fork/cellxgene
1
0
Fork 0
mirror of https://github.com/chanzuckerberg/cellxgene.git synced 2026-09-27 07:28:12 +08:00
Code Issues Packages Projects Releases Wiki Activity
1,466 Commits 22 Branches 50 Tags
7328cbdbd578a133377586e2df2cdca5a41f00d5
Commit Graph
13 Commits
Author SHA1 Message Date
Bruce Martin 1ea2b7fe80 fix for incorrect stats computation in diff exp t-test (#2318) 
* 2211 fixes

* lint

* lint

* add missing test and bug found by test

* change terminology for count distribution

* update scanpy requirement

* update scanpy requirement
 2021-07-23 11:36:26 -07:00
Severiano Badajoz bbf1950624 fix: decrease the topN count explicitly on hosted (#2320) 
* fix: decrease the topN count explicitly on hosted

* lint
 2021-07-21 18:12:10 +00:00
Bruce Martin 0667ad0274 remove experimental reembedding support (#2301) 
* remove experimental reembedding support

* lint

* lint

* add prepare requirements to requirements-dev

* oops, revert accidental deletion of import

* more test modifications

* remove obsolete unit tests
 2021-07-15 13:55:26 -07:00
Bruce Martin e334fbe96e remove experimental ontology support (#2300) 
* remove experimental ontology support

* lint

* remove ontologies from unit tests

* additional test changes
 2021-07-14 07:23:38 -07:00
Severiano Badajoz 5f976cc4fc fix: convert sparse numpy matrix to ndarray (#2271) 2021-07-06 21:04:50 +00:00
Madison Dunitz 5007d307a2 Dunitz/czi hosted test server (#2254) 
update hosted unit tests to use wsgi server instead of cellxgene packages
 2021-06-30 15:07:54 -07:00
Severiano BadajozMadison DunitzMadison Dunitz
 		28b526b3fc feat: diffexp returns two genesets (#2230) 
* feat: return two lists for diffexp (#2221)

* sp

* split out derive sort order, tests passing

* sp

* return diff exp results in two lists

* update

* copy implementation over to desktop

* add tests for two lists

* small fixes to complete backend implementation

* accept new diffexp response

* map diff exp response to genesets

* delete )

* name diffexp genesets with population names

* take constants out of state and allow width prop to override

* shorten mini-histo properly truncate and resize depending on expansion

* prepend new genesets

* rename data within diffexp action

* backend

* move diffexp ttest to common code module, update tests

* update for unit tests

* reference actual var

Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com>
Co-authored-by: Madison Dunitz <dunitzm@gmail.com>
 2021-06-08 21:02:19 +00:00
maniarathi 59ec3afbb9 Pin versions of flatbuffer and Flask to be less than 2.0 (#2199) 2021-05-12 15:13:10 -07:00
Madison Dunitz 4666f1f044 add rule for static assest without dataset id (#2194) 2021-05-07 21:17:31 -07:00
Bruce Martin f2e9aecebe hosted gene sets routes, plus a few bug fixes (#2155) 
* first cut at hosted gs routes

* lint

* update tests to match csv parser changes

* update tests to new API

* update gene set name validation rules to match requirements

* add path mapping from dataset to geneset

* add test cases for geneset GET route

* fix test assertion

* remove debugging code

* update gene set uri mapping function

* fix error message

* allow extra user-specified headers in gene set csv file

* clarify comment
 2021-04-27 13:58:58 -07:00
maniarathi ebeb1c8818 Fix command to EB to use the artifact.zip file during deployment instead of the source code in the directory. (#2174) 2021-04-23 11:07:57 -07:00
Madison Dunitz ae23c9e5b9 white space change to run tests (#2132) 
* update tiledb reqs
 2021-03-30 14:34:39 -05:00
Madison Dunitz 78c9d24ed4 Refactor czi_hosted and server into backend directory, pull common code into backend/common, refactor tests (#2102) 
* move local_server -> backend/server server-> backend/czi_hosted, pull common code into backend/common update imports, tests and make commands
 2021-03-26 00:27:07 -05:00