Commit Graph
6 Commits
Author SHA1 Message Date
e6e358ddc8 Gene sets UI, right sidebar refactor (#2097)
* prototyping

* render histos on open gene set

* prototyping

* render histos on open gene set

* factor out add genes to own component

* remove unused import

* mock reducer

* color by geneset stub

* menus and buttons

* geneset dialogue stub

* remove heatmap mock

* componetize histogram

* reenable add genes

* re-add isuserdefined

* test data

* remove have fetched

* add isExpanded state to gene, and pass to histogram

* expand button

* toggleable

* mini

* bump number of genes to 50

* don't clear diffexp on subset

* move create category to top

* render diffexp as geneset

* geneset show mean expression

* gene set reducer

* add geneset UI reducer

* wire e2e gene set loading prototype

* fix sniffing bug

* fix typo

* add gene modals

* client/src/actions/

* add autosave

* rename data-dir cli param

* add geneset, add gene, delete set

* prototype: remove csv upload placeholder

* handle delete gene from set

* prepopulate geneset with genes from modal

* add geneset: rename action

* icons, language consistency

* chevron after

* handle empty string case on genes for create geneset

* edit geneset

* fix language on create

* copy correction

* add popper2
upgrade react popper
upgrade react popper
adding popover2 package

* truncate uses tooltip2

* gene set button text typo

* remove logging

* moving server over

* remove test imports

* don't try to destructure map, use array.from

* fix add gene map datastructure error

* Revert "fix add gene map datastructure error"

This reverts commit b0eed45952.

* name --> genesetName, genes --> geneSymbols

* add gene to geneset, temporary format

* handle empty case, clear form input

* lint -- genesets wasn't passed via props

* userinfo

* move genes string to object conversion to action

* remove tmp gene description

* emptystring default for description

* remove empty string

* remove top level package json

* remove package lock as well

* remove flag for feature toggle

* remove comments in geneset

* comment cleanup

* remove comment

* revert diffexp genes to 10

* color by gene set

* disable color by gene set

* Gene menus are now inline, remove dead prototype code

* remove todo, magic number to variable

* remove jshint in rightsidebar

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>

* remove unused geneset validation code

* tmp format pending geneset description

* move magic number into variable

* reorganize genesetsUI reducer pending tests

* rewire edit given new action name

* add basic validation and feedback for geneset name uniqueness

* mv annoDialog

* mv label, repair paths

* Update client/src/components/brushableHistogram/header.js

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>

* add imports for icon in histo

* update jest snapshots given blueprint/tooltip2 usage of index -1

* ensure no empty paragraph

* intent from blueprint

* remove remainder of jshint references

* do not push undo when autosave fires

* fix autosave bugs

* remove todos

* clamp to util

* scient to util

* revert clearing diffexp

* rename value to be more specific stacked bar

* clean up logging and commetns

* remove gene entry tests pending rewrite

* tab index -1

* update jest snapshot, blueprint tooltip 2

* caret margin

* snapshot update

* ensure histogram is centered

* add geneset actions to config

* comment maybeScientific

* comment clamp

* comment ui reducer

* remove prototype code

* remove error log

* remove references to bl.ocks

* componetize parseBulkGeneString

* catch case where geneset rename same name

* genesetui reducer tests

* add geneset ui to index reducer config

Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
2021-03-24 16:33:26 -04:00
Severiano Badajoz 6cccc41c0f run prettier(2.0.5) (#1438) 2020-05-04 10:26:42 -07:00
Bruce Martin fcc05f6a00 coordinate system fixes for embedded graph (#768)
* change pan speed to 1 per issue #722

* correct handle scaling of graph when aspect ratio less than one

* add package lock

* add invert to our scale functions

* correctly transform to/from gl coordinates

* remove unused import

* fix naming of import

* update smoke tests
2019-05-20 14:22:41 -07:00
Bruce Martin 467ae94faf more lint (#291)
* disable function-paren-newline warning

* fix misc lint

* lint

* remove noop exponentiation
2018-10-03 09:18:02 -07:00
bkmartinjr 4417e8f3da clean up CRLF 2018-08-09 10:50:54 -07:00
Charlotte Weaver dd5fa57259 renaming backend, cellxgene to server, client respectively 2018-06-26 11:41:32 -07:00