Bruce Martin
1ea2b7fe80
fix for incorrect stats computation in diff exp t-test ( #2318 )
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* 2211 fixes
* lint
* lint
* add missing test and bug found by test
* change terminology for count distribution
* update scanpy requirement
* update scanpy requirement
2021-07-23 11:36:26 -07:00
Bruce Martin
0667ad0274
remove experimental reembedding support ( #2301 )
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* remove experimental reembedding support
* lint
* lint
* add prepare requirements to requirements-dev
* oops, revert accidental deletion of import
* more test modifications
* remove obsolete unit tests
2021-07-15 13:55:26 -07:00
Bruce Martin
e334fbe96e
remove experimental ontology support ( #2300 )
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* remove experimental ontology support
* lint
* remove ontologies from unit tests
* additional test changes
2021-07-14 07:23:38 -07:00
Colin Megill and bkmartinjr
d04dba225f
Filename dialogue includes gene sets ( #2185 )
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* change filenames
* gene-sets to anno dialogue
* logging, lambda
* celllabels
* cell dash labels
* space
* fix 2182 - annotation file name change on the backend
Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com >
2021-05-07 17:32:11 -04:00
Bruce Martin
f2e9aecebe
hosted gene sets routes, plus a few bug fixes ( #2155 )
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* first cut at hosted gs routes
* lint
* update tests to match csv parser changes
* update tests to new API
* update gene set name validation rules to match requirements
* add path mapping from dataset to geneset
* add test cases for geneset GET route
* fix test assertion
* remove debugging code
* update gene set uri mapping function
* fix error message
* allow extra user-specified headers in gene set csv file
* clarify comment
2021-04-27 13:58:58 -07:00
Bruce Martin
ae30b66123
gene set summary progress ( #2127 )
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* revert removal of cache control headers
* checkpoint work on revising summary route
* add summary query support to annoMatrix
* summarize route cleanup
* add mising file
* clean up summarize route
* add summary histogram
* update deps
* lint
* more lint
* lint
* manage crossfiler during gene set state changes
* remove obsolete debugging code
* correctly perform async watch in histogram
* better error handling
2021-03-30 14:43:53 -07:00
Bruce Martin
b494dd31f4
revert removal of cache control headers ( #2118 )
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* revert removal of cache control headers
* always generate cache header for health route
2021-03-26 08:49:44 -07:00
Madison Dunitz
78c9d24ed4
Refactor czi_hosted and server into backend directory, pull common code into backend/common, refactor tests ( #2102 )
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* move local_server -> backend/server server-> backend/czi_hosted, pull common code into backend/common update imports, tests and make commands
2021-03-26 00:27:07 -05:00
Bruce Martin