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Author SHA1 Message Date
Charlotte Weaver 463cdef08b Cleanup .gitignore 
remove lines related to old separate repo version
add ignore for virtual environments and jupyter notebooks (I use them to test)
 2018-08-13 14:35:41 -07:00
Charlotte Weaver c8c098282d Merge pull request #185 from chanzuckerberg/csweaver/favicon 
Csweaver/favicon
 2018-08-13 10:56:39 -07:00
Charlotte Weaver 8c88f752ea Merge pull request #182 from chanzuckerberg/csweaver/static 
Set static folder to correct location
 2018-08-13 10:48:09 -07:00
Charlotte Weaver a4464d107f Add test to make sure static files are served 
this required that I break up the base url from the api route.
 2018-08-13 10:33:59 -07:00
Charlotte Weaver d44d267bda Initial tests for the rest v2 refactor 
testing the annotations and the data format validation
 2018-08-10 16:57:41 -07:00
Charlotte Weaver 55fa9b892a Splitting the format validation and mandatory annotations 2018-08-10 16:38:07 -07:00
Bruce Martin 5917dd1fb4 Merge pull request #181 from chanzuckerberg/csweaver/favicon 
Serving favicon correctly
 2018-08-10 08:28:49 -07:00
Charlotte Weaver 21a1f00a64 Set static folder to correct location 2018-08-09 14:25:11 -07:00
Charlotte Weaver e96653b826 Serving favicon correctly 2018-08-09 14:14:45 -07:00
Bruce Martin d01792f22b Merge pull request #178 from chanzuckerberg/bkmartinjr/crlf-cleanup 
clean up CRLF
 2018-08-09 11:31:18 -07:00
Charlotte Weaver 58000c1815 Format loaded dataset 
- create cell and gene ids
- recast numbers to float32/int32
 2018-08-09 11:23:43 -07:00
bkmartinjr 4417e8f3da clean up CRLF 2018-08-09 10:50:54 -07:00
Charlotte Weaver 3961bdc46d Merge pull request #166 from chanzuckerberg/csweaver/clean 
Added clean script for cellxgene
 2018-08-09 10:22:13 -07:00
Charlotte Weaver 004303300b -f flag for file removal too 2018-08-09 10:09:19 -07:00
Charlotte Weaver ba1e26138f Merge pull request #167 from chanzuckerberg/csweaver/build-anywhere 
Allow build-client to run anywhere
 2018-08-09 09:45:47 -07:00
Charlotte Weaver d093dc2e3b Allow build-client to run anywhere 2018-08-08 15:17:23 -07:00
Charlotte Weaver 3f0bb2ce1d Added clean script for cellxgene 2018-08-08 15:10:33 -07:00
Bruce Martin 585d51e9cf Merge pull request #164 from chanzuckerberg/bkmartinjr-crossfiltergroups 
add groups functionality to crossfilter
 2018-08-08 14:33:29 -07:00
Charlotte Weaver 246f4e41f0 Merge pull request #156 from chanzuckerberg/csweaver/infer-metadata 
Infer schema if none exists
 2018-08-08 11:56:13 -07:00
Charlotte Weaver 67504dcaff Merge pull request #142 from chanzuckerberg/csweaver/cli-subparsers 
Csweaver/cli subparsers
 2018-08-08 11:52:38 -07:00
Charlotte Weaver af85792cce Don't forget unsigned ints! 2018-08-08 11:20:01 -07:00
Charlotte Weaver f4780a9806 Moved add to parser out of try block. 2018-08-08 11:18:06 -07:00
bkmartinjr 8119962c28 revert the module change reversion 2018-08-08 10:45:48 -07:00
bkmartinjr b2add5f2ce Merge branch 'master' of https://github.com/chanzuckerberg/cellxgene into bkmartinjr-crossfiltergroups 2018-08-08 08:44:02 -07:00
