works (#556) 2019-01-16 03:37:08 -05:00
Bruce Martin b90447c387 binary wire format with flatbuffers (#509) 
* first flatbuffer schema

* do not lint auto-generated files

* add flatbuffers package

* add flatbuffer module

* wire up /data/X/T route

* use flatbuffers for matrix data fetc

* clarity and comments

* add flatbuffer layout route

* clean up obsolete code

* fix tests

* move flake8 config to setup.cfg

* add comments

* lint

* rework layout routes for fbs

* add more type support to fbs

* lint

* add flatbuffer support for annotations

* function name improvements

* fix botched merge with master

* remove unused import

* route cleanup for flatbuffers

* rename function for clarity

* add missing globals to Jest tests

* fix client JS tests

* fix routes for Python tests

* comments for clarity

* non-finite floating point hardening

* more non-finite number handling

* lint

* fix tests for summarizeAnnotations

* harden diffexp calculation against FP errors

* cleanup unused code

* lint

* add encoding tests for flatbuffers

* application type specified as strings

* fix spelling error

* improve variable names

* add note about documentation gap

* rename FBS DataFrame to Matrix
 2019-01-09 14:26:05 -08:00
Bruce Martin cfcf16aa69 [DO NOT MERGE] performance improvements in color-by feature (#535) 
performance improvements in color-by feature
 2018-12-27 14:05:49 -08:00
Bruce Martin 933fac5fff Allow float64 to down-cast to float32 (#472) 
* warn if annotations will down-cast to float32

* correctly handle falsey data values
 2018-11-27 11:17:30 -08:00
Bruce Martin 00a68276a2 diffexp performance & UX improvements (#431) 
* new diffexp REST API spec

* new diffexp REST API; faster diffexp and dataframe slicing

* first draft of fast diffexp

* convert variance calculation to two-pass method

* lint

* update front-end use of API

* fix typo in spec

* disable content compression

* catch index filter format errors

* clean up of dead code

* resolve PR review comments
 2018-11-14 12:51:24 -08:00
Colin Megill 9decf134e0 fixed scatterplot infinite render (#429) 
* add more to state from componentDidMount

* always brush

* destructure

* move render to function

* fixed scatterplot infinite render

* remove logging
 2018-11-09 20:28:22 -05:00
Colin Megill 0dcc17d6d5 rerender axes on regraph (#403) 
* remove cells loading now that we have toast

* rerender histogram axes

* remove logging
 2018-11-05 09:29:49 -05:00
Colin Megill ed66ae6e4a tooltips, copy, scatterplot tray (#383) 
* tooltips, copy, scatterplot tray

* reset interface

* copy
 2018-10-26 19:21:39 -04:00
Colin Megill 7aa390b5a1 left sidebar improvements (#368) 
* left sidebar improvements

* lint
 2018-10-24 10:21:18 -04:00
Colin Megill df671192be Begin integrating blueprint (#359) 
* toast test

* modify webpack build to allow for global CSS; use CSS modules to scope component styling

* remove heatmap

* add label to index resets

* swapping out buttons for blueprint

* adding constants to globals

* swapping out blueprint buttons

* title position, sidebar improvements

* sidebar styles

* adding toasts for validation errors

* zebra section trial

* integrating blueprint, switching buttons over, breaking out scatter

* clean up console
 2018-10-22 15:46:37 -04:00
Bruce Martin f9f43c42c0 more lint - components (#336) 
* more lint

* fix typo introduced in delinting

* more lint

* remove dead code

* lint fixes

* lint
 2018-10-17 07:17:51 -07:00
Colin Megill 952578680a Remove heatmap, add diffexp info to histograms (#339) 
* Create Release_Validation_Recipe.md

* compose middle ware for redux devtools

* update package.json and lock

* remove heatmap, add to left side bar

* redux devtools extension
 2018-10-16 16:29:20 -07:00
Bruce Martin 6b0aafd27c package dependency cleanup (#330) 
* update npm packages.  babel 7, redux 4, etc

* remove obsolete babel config file

* use correct icons
 2018-10-15 17:36:13 -07:00
Colin Megill 2b77f8146b namespacing 2018-10-15 11:20:52 -07:00
Colin Megill 8d07b400be adding and removing user defined genes 2018-10-15 11:20:52 -07:00
Colin Megill ca35ae0b40 cleanup in histogram 2018-10-15 11:20:52 -07:00
Colin Megill dd1b9229fc access varDataCache with kvCache.get 2018-10-15 11:20:52 -07:00
Colin Megill 8aa75458ed brushable histogram renders genes 2018-10-15 11:20:52 -07:00
Colin Megill b0603dbed7 create dimension for arbitrary gene 2018-10-15 11:20:52 -07:00