Commit Graph
28 Commits
Author SHA1 Message Date
Bruce Martin 846b8d15bd lodash cleanup (#747)
* add own range() function

* lodash cleanup

* remove redundant fill range implementations

* remove use of _.get

* sync test babel config with build

* update tests to match new range implementation
2019-05-06 20:28:32 -04:00
Charlotte Weaver 5d4b11d287 Better smoke tests (#669) 2019-03-28 16:47:42 -07:00
Bruce Martin 7ef5203564 Undo/redo (#659)
* immutable crossfilter

* first cut at reducer refactor with cascade model

* add initial redo/undo implementation

* small optimization

* integrate expression with history

* add tests for new reducers and fix a couple of small initialization bugs

* treat tiny lasso selections as a clear

* better function name for clarity

* fix undo for differential expression

* remove logging

* fix regression due to bad merge

* cleanup and comments for clarity

* improve undoable configuration for flexibility

* fix stale comments

* remove debugging code from production build

* rename categoricalSelectionState

* rename file

* improve comments
2019-03-22 14:53:48 -07:00
Bruce Martin aa5ce4a2f1 correctly toggle group selection in categorical metadata (#640) 2019-03-12 10:49:29 -07:00
Bruce Martin caaee7e9bf do not reset color-by when subsetting world (#636)
* do not reset colors when subsetting to world

* revert diffexp state change
2019-03-12 10:48:35 -07:00
Colin Megill 8795f0f32c Add test ids and classes (#633)
* data test ids and classes

* suggest
2019-03-07 13:01:41 -08:00
Bruce Martin 6b33315cbe Dataframe (#576)
* initial dataframe commit

* initial dataframe port of core app

* rename variables for clarity

* remove unused import

* comment out unused code

* fix array handling bug in crossfilter dimension creation

* allow creation of empty dataframes

* handle non-existent columns

* handle non-existent columns

* revise tests for new dataframe

* comments for clarity

* comments for clarity

* generate bulk add placeholder with real gene names

* fix bug in gene name adding

* more dataframe unit tests

* fix bug - subset from current world, not universe

* put cut and pasted code into a single function

* improve caching of crossfilter

* remove cascading update bug from graph

* more performance work

* improve state handling for scatterplot

* performance optimization of critical path

* add column summarization

* dataframe utils

* add callOnceLazy

* fix tests

* minor updates found during review

* fix misspelling

* remove RESTv02 from function names

* comment cleanup

* cut/icut col parameter defaults to null

* break up large test

* improve tests and comments on dataframe at/has functions
2019-02-22 11:31:34 -08:00
Colin Megill 0ef6c36f4c Cluster Occupancy (n dim cube) (#513)
* create occupancy component

* occupancy working

* centering, width, flex spacing

* add is-number

* extend sort to cover string + int

* proof of concept sorted occupancy

* handle undefined occupancy entry, cleanup

* only render occupancy when colorby is cat

* cleanup unused vars

* cleanup
2018-12-17 14:19:48 -05:00
Bruce Martin 296ed752fa Improved summary counts of annotation values (#478)
* convert annotation summary to a Map

* add 2d annotation count summary

* add memoization on 2D annotation counting

* add tests for annotation summarization

* fix import/exports

* rename WorldOps to WorldUtil

* rename WorldOps to WorldUtil

* add comment
2018-12-03 09:15:03 -08:00
Bruce Martin 138d30909a improve type handling for non-string annotation data (#465)
* improve type handling for non-string annotation data

* improve clarity of code
2018-11-26 10:32:29 -08:00
Colin Megill ef80c8df2a Change color scales to rainbow (#449)
* rainbow

* eslint

* remove comments
2018-11-15 18:17:55 -08:00
Bruce Martin bc15e9229f update config params to match REST API spec (#393) 2018-10-30 11:03:40 -07:00
Colin Megill ed66ae6e4a tooltips, copy, scatterplot tray (#383)
* tooltips, copy, scatterplot tray

* reset interface

* copy
2018-10-26 19:21:39 -04:00
Colin Megill 7aa390b5a1 left sidebar improvements (#368)
* left sidebar improvements

