Commit Graph
22 Commits
Author SHA1 Message Date
Severiano Badajoz f49c3d8fe7 feat: remove info drawer and reintroduce singleton categories (#2421)
* refactor: drop non-session auth from frontend

* remove dataset drawer and reintroduce singleton values
2021-09-20 16:58:55 +00:00
eaae6df5e3 TS Revert (1) (#2402)
* revert all commits to before Typescript migration

* update compat workflow to match latest deps (#2335)

* update compat workflow to match latest deps

* attempt to debug

* attempt to debug

* remove debugging code

* typo

* update deps to match desktop (#2340)

* fix: don't run lint with `--fix` on push tests (#2273)

* fix: don't run lint with `--fix` on push tests

* npx

Co-authored-by: maniarathi <mani.arathi@gmail.com>
Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com>

* rename X_approx_distribution to X_approximate_distribution (#2337)

* Correctly handle non-finite numbers in heuristic determination of X distribution (#2342)

* handle non-finites explicitly

* improve and test edge case handling for distribution estimation

* revert debugging changes

* code readability

* clean up type inferencing (#2332)

* unit tests for 64 bit conversion

* clean up type handling

* type inference tests

* more type inference fixes

* use schema to determine user intent for data typing

* stop using deprecated API

* fbs type encoding test

* add missing test

* add more tests

* correctly infer X type for CXG adaptor

* lint

* fix typo

* ts migration

* cleanup from PR review

* lint

* PR review changes

* remove unused packages from client (#2359)

* remove unused packages from client

* add missing peer dep

* fix: disable FE auth testing on compatibility tests (#2377)

* update: release process (#2277)

Co-authored-by: maniarathi <mani.arathi@gmail.com>

* fix: remove spaces in param setup (#2380)

* delete deploy workflow (#2396)

* undo reformatting which now does not pass lint

* fix snapshots which changed due to npm dep changes

* add missing quoting to snapshot

* another snapshot typo fix

* TS Revert (2) - replay PR #2347 and #2354 (#2403)

* replay edits from PR 2347

* TS Revert (3) - replay edits in PR #2327 (#2404)

* replay edits in PR 2327

* TS Revert (4) - replay PR #2355 (#2405)

* replay edits in PR 2355

* add additional babel config

* reformat with new prettier config

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
Co-authored-by: maniarathi <mani.arathi@gmail.com>
Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com>
2021-08-23 15:01:36 -07:00
934cc5c69b TS migration. #2288. (#2328)
* Added TS. Updated build and linting config. Added types.

* [ts-migrate][.] Rename files from JS/JSX to TS/TSX

Co-authored-by: ts-migrate <>

* [ts-migrate][.] Run TS Migrate

Co-authored-by: ts-migrate <>

* Corrected files mangled by ts-migrate.

* Updated lint config, minor linting.

* Re-enabled Husky.

* Updated tests and config.

* Reverted webpack devtool config.

* Removed obsolete snapshots.

* Added annotations snap.

* Updated tsconfig includes wrt linting.

* Removed ts-migrate.

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
2021-07-26 20:18:17 +00:00
Bruce Martin ae30b66123 gene set summary progress (#2127)
* revert removal of cache control headers

* checkpoint work on revising summary route

* add summary query support to annoMatrix

* summarize route cleanup

* add mising file

* clean up summarize route

* add summary histogram

* update deps

* lint

* more lint

* lint

* manage crossfiler during gene set state changes

* remove obsolete debugging code

* correctly perform async watch in histogram

* better error handling
2021-03-30 14:43:53 -07:00
Timmy Huang 8d932fb47d thuang-126-CZIF-policy-updates (#2111) (#2112) 2021-03-17 16:07:42 -07:00
Marcus Kinsella 46d02b1987 Handle schema v1.1.0 (#2002)
Correctly display datasets that follow schema version 1.1.0
2020-12-14 15:20:29 -08:00
Severiano Badajoz d87551ce5e fix version check (#1968)
Inverted the schema version check so that we check that it IS 1.0.0.

![image](https://user-images.githubusercontent.com/8716829/98184898-5c897b00-1ec0-11eb-89f7-c293dfbe8439.png)
2020-11-04 17:43:41 -08:00
Severiano Badajozandmaniarathi a5c9ae2432 Data drawer final round of prod QA fixes (#1955)
* add long title

* add organism to Dataset Metadata and create headers

* begin HTMLTable for metadata

* switch out truncating for scrolling

* add optional chaining to redux state mapping

Co-authored-by: maniarathi <mani.arathi@gmail.com>
2020-11-04 09:43:43 -08:00
Severiano BadajozandTimmy Huang 1c4c501c43 Auth UI tweaks (#1915)
* remove auth buttons and dataset info from info menu

* add auth buttons to menubar

* remove auth from top left

* new auth buttons

* move infomenu to lsb dir

* styling fixes

* feedback

* more feedback

Co-authored-by: Timmy Huang <thuang@chanzuckerberg.com>
2020-10-07 15:02:55 -07:00
Colin Megill 04a3c3c6b6 Partial fix for 1830 (#1863)
* Remove door icon from log in button
* Move log in and info buttons from the top bar to in line with the cellxgene icon and dataset name
* Hover over on login button should say "Log in to cellxgene"
* Show email

closes #1830
2020-09-30 11:45:10 -07:00
Severiano Badajoz 210042814f Info Drawer format adjustments (#1853)
This PR tweaks the look and feel of the info drawer in response to QA from @signechambers1
2020-09-18 13:16:28 -07:00
Severiano Badajoz 89b68723cc Create dataset info drawer (#1805)
* create infoDrawer