Charlotte Weaver 2a11af2550 Formatting 2018-08-07 17:01:19 -07:00
Charlotte Weaver 2b698cc7d0 Merge remote-tracking branch 'origin/csweaver/cli-subparsers' into csweaver/cli-subparsers 2018-08-07 16:57:13 -07:00
Charlotte Weaver e5c7c0c44a Warn instead if print when scanpy isn't available 2018-08-07 16:57:07 -07:00
Charlotte Weaver 11f88a9eb2 Warn instead if print when scanpy isn't available 2018-08-07 16:49:40 -07:00
Charlotte Weaver bf19bb7dce Formatting 2018-08-07 16:38:25 -07:00
Charlotte Weaver c2b3f331cf Add layout and diffexp calculations to cli options 2018-08-07 16:37:47 -07:00
Charlotte Weaver 499b9551f1 moved scanpy parser to scanpy class 2018-08-07 16:37:02 -07:00
Charlotte Weaver 0969854e9e Merge pull request #162 from chanzuckerberg/csweaver/require 
Trimming out secondary dependencies from requirements
 2018-08-07 16:14:28 -07:00
Charlotte Weaver 247b89ab0c Update README.md 2018-08-07 15:54:25 -07:00
bkmartinjr 736ad2ca20 Merge branch 'master' of https://github.com/chanzuckerberg/cellxgene into bkmartinjr-crossfiltergroups 2018-08-07 15:46:43 -07:00
Bruce Martin 77f6e918b4 Merge pull request #163 from chanzuckerberg/csweaver/api-base 
api host 0.0.0.0 -> 127.0.0.1
 2018-08-07 15:46:13 -07:00
Charlotte Weaver ccee3e0a38 api host 0.0.0.0 -> 127.0.0.1 2018-08-07 15:43:13 -07:00
bkmartinjr 7ac8d31a96 Merge branch 'master' of https://github.com/chanzuckerberg/cellxgene into bkmartinjr-crossfiltergroups 2018-08-07 13:52:12 -07:00
Charlotte Weaver c11ae77de4 Trimming out secondary dependencies from requirements 2018-08-07 12:53:48 -07:00
Colin Megill c47f8d6ca5 Merge pull request #161 from chanzuckerberg/#152-security-warnings 
remove warnings in npm install, resolve security warnings
 2018-08-07 15:35:27 -04:00
Colin Megill 10cc801197 remove warnings in npm install, resolve security warnings 2018-08-07 15:00:28 -04:00
Charlotte Weaver 0db24a6c07 Merge pull request #157 from chanzuckerberg/csweaver/readme-data 
Added instructions on how to load your own data in scanpy
 2018-08-07 10:19:31 -07:00
Charlotte Weaver 9236f02637 Merge branch 'master' into csweaver/readme-data 2018-08-07 10:18:57 -07:00
bkmartinjr 957c1a9f20 Merge branch 'master' of https://github.com/chanzuckerberg/cellxgene into bkmartinjr-crossfiltergroups 2018-08-07 08:23:11 -07:00
Sidney Bell 12c52a55f7 Very minor changes to elaborate in a few places 2018-08-07 07:42:45 -07:00
Charlotte Weaver 16d7fac88e Added instructions on how to load your own data in scanpy 2018-08-06 17:15:35 -07:00
Charlotte Weaver a2b699b05d Infer schema if none exists 2018-08-06 16:39:18 -07:00
Charlotte Weaver 12b8232327 Merge pull request #155 from chanzuckerberg/csweaver/pip-install 
Use pip instead of python setup.py
 2018-08-06 16:03:39 -07:00
Charlotte Weaver a22a4e2473 Use pip instead of python setup.py 2018-08-06 14:56:42 -07:00
bkmartinjr 00be4b710e Merge branch 'master' of https://github.com/chanzuckerberg/cellxgene into bkmartinjr-crossfiltergroups 2018-08-06 12:32:12 -07:00
Charlotte Weaver 8401d1dd3d Merge pull request #154 from chanzuckerberg/build-fix 
Fix build
 2018-08-06 12:23:41 -07:00