cellxgene

fork/cellxgene

Fork 0

mirror of https://github.com/chanzuckerberg/cellxgene.git synced 2026-09-21 13:28:12 +08:00

Commit Graph

Author	SHA1	Message	Date
Marcus Kinsella	e892e64685	Convert HGNC ids to their symbol (#1972 ) There are entries in some var indexes like HGNC:18790. We'd like to convert that to its symbol, NSG1.	2020-11-06 09:27:49 -08:00
Marcus Kinsella	78176f9711	Add schema subcommand (#1939 ) Add the `cellxgene schema apply` and `cellxgene schema validate` subcommands. The first takes an h5ad file and a yaml with config information and produces a new h5ad that follows the cellxgene data integration schema. The second takes an h5ad and checks if it follows the schema version written into its metadata. Both are currently marked as "experimental" as the primary intended users are still at CZI.	2020-11-02 08:26:37 -08:00

Author

SHA1

Message

Date

Marcus Kinsella

e892e64685

Convert HGNC ids to their symbol (#1972 )

There are entries in some var indexes like HGNC:18790. We'd like to convert that to its symbol, NSG1.

2020-11-06 09:27:49 -08:00

Marcus Kinsella

78176f9711

Add schema subcommand (#1939 )

Add the `cellxgene schema apply` and `cellxgene schema validate` subcommands.

The first takes an h5ad file and a yaml with config information and produces a new h5ad that follows the cellxgene data integration schema.

The second takes an h5ad and checks if it follows the schema version written into its metadata.

Both are currently marked as "experimental" as the primary intended users are still at CZI.

2020-11-02 08:26:37 -08:00