* add opacity change on selection state
* change overlay z-index to capture pointer
* https://www.youtube.com/watch?v=xrg-RgF5F8o
* render null if no coloring by continuous
* run lint on push + pr
* revert commit
wrong branch
* add case to removing labels
* add disabled state to centroid button
* fix centroid test button clicking order
* don't accidentally un-toggle first color
* run eslint --fix
* camelcase
* camelCase config part 1
* part 2
* part 3 - removing subscripts
* fix "class-methods-use-this"
* fix "class-methods-use-this"
* fix eslint ignores
* add eslint ignore for set state in update
* reformat comments to appease eslint
* add a11y features
* sort-comp fix
* a11y fix
* add ignore for set state in update
* add a11y htmlFor
* remove unused toast
* remove unnecessary bind
* add ignore for set state in update
* add rel="noopener noreferrer"
Using target="_blank" without rel="noopener noreferrer" is a security risk: see https://mathiasbynens.github.io/rel-noopener
* use arrow function to bind
* remove unused definitions/declarations
* prettier
* remove unused state
* add comments to empty catch blocks remove curly brackets
* escape '
* use eqeqeq
* switch from default export
* remove ignore log
* remove static
* fix import
* revert subscripting config
* clean-up
* remove unnecessary subscript
* fix new errors from master
* change category click handler to a class property
* fix camelcase changes that slipped by
* unused import
* Fix newly introduced ESLint errors from addGenes
* Refactor CSS layout and react logic for layout
Fixes https://github.com/chanzuckerberg/cellxgene/issues/1022
* Menubar should wrap inside middle pane instead of overlapping left
sidebar when window is scrunched
* cellxgene should have a minimum width of 1240px
1. Replace absolute positioning and dimension calculation with css grid
2. Use flexbox for wrapping menubar buttons
* Middle pane (graph) can calculate its own size
* Removing components calculating their size/position relative to
eachother increases modularity, decreases use of global variables
* Improved some scrollbar behavior
* Removed responsive reducer, propagating window size to components
triggers unnecessary events and encourages breaking modularity; doing
this made some components state agnostic
Reference: https://css-tricks.com/snippets/css/complete-guide-grid/
* Reposition the continuous legend
* Small fixes
* Respond to feedback from @colinmegill
* Respond to feedback from @colinmegill
Add more documentation on the renderGraph method.
Fixes https://github.com/chanzuckerberg/cellxgene/issues/1433
When selection is deselected the world is reset to the universe the
crossfilter is reset to that in the resetCache, including the embeddings
in the layout_XY dim. However, the embedding selection stays the same.
If the embedding selected is not the default, the embedding shown to the
user will be different than the embedding layout_XY in the crossfilter,
causing lasso selections to be made against the wrong embedding
coordinates
* Add user-defined category-label colors
Fixes https://github.com/chanzuckerberg/cellxgene/issues/1152
As described in https://github.com/chanzuckerberg/cellxgene/issues/1307
* Respond to feedback from @bkmartinjr in nodejs
* Respond to feedback from @bkmartinjr in python
* Add tests to the server module
* Autoformat python, run linter
* Make colors_get error handling specific
* Respond to feedback from @bkmartinjr
* Respond to feedback from @bkmartinjr
* Fix whitespace
* Fix python lint errrors
* Update documentation
* Add --disable-user-colors option to launch and cxgtool.py
* Fix python formatting
* Rename '--disable-user-colors' to '--disable-custom-colors'
* warning on maxCount for diffexp
* cleanup logging
* clarification
* make the limits configurable
* make diff exp limit work
* danger!
* remove debugging code
* fix merge with master
* fix unit tests
Co-authored-by: Colin Megill <colinmegill@gmail.com>
Fixes https://github.com/chanzuckerberg/cellxgene/issues/1349
For more information see https://github.com/d3/d3-format
Note that does not _fully_ fix the issue described in #1349, but rather
makes the formatting issue far less likely. It is _still_ possible for
this to occur if the difference between two ticks in axes happes in the
a significant digit cropped by the scientific notation format
* Add color mapping to the bar chart.
* Change histogram color generation from Viridis to InterpolateCool.
* Coloring of Histrogram based up the x axis instead of y axis.
Coloring of Histrogram based up the x axis instead of y axis.
* Respond to feedback from @colinmegill
* Only color histograms that are selected for colorby
* Add some small refactors to BrushableHistogram's componentDidUpdate
* Fix histogram coloring and binning
* Reuse binning functions from util/dataframe/histogram.js; this fixes
an issue with there being near-zero width bins
* Fix color mapping so that it matches the scale in the legend
* Do not attempt to plot bins if the calculated binWidth is zero; this
can happen if all values are the same
* Refactor the function that draws the histogram a bit
* Respond to feedback from @bkmartinjr
Co-authored-by: Donald Paul Herman <Donaldpherman@hotmail.com>
* maybe truncate string
* add string formatting to test
* correct import
* destructuring
* add maxlength
* test
* Respond to feedback from @bkmartinjr
Co-authored-by: Matt Weiden <538456+mweiden@users.noreply.github.com>