* lint
2018-10-24 10:21:18 -04:00
Colin Megill 96675f806c hotfix duplicate globals declaration 2018-10-22 16:39:41 -04:00
Colin Megill df671192be Begin integrating blueprint (#359)
* toast test

* modify webpack build to allow for global CSS; use CSS modules to scope component styling

* remove heatmap

* add label to index resets

* swapping out buttons for blueprint

* adding constants to globals

* swapping out blueprint buttons

* title position, sidebar improvements

* sidebar styles

* adding toasts for validation errors

* zebra section trial

* integrating blueprint, switching buttons over, breaking out scatter

* clean up console
2018-10-22 15:46:37 -04:00
Bruce Martin 0c271bc815 categorical metadata performance work (#356)
* do not create unecessary option state for categories we will not display

* performance improvements for categorical metadata handling
2018-10-22 09:56:41 -07:00
Bruce Martin 5dea303bcd handle case of excessively large number of options in categorical met… (#350)
* handle case of excessively large number of options in categorical metadata
* move max category options count into globals
2018-10-18 18:07:39 -07:00
Bruce Martin f9f43c42c0 more lint - components (#336)
* more lint

* fix typo introduced in delinting

* more lint

* remove dead code

* lint fixes

* lint
2018-10-17 07:17:51 -07:00
Colin Megill 952578680a Remove heatmap, add diffexp info to histograms (#339)
* Create Release_Validation_Recipe.md

* compose middle ware for redux devtools

* update package.json and lock

* remove heatmap, add to left side bar

* redux devtools extension
2018-10-16 16:29:20 -07:00
Bruce Martin 6b0aafd27c package dependency cleanup (#330)
* update npm packages.  babel 7, redux 4, etc

* remove obsolete babel config file

* use correct icons
2018-10-15 17:36:13 -07:00
Colin Megill 5165297e2a position tweak 2018-10-15 11:20:52 -07:00
bkmartinjr d9a75fcd10 more linting 2018-09-19 10:30:14 -04:00
Bruce Martin d4e850d18f #130 redux refactor (#208)
* mocks for redux refactor - for discussion

* more API design on redux refactor

* add new reuqired dependencies for build

* change babel target to use modern browser

* remove dead code

* remove dead code - joy plots

* checkpoint on redux refactoring

* checkpoint on redux refactoring

* fix mistaken rebase conflict resolution

* dead code removal; add name to dataframe backmap

* rename dataframe to universe

* update eslint config to more closely match prettier

* lint

* more eslint updates to match prettier

* additional config to make eslint match prettier

* add expression data to Universe/World

* remove obsolete reducers

* lint fixes

* more eslint cleanup

* lint

* lint

* fix but in countAllOnes when dimensions gt 1

* lint; do not display name metadata field

* lint; colors refactor

* lint; colors refactor

* update comments

* first cut at regraph and reset

* enable object-curly-braces consistent mode

* lint, handle regraph with no selection

* fix expression scatterplot bugs

* fix regression legend display

* add expression data cache

* remove console logging

* reset cell color on regraph/reset

* remove obsolete server URLs

* rename UniverseV01 to Universe_REST_API_v01

* add additional comments on the varDataCache

* merge universe reducer into controls reducer; simplify initialization-related actions

* use spread operator

* fix erroneous comment

* convert universe and world state to plain objects, and functionalize supporting code (remove ES6 classes)

* use spread operator

* lint

* improve variable names

* rename obsCrossfilter to crossfilter and obsDimensionMap to dimensionMap

* rename controls2 to controls
2018-09-17 20:43:39 -07:00
bkmartinjr ff07bb1ebb fix for _.get typo 2018-08-04 15:14:40 -07:00
Colin Megill b574542a60 _.get fixes 2018-07-23 17:06:32 -04:00
Charlotte Weaver 85506db971 Updating to latest cellxgene client code
Fixes the build error in the old version. 

Reverted the API version since we changed directions from updating the API to refactoring the server structure instead.
2018-07-05 13:37:26 -07:00
Charlotte Weaver dd5fa57259 renaming backend, cellxgene to server, client respectively 2018-06-26 11:41:32 -07:00