patch release 0.9.2

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.9.1
+current_version = 0.9.2
 
 [bumpversion:file:setup.py]
 search = version="{current_version}"

client/package-lock.json

@@ -1,6 +1,6 @@
 {
   "name": "cellxgene",
-  "version": "0.9.1",
+  "version": "0.9.2",
   "lockfileVersion": 1,
   "requires": true,
   "dependencies": {

client/package.json

@@ -1,6 +1,6 @@
 {
   "name": "cellxgene",
-  "version": "0.9.1",
+  "version": "0.9.2",
   "license": "MIT",
   "description": "cellxgene is a web application for the interactive exploration of single cell sequence data.",
   "repository": "https://github.com/chanzuckerberg/cellxgene",

server/app/scanpy_engine/scanpy_engine.py

@@ -304,7 +304,7 @@ class ScanpyEngine(CXGDriver):
         if sparse.issparse(X):  # use tuned getcol/hstack for performance
             indices = np.nonzero(var_mask)[0]
             cols = [X.getcol(i) for i in indices]
-            return sparse.hstack(cols)
+            return sparse.hstack(cols, format="csc")
         else:   # else, just use standard slicing, which is fine for dense arrays
             return X[:, var_mask]
 

server/cli/cli.py

@@ -5,7 +5,7 @@ from .prepare import prepare
 
 
 @click.group(name="cellxgene", context_settings=dict(max_content_width=85))
-@click.version_option(version="0.9.1", prog_name="cellxgene", message="[%(prog)s] Version %(version)s")
+@click.version_option(version="0.9.2", prog_name="cellxgene", message="[%(prog)s] Version %(version)s")
 def cli():
     pass
 

setup.py

@@ -8,7 +8,7 @@ with open("server/requirements.txt") as fh:
 
 setup(
     name="cellxgene",
-    version="0.9.1",
+    version="0.9.2",
     packages=find_packages(),
     url="https://github.com/chanzuckerberg/cellxgene",
     license="MIT",