Commit Graph

15 Commits

Author SHA1 Message Date
Matt Weiden
1f94c71c22 Use sci notation for axis ticks abs(tick) >= 10000 (#1363)
Fixes https://github.com/chanzuckerberg/cellxgene/issues/1349

For more information see https://github.com/d3/d3-format

Note that does not _fully_ fix the issue described in #1349, but rather
makes the formatting issue far less likely. It is _still_ possible for
this to occur if the difference between two ticks in axes happes in the
a significant digit cropped by the scientific notation format
2020-04-08 09:45:32 -07:00
Matt Weiden
8a62c9f027 Add undo/redo smoke tests for annotations (#1175)
* Add undo/redo tests for annotations

Fixes https://github.com/chanzuckerberg/cellxgene/issues/969

... also refactor the tests for DRY.

* Add done()

* Make e2e annotations tests safer to concurrency

* Add data-testclass for save state.

* Simplify tests and make them dependent on save state
2020-02-26 12:10:03 -08:00
Matt Weiden
d30087ca63 Add frontend smoke tests for annotations (#1154)
* Add smoke test for annotations features

* Do not save during annotations tests

* Fix botched rebase in dev guidelines

* Revert "Do not save during annotations tests"

This reverts commit f0bd970bb2.

* Respond to feedback from @bkmartinjr
2020-02-14 17:23:45 -08:00
Matt Weiden
b172ff7f15 Add margins to histogram SVGs (#1085)
* Add a left margin to histogram SVGs

Fixes https://github.com/chanzuckerberg/cellxgene/issues/1042

1. Added "margins" to the SVG as in https://bl.ocks.org/mbostock/3019563
2. Tailored the brushable area to be just where the data is and locked
   puppeteerUtils to use that in e2e testing.

* Dial in margins to avoid y-axis clipping
2020-01-06 10:46:06 -08:00
Colin Megill
4c3d783fc8 Continuous data in right sidebar (#985)
* Create right sidebar files, move histos over

* restructure continuous legend + all padding

* right sidebar file

* proper graph positioning and resize

* new lasso values since right sidebar

* fix autosave position
2019-11-05 20:29:21 -05:00
Bruce Martin
3660a6cc27 Experimental - manual annotations (#837)
* icons, partway

* redux for values

* onChange

* cancel

* annotations lifecycle for category names

* copy categorical

* edit category

* add Dataframe.withColsFrom

* render user annotations; default add/delete annotation category

* add label name to actions

* category name edit

* error checking improvements

* change schema field isUserAnnotation to writable

* always have an unassigned label; implement delete label

* implement add new label and edit label name

* label current cell selection

* fix select exact bug in crossfilter

* clean up categorical reducer

* fix tests

* remove debugging printf

* implement subset/reset for user annotations

* undo redo support for user annotations

* remove duplicate button from categories

* add modal

* remove obsolete duplicate annotation reducers

* remove old debugging printf

* connect modal to annotation create and dup

* initial full-stack wiring

* finish up end-to-end wiring

* fix existing unit tests

* fix pytests to match new schema API

* remove debugging printfs

* add label file rotation

* remove obsolete comment

* add fbs encode/decode tests

* add tests for writable annotations

* simplify code

* fix hashing bug with FBS encoding

* lint

* fix smoke tests

* improve error checking in Dataframe.withColsFrom

* add unit test for Dataframe.withColsFrom

* add unit test for Dataframe.columns and Dataframe.renameCol

* fix bug in FBS encode, add better error checks, refactor

* add FBS encode/decode test

* add clarifying comment

* clean up action type names; fix state inconsistency in crossfilter update

* change autosave timer to 2.5sec

* sort categorical metadata render order so it remains consistent

* add temporary autogenerated label for add-new-label operation

* fix hover-over label menu interference with cell highlighting

* remove debugging code

* add missing reducer cases & fix typo

* make dataframe memoize more general purpose

* add dev mode for annos

* fix error on select duplicate

* handle zero occupancy categories

* correctly maintain unclipped AND clipped world

* correctly handle zero length FBS matrix and label files

* ensure all writable categorical schema contains an unassigned category

* handle case where building occupancy stack for category with no members

* dialog for creating label, disable button if duplicate or empty

* visually separate writeable

* edit category

* fix edit category name

* remove debugging code

* fix edit annotation label

* visually define unassigned, change options

* Pull in requirements.txt from `master`

* label currently selected cells

* duplicate label

* lint

* fix pytest merge issues

* rename --label-file to --experimental-label-file

* remove debugging console log

* spelling error fix; fix bug found in PR review.

* lint
2019-09-18 07:33:41 -04:00
Bruce Martin
0f36b49840 Graph/scatterplot improvements (#893)
* many graph/scatterplot fixes: 722, 882, 758, 886

* fix e2e test breakage caused by graph transform work

* convert webgl point shaders to use flags rather than explicit point size

* remove unused packages from dependencies

* fix typo in regl prop name

* factor common code into util helper file

* legibility tweaks
2019-08-22 20:56:05 -07:00
Colin Megill
6aeefb0fe6 menubar (#804)
* menubar 1

* zoom switching

* centering, pixel perfect canvas

* remove dead args and code

* clipping

* remove log

* if

* connect props

* lint

* undo

* logo left, componetize

* graph back to full height

* shadow to top

* do not prematurely call event handlers during render

* change test to deal with async histogram creation

* left section padding

* lint

* adjust graph to account for top bar,

* lasso tests

* refine histogram tests

* remove testing (onlys)
2019-06-13 15:15:43 -07:00
Bruce Martin
a6142bdf93 improve graph scale and centering (#796)
* add gutter to embedding canvas

* improve layout scale and translate

* fix lint

* pin tables to version 3.5.1

* fix lasso coordinate smoke tests
2019-05-30 13:31:41 -07:00
Bruce Martin
e941c1a496 scaling omitted from event handlers (#789)
* scaling omitted from event handlers

* fix smoke tests
2019-05-24 07:00:04 -07:00
Colin Megill
a657eb3152 Logo (#782)
* logo, black

* fixes

* remove template, move header
2019-05-23 11:47:24 -04:00
Bruce Martin
fcc05f6a00 coordinate system fixes for embedded graph (#768)
* change pan speed to 1 per issue #722

* correct handle scaling of graph when aspect ratio less than one

* add package lock

* add invert to our scale functions

* correctly transform to/from gl coordinates

* remove unused import

* fix naming of import

* update smoke tests
2019-05-20 14:22:41 -07:00
Charlotte Weaver
d522cc8f91 Add clipping test to smoke tests (#757)
* Add clipping test to smoke tests

* devtools on in debug
2019-05-09 15:31:55 -07:00
Charlotte Weaver
c9a8e3ea42 Add manual UX tests (#699) 2019-04-08 13:23:17 -07:00
Charlotte Weaver
5d4b11d287 Better smoke tests (#669) 2019-03-28 16:47:42 -07:00