3 Commits

Author	SHA1	Message	Date
Charlotte Weaver	83154577e4	Black -- formatter for python (#508) ... * Add black * use black to format code * Black version	2018-12-12 09:44:47 -08:00
Bruce Martin	141f802824	differential expression improvements (#452) ... * add cutoff for low expression genes in topN selection * remove debugging printfs * change cli param name for diffexp cutoff * change CLI param name * second try at diffexp - using lfc sort with pval cutoff * use lfc cutoff * update comments to match code; cap p-value adjustment to max of 1 * lint * explain diffexp in readme * add link * add diffexp-lfc-cutoff to test config * update test to match revised diffexp spec * fix latent bug in GET arg handling that was breaking tests * lint * comment cleanup * fix variance overestimation so it is symmetric * lint	2018-11-16 14:44:56 -08:00
Bruce Martin	00a68276a2	diffexp performance & UX improvements (#431) ... * new diffexp REST API spec * new diffexp REST API; faster diffexp and dataframe slicing * first draft of fast diffexp * convert variance calculation to two-pass method * lint * update front-end use of API * fix typo in spec * disable content compression * catch index filter format errors * clean up of dead code * resolve PR review comments	2018-11-14 12:51:24 -08:00