Commit Graph
12 Commits
Author SHA1 Message Date
Colin Megill c2b12abe2b toggle and scale dotplot 2021-07-26 13:23:21 -07:00
Colin Megill bb5bbaac8a reducer 2021-07-23 13:29:27 -07:00
Colin Megill 5f9d0a6b34 logging out values 2021-07-23 13:28:17 -07:00
Bruce Martin 0667ad0274 remove experimental reembedding support (#2301)
* remove experimental reembedding support

* lint

* lint

* add prepare requirements to requirements-dev

* oops, revert accidental deletion of import

* more test modifications

* remove obsolete unit tests
2021-07-15 13:55:26 -07:00
Bruce Martin 75cb513dd9 re-implement re-embeddings (#1679)
* fix mispelling

* re-implement re-embedding

* always load base embedding to fetch counts

* format

* lint

* fix tests

* lint

* fix accept handling

* test log

* more debug

* more

* more

* more

* more

* remove logging

* logging

* jsonify

* remove debugging logs

* lint

* clean up errors a bit

* fix issue found in PR review

* PR review changes
2020-07-30 12:31:36 -07:00
Bruce Martin 1269e188be Redux refactor (#1571)
* refactor categorical controls state

* lint

* fix race condition in tests

* fix typo

* add missing update on subset

* remove obsolete code

* update jest and puppeteer major version; update all minors

* update when label changes

* remove lint from tests; increase timeouts in e2e tests

* initial refactoring to new async annomatrix

* refine error handling

* fix bad merge

* add continuous legend

* lint

* fix memoization in color table creators

* partial implementation of user defined annotations

* add new annotations action creator file

* first pass at user annotations

* additional user annotation bug fixes

* user annotation auto-save

* unit test cleanup

* lint

* refactor into multiple files

* cleanup

* add column GC

* fix several bugs in user annotations

* remove debug code

* no anonymous functions

* undo redo cleanup

* file cleanup

* scatterplot

* performance

* cleanup

* remove old code

* render in parallel with load

* fix race condition

* simply graph rendering

* render throttle DRY

* fix category label order

* fix typo in e2e test setup

* re-fix the e2e test setup

* be more tolerant of races

* anno matrix unit tests

* temp disable reembedding

* pilot port continuous histo to react-async

* name change

* lint

* fix repaint bug

* typo fix

* update snap to match new ids

* world/universe name cleanup

* move annoMatrix to src dir

* use private underscore naming convention

* fix corner case in all selected

* name cleanup

* add layout control

* init edge case

* lint

* port scatterplot

* fix label indexing bug and improve tests

* port category to react-async

* fix user annotation labelling while subset

* select all of prev layout on layout switch

* fix race with crossfilter update

* prettier lint

* fix misleading comment

* fix url composition in loader

* first pass at crossfilter tests

* lint

* lint

* fix typo

* improved error handling for network errors

* fix memoization bug

* add memo

* refactor for performnce

* add missing single-value handling in select exact parser

* small bugs discovered by tests

* lint

* additional crossfilter unit tests

* remove extraneous comment

* add support for automatic category determination

* lint

* fix render bug in category

* take advantage of schema categories guarantee

* lint

* do not clear history when resetting

* enhanced annomatrix gc

* lint

* finish renaming to follow conventions; fix clone race bug

* lint

* add priority based loading to improve initial data load UX

* crossfilter cache perf

* perf tuning

* remove timers

* documentation

* PR review changes

* PR review changes

* more PR review edits

* improve clarity of comment

* more PR review fixes

* port centroidLabels to use react-async

* remove dead code

* pr review updates

* oops, remove logging
2020-07-14 13:53:33 -07:00
Severiano Badajoz c34a68304e remove all linting errors on client/src (#1463)
* run eslint --fix

* camelcase

* camelCase config part 1

* part 2

* part 3 - removing subscripts

* fix "class-methods-use-this"

* fix "class-methods-use-this"

* fix eslint ignores

* add eslint ignore for set state in update

* reformat comments to appease eslint

* add a11y features

* sort-comp fix

* a11y fix

* add ignore for set state in update

* add a11y htmlFor

* remove unused toast

* remove unnecessary bind

* add ignore for set state in update

* add rel="noopener noreferrer"

Using target="_blank" without rel="noopener noreferrer" is a security risk: see https://mathiasbynens.github.io/rel-noopener

* use arrow function to bind

* remove unused definitions/declarations

* prettier

* remove unused state

* add comments to empty catch blocks remove curly brackets

* escape '

* use eqeqeq

* switch from default export

* remove ignore log

* remove static

* fix import

* revert subscripting config

* clean-up

* remove unnecessary subscript

* fix new errors from master

* change category click handler to a class property

* fix camelcase changes that slipped by

* unused import

* Fix newly introduced ESLint errors from addGenes
2020-05-19 12:38:29 -07:00
Severiano Badajoz 6cccc41c0f run prettier(2.0.5) (#1438) 2020-05-04 10:26:42 -07:00
Bruce Martin 144b19c449 experimental re-embedding (#1186)
* first cut at re-embedding route and back-end support

* update and expand config route tests

* add scanpy_umap

* add reembedding to config route parameters

* front-end support for reembedding fetch and UI

* remove unused imports

* add loading state

* save reembedding in reducer state

* improve withColsFrom

* transmit reembed schema to client; pick unique embedding names

* display embeddings

* format

* lint

* spaces, tab size 2

* lint

* test hack for smoke-test race

* back out hack sleep

* add check for backed mode

* add unit test for reembedding

* lint

* hide re-embedding CLI param from help
2020-03-09 16:53:30 -07:00
Bruce Martin e770db1e2c load annotations incrementally (#1107)
* load annotations individually

* fix type check to be more general

* update node CI version from 10 to 12

* node 11

* debug print node version

* travis node version to latest

* try nvm

* remove extraneous node_js statement

* remove node version debugging printf

* incrementally load all annotations and layout

* process annotations and layout as they are loaded

* fix tests

* sort categories incrementally

* incrementally build category view summary; add category loading spinner

* add spinner to continuous metadata

* configure undoable reducer

* incremental crossfilter creation

* improve busy layout

* more layout cleanup

* correctly reconcile categories in schema

* refine layout of lsb spinners

* more spinner layout work

* more spinner layout

* always load layout before obs annotations
2020-02-10 11:22:27 -08:00
Bruce Martin 2d39cb3b30 sort the embedding names for the UI (#1098) 2020-01-09 06:33:14 -08:00
Bruce Martin 2357d0c1b8 layout change UI (#776)
* add layout to schema

* add layout choice action and reducer

* multi layout UI

* update unit tests

* add missing file

* update test schema

* fix duplicate test id

* fix tabs

* PR lint

* fix pytest
2019-05-22 13:21:33 -07:00