fork/cellxgene
1
0
Fork 0
mirror of https://github.com/chanzuckerberg/cellxgene.git synced 2026-09-23 05:28:11 +08:00
Code Issues Packages Projects Releases Wiki Activity
728 Commits 22 Branches 50 Tags
ad9be3cdd72f5e6b096bfaeb34190846bf902fe7
Commit Graph
9 Commits
Author SHA1 Message Date
Bruce Martin b90447c387 binary wire format with flatbuffers (#509) 
* first flatbuffer schema

* do not lint auto-generated files

* add flatbuffers package

* add flatbuffer module

* wire up /data/X/T route

* use flatbuffers for matrix data fetc

* clarity and comments

* add flatbuffer layout route

* clean up obsolete code

* fix tests

* move flake8 config to setup.cfg

* add comments

* lint

* rework layout routes for fbs

* add more type support to fbs

* lint

* add flatbuffer support for annotations

* function name improvements

* fix botched merge with master

* remove unused import

* route cleanup for flatbuffers

* rename function for clarity

* add missing globals to Jest tests

* fix client JS tests

* fix routes for Python tests

* comments for clarity

* non-finite floating point hardening

* more non-finite number handling

* lint

* fix tests for summarizeAnnotations

* harden diffexp calculation against FP errors

* cleanup unused code

* lint

* add encoding tests for flatbuffers

* application type specified as strings

* fix spelling error

* improve variable names

* add note about documentation gap

* rename FBS DataFrame to Matrix
 2019-01-09 14:26:05 -08:00
Bruce Martin 296ed752fa Improved summary counts of annotation values (#478) 
* convert annotation summary to a Map

* add 2d annotation count summary

* add memoization on 2D annotation counting

* add tests for annotation summarization

* fix import/exports

* rename WorldOps to WorldUtil

* rename WorldOps to WorldUtil

* add comment
 2018-12-03 09:15:03 -08:00
Bruce Martin 2d5bc9d0c9 Performance work, plus fix #405 (#406) 
* remove memoization

* update to flash 1.0.2; turn on threading

* stand-alone helper routines for array slicing

* fix issue #405

* reset diffexp state when world changes

* performance work in dimension creation; fix world slicing bug

* update tests to match new state mgmt api

* update flask

* do not make dimensions for useless annotations

* update test to match optimizations
 2018-11-05 13:57:58 -08:00
Colin Megill d221d76be6 test for world, graph border, legend label (#378) 
* test for world, graph border, legend label

* typo
 2018-10-25 12:16:55 -04:00
Bruce Martin 0c271bc815 categorical metadata performance work (#356) 
* do not create unecessary option state for categories we will not display

* performance improvements for categorical metadata handling
 2018-10-22 09:56:41 -07:00
Bruce Martin 2616b5c185 finish tests for world (#340) 
* Create Release_Validation_Recipe.md

* nameCreators test and better error handling

* add test for createObsDimensionMap

* add last set of tests for world module
 2018-10-18 09:54:57 -07:00
Colin Megill 65f5244ff7 add name getter to world test 2018-10-15 11:20:52 -07:00
Bruce Martin b77d7b14b5 bkmartinjr/world tests (#306) 
First cut at test for stateManager/world. Test data for REST responses factored out into separate file for shared use by Universe and World tests. Also cleaned up some debugging code.
 2018-10-10 18:05:19 -07:00
Bruce Martin 19f2728a18 Bkmartinjr/state mgr tests (#298) 
Jest tests for part of util/stateManager

* reorganize test directories

* lint

* add Jest config to eslint

* add Jest config to eslint

* lint

* fix babel configuration for tests

* start at kvCache tests

* reorganize test directories

* lint

* add Jest config to eslint

* add Jest config to eslint

* lint

* fix babel configuration for tests

* start at kvCache tests

* fix cache flush bug manifest by new test cases

* new kvCache tests

* skeletal universe test

* fix race in test case

* more universe test cases
 2018-10-04 17:41:26 -07:00