Commit Graph
7 Commits
Author SHA1 Message Date
934cc5c69b TS migration. #2288. (#2328)
* Added TS. Updated build and linting config. Added types.

* [ts-migrate][.] Rename files from JS/JSX to TS/TSX

Co-authored-by: ts-migrate <>

* [ts-migrate][.] Run TS Migrate

Co-authored-by: ts-migrate <>

* Corrected files mangled by ts-migrate.

* Updated lint config, minor linting.

* Re-enabled Husky.

* Updated tests and config.

* Reverted webpack devtool config.

* Removed obsolete snapshots.

* Added annotations snap.

* Updated tsconfig includes wrt linting.

* Removed ts-migrate.

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
2021-07-26 20:18:17 +00:00
e6e358ddc8 Gene sets UI, right sidebar refactor (#2097)
* prototyping

* render histos on open gene set

* prototyping

* render histos on open gene set

* factor out add genes to own component

* remove unused import

* mock reducer

* color by geneset stub

* menus and buttons

* geneset dialogue stub

* remove heatmap mock

* componetize histogram

* reenable add genes

* re-add isuserdefined

* test data

* remove have fetched

* add isExpanded state to gene, and pass to histogram

* expand button

* toggleable

* mini

* bump number of genes to 50

* don't clear diffexp on subset

* move create category to top

* render diffexp as geneset

* geneset show mean expression

* gene set reducer

* add geneset UI reducer

* wire e2e gene set loading prototype

* fix sniffing bug

* fix typo

* add gene modals

* client/src/actions/

* add autosave

* rename data-dir cli param

* add geneset, add gene, delete set

* prototype: remove csv upload placeholder

* handle delete gene from set

* prepopulate geneset with genes from modal

* add geneset: rename action

* icons, language consistency

* chevron after

* handle empty string case on genes for create geneset

* edit geneset

* fix language on create

* copy correction

* add popper2
upgrade react popper
upgrade react popper
adding popover2 package

* truncate uses tooltip2

* gene set button text typo

* remove logging

* moving server over

* remove test imports

* don't try to destructure map, use array.from

* fix add gene map datastructure error

* Revert "fix add gene map datastructure error"

This reverts commit b0eed45952.

* name --> genesetName, genes --> geneSymbols

* add gene to geneset, temporary format

* handle empty case, clear form input

* lint -- genesets wasn't passed via props

* userinfo

* move genes string to object conversion to action

* remove tmp gene description

* emptystring default for description

* remove empty string

* remove top level package json

* remove package lock as well

* remove flag for feature toggle

* remove comments in geneset

* comment cleanup

* remove comment

* revert diffexp genes to 10

* color by gene set

* disable color by gene set

* Gene menus are now inline, remove dead prototype code

* remove todo, magic number to variable

* remove jshint in rightsidebar

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>

* remove unused geneset validation code

* tmp format pending geneset description

* move magic number into variable

* reorganize genesetsUI reducer pending tests

* rewire edit given new action name

* add basic validation and feedback for geneset name uniqueness

* mv annoDialog

* mv label, repair paths

* Update client/src/components/brushableHistogram/header.js

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>

* add imports for icon in histo

* update jest snapshots given blueprint/tooltip2 usage of index -1

* ensure no empty paragraph

* intent from blueprint

* remove remainder of jshint references

* do not push undo when autosave fires

* fix autosave bugs

* remove todos

* clamp to util

* scient to util

* revert clearing diffexp

* rename value to be more specific stacked bar

* clean up logging and commetns

* remove gene entry tests pending rewrite

* tab index -1

* update jest snapshot, blueprint tooltip 2

* caret margin

* snapshot update

* ensure histogram is centered

* add geneset actions to config

* comment maybeScientific

* comment clamp

* comment ui reducer

* remove prototype code

* remove error log

* remove references to bl.ocks

* componetize parseBulkGeneString

* catch case where geneset rename same name

* genesetui reducer tests

* add geneset ui to index reducer config

Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
2021-03-24 16:33:26 -04:00
Severiano Badajoz 271e7a1e76 Fix prettier related ESLint issues (#1493)
* add quotes

* add prettier dev-dep

* run prettier on src

* add eslint-prettier-plugin to install
2020-05-26 09:33:59 -07:00
Matt Weiden 888f730526 Refactor CSS and React logic for layout (#1424)
* Refactor CSS layout and react logic for layout

Fixes https://github.com/chanzuckerberg/cellxgene/issues/1022

* Menubar should wrap inside middle pane instead of overlapping left
  sidebar when window is scrunched
* cellxgene should have a minimum width of 1240px

1. Replace absolute positioning and dimension calculation with css grid
2. Use flexbox for wrapping menubar buttons

* Middle pane (graph) can calculate its own size
* Removing components calculating their size/position relative to
  eachother increases modularity, decreases use of global variables
* Improved some scrollbar behavior
* Removed responsive reducer, propagating window size to components
  triggers unnecessary events and encourages breaking modularity; doing
  this made some components state agnostic

Reference: https://css-tricks.com/snippets/css/complete-guide-grid/

* Reposition the continuous legend

* Small fixes

* Respond to feedback from @colinmegill

* Respond to feedback from @colinmegill

Add more documentation on the renderGraph method.
2020-05-06 13:46:13 -07:00
Severiano Badajoz 6cccc41c0f run prettier(2.0.5) (#1438) 2020-05-04 10:26:42 -07:00
Bruce Martin ee62dd355f [WIP] JS lint and dead code removal (#1053)
* lint and dead code removal

* fix regressions
2019-11-21 14:10:02 -08:00
Colin Megill 4c3d783fc8 Continuous data in right sidebar (#985)
* Create right sidebar files, move histos over

* restructure continuous legend + all padding

* right sidebar file

* proper graph positioning and resize

* new lasso values since right sidebar

* fix autosave position
2019-11-05 20:29:21 -05:00