5 Commits

Include renames

Author	SHA1	Message	Date
Colin Megillandbkmartinjr	876ceb4d8b	Create / edit geneset description (#2139) ... * geneset description add * edit geneset description * default state for desc * remove log * naming, todo * check for both dup name and desc * fixes * do not store gene set modal state in history stack * Update createGenesetDialogue.js * Update editGenesetNameDialogue.js Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>	2021-04-21 19:50:29 -04:00
3 people	e6e358ddc8	Gene sets UI, right sidebar refactor (#2097) ... * prototyping * render histos on open gene set * prototyping * render histos on open gene set * factor out add genes to own component * remove unused import * mock reducer * color by geneset stub * menus and buttons * geneset dialogue stub * remove heatmap mock * componetize histogram * reenable add genes * re-add isuserdefined * test data * remove have fetched * add isExpanded state to gene, and pass to histogram * expand button * toggleable * mini * bump number of genes to 50 * don't clear diffexp on subset * move create category to top * render diffexp as geneset * geneset show mean expression * gene set reducer * add geneset UI reducer * wire e2e gene set loading prototype * fix sniffing bug * fix typo * add gene modals * client/src/actions/ * add autosave * rename data-dir cli param * add geneset, add gene, delete set * prototype: remove csv upload placeholder * handle delete gene from set * prepopulate geneset with genes from modal * add geneset: rename action * icons, language consistency * chevron after * handle empty string case on genes for create geneset * edit geneset * fix language on create * copy correction * add popper2 upgrade react popper upgrade react popper adding popover2 package * truncate uses tooltip2 * gene set button text typo * remove logging * moving server over * remove test imports * don't try to destructure map, use array.from * fix add gene map datastructure error * Revert "fix add gene map datastructure error" This reverts commit b0eed45952. * name --> genesetName, genes --> geneSymbols * add gene to geneset, temporary format * handle empty case, clear form input * lint -- genesets wasn't passed via props * userinfo * move genes string to object conversion to action * remove tmp gene description * emptystring default for description * remove empty string * remove top level package json * remove package lock as well * remove flag for feature toggle * remove comments in geneset * comment cleanup * remove comment * revert diffexp genes to 10 * color by gene set * disable color by gene set * Gene menus are now inline, remove dead prototype code * remove todo, magic number to variable * remove jshint in rightsidebar Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com> * remove unused geneset validation code * tmp format pending geneset description * move magic number into variable * reorganize genesetsUI reducer pending tests * rewire edit given new action name * add basic validation and feedback for geneset name uniqueness * mv annoDialog * mv label, repair paths * Update client/src/components/brushableHistogram/header.js Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com> * add imports for icon in histo * update jest snapshots given blueprint/tooltip2 usage of index -1 * ensure no empty paragraph * intent from blueprint * remove remainder of jshint references * do not push undo when autosave fires * fix autosave bugs * remove todos * clamp to util * scient to util * revert clearing diffexp * rename value to be more specific stacked bar * clean up logging and commetns * remove gene entry tests pending rewrite * tab index -1 * update jest snapshot, blueprint tooltip 2 * caret margin * snapshot update * ensure histogram is centered * add geneset actions to config * comment maybeScientific * comment clamp * comment ui reducer * remove prototype code * remove error log * remove references to bl.ocks * componetize parseBulkGeneString * catch case where geneset rename same name * genesetui reducer tests * add geneset ui to index reducer config Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com> Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>	2021-03-24 16:33:26 -04:00
Bruce Martin	b00496198d	wire up geneset reducer (#2082) ... * first cut at GET /genesets route * update existing tests to match code changes * more GET /genesets and initial tests * add missing test fixture * geneset validation accepts OTA format * genesets route: better error handling, more tests * lint * genesets reducer and initial load * fix lint * add autosave support for genesets * remove debug logging * fix typo * fix another typo * update smoke test config for genesets * smoke test fixes * more fiddling with smoke tests	2021-03-02 12:12:58 -08:00
Severiano Badajoz	6cccc41c0f	run prettier(2.0.5) (#1438)	2020-05-04 10:26:42 -07:00
Bruce Martin	7ef5203564	Undo/redo (#659) ... * immutable crossfilter * first cut at reducer refactor with cascade model * add initial redo/undo implementation * small optimization * integrate expression with history * add tests for new reducers and fix a couple of small initialization bugs * treat tiny lasso selections as a clear * better function name for clarity * fix undo for differential expression * remove logging * fix regression due to bad merge * cleanup and comments for clarity * improve undoable configuration for flexibility * fix stale comments * remove debugging code from production build * rename categoricalSelectionState * rename file * improve comments	2019-03-22 14:53:48 -07:00