Commit Graph

7 Commits

Author SHA1 Message Date
bmccandless
b9e132a00c Updates due dependency version changes. (#1960)
* Updates due dependency version changes.

h5py recently changes and now values once returned as str are now returned as bytes.
This would have caused a much larger change, so instead the version is restricted to <3.0.0.

This caused the bulk of the testing failues.
A few other changes were needed to make a few other tests pass.

 #1959
2020-11-01 12:36:38 -08:00
Madison Dunitz
af3c6e1d8e config refactor (#1854)
* split out config

* add tests for base and app config, refactor client config out of app config

* refactor default config retrieval

* create config test class and helper functions

* move default_config into server to fix import issue
2020-09-29 16:42:46 -05:00
Madison Dunitz
65ea1b673f Dunitz 1685 hosted annotations (#1789)
* save tiledb array to s3, dont cache user annotations

* Add option to disable annotation filename prompt (#1787)

Co-authored-by: Madison Dunitz <dunitzm@gmail.com>

* set tiledb default context in cxg_adaptor

Co-authored-by: maniarathi <arathi.mani@chanzuckerberg.com>
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
2020-08-24 18:26:08 -05:00
maniarathi
a5c9ffa880 When reading annotations from tiledb, check if the values are byte literals and if so, decode them. Also pin s3f3 to 0.4.2. (#1788) 2020-08-22 09:42:11 -07:00
maniarathi
994c20c094 Move cxgtool into CLI and modularize conversion functions (#1701) 2020-08-17 17:28:29 -07:00
maniarathi
508889f74b Refactoring cxg utility classes in preparation for CXG conversion tooling (#1739) 2020-08-14 16:51:13 -07:00
Madison Dunitz
2689d8d2c0 Create hosted user annotations [1685] (#1726)
* add function to retrieve latest annotation from db, db updates

* read and write tiledb arrays

* adding tests
2020-08-13 19:07:17 -05:00