Commit Graph

3 Commits

Author SHA1 Message Date
Bruce Martin
75cb513dd9 re-implement re-embeddings (#1679)
* fix mispelling

* re-implement re-embedding

* always load base embedding to fetch counts

* format

* lint

* fix tests

* lint

* fix accept handling

* test log

* more debug

* more

* more

* more

* more

* remove logging

* logging

* jsonify

* remove debugging logs

* lint

* clean up errors a bit

* fix issue found in PR review

* PR review changes
2020-07-30 12:31:36 -07:00
Bruce Martin
db7a485796 tighten up error reporting (#1269)
* black reformat

* tighten up error reporting

* lint

* fine tuning

* additional improvements in exception handling

* lint

* include exception and traceback in log

* fix typo
2020-03-22 09:55:47 -07:00
Bruce Martin
144b19c449 experimental re-embedding (#1186)
* first cut at re-embedding route and back-end support

* update and expand config route tests

* add scanpy_umap

* add reembedding to config route parameters

* front-end support for reembedding fetch and UI

* remove unused imports

* add loading state

* save reembedding in reducer state

* improve withColsFrom

* transmit reembed schema to client; pick unique embedding names

* display embeddings

* format

* lint

* spaces, tab size 2

* lint

* test hack for smoke-test race

* back out hack sleep

* add check for backed mode

* add unit test for reembedding

* lint

* hide re-embedding CLI param from help
2020-03-09 16:53:30 -07:00