Commit Graph
6 Commits
Author SHA1 Message Date
Marcus Kinsella 46d02b1987 Handle schema v1.1.0 (#2002)
Correctly display datasets that follow schema version 1.1.0
2020-12-14 15:20:29 -08:00
Marcus Kinsella e892e64685 Convert HGNC ids to their symbol (#1972)
There are entries in some var indexes like HGNC:18790. We'd like to convert that to its symbol, NSG1.
2020-11-06 09:27:49 -08:00
Marcus Kinsella 78176f9711 Add schema subcommand (#1939)
Add the `cellxgene schema apply` and `cellxgene schema validate` subcommands.

The first takes an h5ad file and a yaml with config information and produces a new h5ad that follows the cellxgene data integration schema.

The second takes an h5ad and checks if it follows the schema version written into its metadata.

Both are currently marked as "experimental" as the primary intended users are still at CZI.
2020-11-02 08:26:37 -08:00
Madison Dunitz af3c6e1d8e config refactor (#1854)
* split out config

* add tests for base and app config, refactor client config out of app config

* refactor default config retrieval

* create config test class and helper functions

* move default_config into server to fix import issue
2020-09-29 16:42:46 -05:00
maniarathi 994c20c094 Move cxgtool into CLI and modularize conversion functions (#1701) 2020-08-17 17:28:29 -07:00
maniarathi cdae4f9f10 Reorganize the server testing directory (#1705) 2020-08-05 08:31:02 -07:00