Commit Graph
10 Commits
Author SHA1 Message Date
Bruce Martin 6b33315cbe Dataframe (#576)
* initial dataframe commit

* initial dataframe port of core app

* rename variables for clarity

* remove unused import

* comment out unused code

* fix array handling bug in crossfilter dimension creation

* allow creation of empty dataframes

* handle non-existent columns

* handle non-existent columns

* revise tests for new dataframe

* comments for clarity

* comments for clarity

* generate bulk add placeholder with real gene names

* fix bug in gene name adding

* more dataframe unit tests

* fix bug - subset from current world, not universe

* put cut and pasted code into a single function

* improve caching of crossfilter

* remove cascading update bug from graph

* more performance work

* improve state handling for scatterplot

* performance optimization of critical path

* add column summarization

* dataframe utils

* add callOnceLazy

* fix tests

* minor updates found during review

* fix misspelling

* remove RESTv02 from function names

* comment cleanup

* cut/icut col parameter defaults to null

* break up large test

* improve tests and comments on dataframe at/has functions
2019-02-22 11:31:34 -08:00
Bruce Martin b90447c387 binary wire format with flatbuffers (#509)
* first flatbuffer schema

* do not lint auto-generated files

* add flatbuffers package

* add flatbuffer module

* wire up /data/X/T route

* use flatbuffers for matrix data fetc

* clarity and comments

* add flatbuffer layout route

* clean up obsolete code

* fix tests

* move flake8 config to setup.cfg

* add comments

* lint

* rework layout routes for fbs

* add more type support to fbs

* lint

* add flatbuffer support for annotations

* function name improvements

* fix botched merge with master

* remove unused import

* route cleanup for flatbuffers

* rename function for clarity

* add missing globals to Jest tests

* fix client JS tests

* fix routes for Python tests

* comments for clarity

* non-finite floating point hardening

* more non-finite number handling

* lint

* fix tests for summarizeAnnotations

* harden diffexp calculation against FP errors

* cleanup unused code

* lint

* add encoding tests for flatbuffers

* application type specified as strings

* fix spelling error

* improve variable names

* add note about documentation gap

* rename FBS DataFrame to Matrix
2019-01-09 14:26:05 -08:00
Bruce Martin cfcf16aa69 [DO NOT MERGE] performance improvements in color-by feature (#535)
performance improvements in color-by feature
2018-12-27 14:05:49 -08:00
Jeremy Freeman dff2526077 warm to cool (#454) 2018-11-16 14:33:32 -08:00
Colin Megill ef80c8df2a Change color scales to rainbow (#449)
* rainbow

* eslint

* remove comments
2018-11-15 18:17:55 -08:00
Bruce Martin c7e6f54450 cleanup middleware pre-ship (mostly lint) (#329)
Fixes #180

URL middleware unused, but retained in expectation that we will need it shortly.
Fixed a bit of lint, mostly by reformatting or commenting out currently unused code.
2018-10-15 08:45:34 -07:00
Bruce Martin 467ae94faf more lint (#291)
* disable function-paren-newline warning

* fix misc lint

* lint

* remove noop exponentiation
2018-10-03 09:18:02 -07:00
Bruce Martin d4e850d18f #130 redux refactor (#208)
* mocks for redux refactor - for discussion

* more API design on redux refactor

* add new reuqired dependencies for build

* change babel target to use modern browser

* remove dead code

* remove dead code - joy plots

* checkpoint on redux refactoring

* checkpoint on redux refactoring

* fix mistaken rebase conflict resolution

* dead code removal; add name to dataframe backmap

* rename dataframe to universe

* update eslint config to more closely match prettier

* lint

* more eslint updates to match prettier

* additional config to make eslint match prettier

* add expression data to Universe/World

* remove obsolete reducers

* lint fixes

* more eslint cleanup

* lint

* lint

* fix but in countAllOnes when dimensions gt 1

* lint; do not display name metadata field

* lint; colors refactor

* lint; colors refactor

* update comments

* first cut at regraph and reset

* enable object-curly-braces consistent mode

* lint, handle regraph with no selection

* fix expression scatterplot bugs

* fix regression legend display

* add expression data cache

* remove console logging

* reset cell color on regraph/reset

* remove obsolete server URLs

* rename UniverseV01 to Universe_REST_API_v01

* add additional comments on the varDataCache

* merge universe reducer into controls reducer; simplify initialization-related actions

* use spread operator

* fix erroneous comment

* convert universe and world state to plain objects, and functionalize supporting code (remove ES6 classes)

* use spread operator

* lint

* improve variable names

* rename obsCrossfilter to crossfilter and obsDimensionMap to dimensionMap

* rename controls2 to controls
2018-09-17 20:43:39 -07:00
Colin Megill 3c9de7be9e add d3 and scale chromatic imports 2018-08-16 10:11:18 -04:00
Charlotte Weaver dd5fa57259 renaming backend, cellxgene to server, client respectively 2018-06-26 11:41:32 -07:00