Commit Graph
3 Commits
Author SHA1 Message Date
Bruce Martin 144b19c449 experimental re-embedding (#1186)
* first cut at re-embedding route and back-end support

* update and expand config route tests

* add scanpy_umap

* add reembedding to config route parameters

* front-end support for reembedding fetch and UI

* remove unused imports

* add loading state

* save reembedding in reducer state

* improve withColsFrom

* transmit reembed schema to client; pick unique embedding names

* display embeddings

* format

* lint

* spaces, tab size 2

* lint

* test hack for smoke-test race

* back out hack sleep

* add check for backed mode

* add unit test for reembedding

* lint

* hide re-embedding CLI param from help
2020-03-09 16:53:30 -07:00
Matt Weiden bddf66d62a Use blueprint "disable" property to indicate disabled buttons (#1197)
* Use blueprint "disable" property to indicate that colorby disabled

* Disable subset and reset buttons when action is not possible
2020-03-05 09:46:41 -08:00
Matt Weiden 05323ae643 Undo selection appends genes from differential expression to user gene list (#1183)
* Undo selection appends diffExp genes to user gene list

Fixes https://github.com/chanzuckerberg/cellxgene/issues/1171

Need: When a user performs a differential expression from within
a sub-selection (world) of the data and then resets the selection to all
cells (universe), the differential expression results are no longer
valid.

Approach:
* When the selection is reset, move the top (maxUserDefinedGenes
- len(userDefinedGenes) from the differential expression results to the
list of user defined genes
* Raise maxUserDefinedGenes to 25 to give users more room and
accommodate the extra genes transferred in from differential expression

Other commits:
* Choose different button icons
* Add diff exp genes to user defined genes on subset too
* Respond to feedback from @liaprins-czi and @bkmartinjr
2020-03-02 12:07:12 -08:00