* create read/writes to redux store

* reimplement reducer that vanished

* remove aboutURL stuff from title

* add formatting and style

* s/length/size and make metadata items list items

* remove comment

* remove empty singletons

* refactor into async react component

* Clean up skeleton

* swap out for loop for map

* add comment

* replace placeholder

* switch ternary for `&&`

* event handling fixes and PR feedback

* add button and move click handler to button

* ditch empty categories

* move drawer button handling to redux

* remove categorical move note

* PR feedback from colin

* update snapshot

* remove hover state
2020-09-09 17:55:43 -07:00
Severiano Badajoz 4e96847032 Create Truncation Component (#1500)
* remove ESLint rules

operator-linebreak is no different then default
quotes is overwriting prettier config

* add string-pixel-width dep

* don't lint-staged src, only staged

* add widthMap

* create Truncate component

* refactor in truncate component

* add font load checking

* remove font-family styling

* render Truncate's child instead of creating own component to render

* refactor to use Truncate component

* add span back

* support children

* remove maybeTruncateString

* sub in Truncate component

* add bold prop

* accurately compute largest possible string

* remove logs

* tweak truncation method

* memoize comp function

* explain disable

* fix bugs w/ abs/floor

* tweak widths

* tweak widths

* fix font size

* remove border

* move test-id

* attempt css solution

* Revert "attempt css solution"

This reverts commit aac4d8a6f6.

* CSS solution v2

* remove string-pixel-width

* remove widthsMap

* remove dead code

* remove "data-truncated" as it is always true

* tweak label width

* fix e2e tests

* remove testing string

* e2e annotations tweaks

* correct snapshot

* remove resolves

* check for labels

* add test-id

* format fix

* update snapshot

* fix color

* pull constants out where available
2020-06-05 10:14:42 -07:00
Severiano Badajoz c34a68304e remove all linting errors on client/src (#1463)
* run eslint --fix

* camelcase

* camelCase config part 1

* part 2

* part 3 - removing subscripts

* fix "class-methods-use-this"

* fix "class-methods-use-this"

* fix eslint ignores

* add eslint ignore for set state in update

* reformat comments to appease eslint

* add a11y features

* sort-comp fix

* a11y fix

* add ignore for set state in update

* add a11y htmlFor

* remove unused toast

* remove unnecessary bind

* add ignore for set state in update

* add rel="noopener noreferrer"

Using target="_blank" without rel="noopener noreferrer" is a security risk: see https://mathiasbynens.github.io/rel-noopener

* use arrow function to bind

* remove unused definitions/declarations

* prettier

* remove unused state

* add comments to empty catch blocks remove curly brackets

* escape '

* use eqeqeq

* switch from default export

* remove ignore log

* remove static

* fix import

* revert subscripting config

* clean-up

* remove unnecessary subscript

* fix new errors from master

* change category click handler to a class property

* fix camelcase changes that slipped by

* unused import

* Fix newly introduced ESLint errors from addGenes
2020-05-19 12:38:29 -07:00
Matt Weiden 888f730526 Refactor CSS and React logic for layout (#1424)
* Refactor CSS layout and react logic for layout

Fixes https://github.com/chanzuckerberg/cellxgene/issues/1022

* Menubar should wrap inside middle pane instead of overlapping left
  sidebar when window is scrunched
* cellxgene should have a minimum width of 1240px

1. Replace absolute positioning and dimension calculation with css grid
2. Use flexbox for wrapping menubar buttons

* Middle pane (graph) can calculate its own size
* Removing components calculating their size/position relative to
  eachother increases modularity, decreases use of global variables
* Improved some scrollbar behavior
* Removed responsive reducer, propagating window size to components
  triggers unnecessary events and encourages breaking modularity; doing
  this made some components state agnostic

Reference: https://css-tricks.com/snippets/css/complete-guide-grid/

* Reposition the continuous legend

* Small fixes

* Respond to feedback from @colinmegill

* Respond to feedback from @colinmegill

Add more documentation on the renderGraph method.
2020-05-06 13:46:13 -07:00
Severiano Badajoz 6cccc41c0f run prettier(2.0.5) (#1438) 2020-05-04 10:26:42 -07:00
Colin Megill c4731d52e2 target blank (#1254) 2020-03-20 20:07:51 -04:00
Severiano Badajoz bd5f816d58 fix dataset title clipping (#1040) 2019-11-18 12:42:55 -08:00
Severiano Badajoz 44cb276cdf Add configurable about this dataset links (#907)
* add about arg

* add simple url validator

* attach about link to config api

* add links to configDefaults

* add conditional link in top left and menu item

* whitespace

* change to lower case

* move --about arg before click.command()

if this fixes it I have no idea why

* change link>URL

* be more descriptive about URL

* Make error more explicit

* refactor attach_data to accept about

* format

* change icon

* add trailing parenthesis

* whitespace
2019-09-25 19:23:49 -07:00
Severiano Badajoz 32feb36172 better handle long dataset titles (#909)
* truncate middle of long title names

* remove width

* In the case of VERY long titles, hide overflow

* align bottom of title with cellxgene

* add character length global and shrink length
2019-09-23 16:31:54 -07:00
Colin Megill 03baa1ac0b overflow title (#858) 2019-08-05 14:08:41 -04:00
Colin Megill 6aeefb0fe6 menubar (#804)
* menubar 1

* zoom switching

* centering, pixel perfect canvas

* remove dead args and code

* clipping

* remove log

* if

* connect props

* lint

* undo

* logo left, componetize

* graph back to full height

* shadow to top

* do not prematurely call event handlers during render

* change test to deal with async histogram creation

* left section padding

* lint

* adjust graph to account for top bar,

* lasso tests

* refine histogram tests

* remove testing (onlys)
2019-06-13 15:15:43 -07:00